BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00019333
         (2228 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66189.1| hypothetical protein VITISV_006047 [Vitis vinifera]   290   e-176
gb|AAY23262.1| retrotransposon protein, putative, Ty3-gypsy sub-...   296   e-166
gb|AAT77372.1| putative polyprotein [Oryza sativa Japonica Group...   290   e-165
gb|AAL78107.1|AC093568_17 Putative polyprotein [Oryza sativa] gi...   289   e-164
gb|AAV44031.1| putative polyprotein [Oryza sativa Japonica Group...   289   e-164
gb|AAK92543.1|AC051624_1 Putative retroelement [Oryza sativa Jap...   291   e-164
emb|CAE03176.2| OSJNBa0070O11.7 [Oryza sativa Japonica Group]         289   e-164
emb|CAH66190.1| OSIGBa0144J05.2 [Oryza sativa Indica Group]           285   e-164
emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa Japonica Group]         285   e-164
gb|AAX96295.1| retrotransposon protein, putative, Ty3-gypsy sub-...   290   e-164
gb|ABA98437.1| retrotransposon protein, putative, Ty3-gypsy subc...   288   e-164
gb|AAD27547.1|AF111709_1 polyprotein [Oryza sativa Indica Group]      289   e-164
emb|CAH66117.1| OSIGBa0146N20.2 [Oryza sativa Indica Group]           289   e-164
gb|AAT73689.1| putative polyprotein [Oryza sativa Japonica Group]     287   e-164
emb|CAD40170.2| OSJNBa0061A09.9 [Oryza sativa Japonica Group]         288   e-164
gb|ABA92051.1| retrotransposon protein, putative, Ty3-gypsy subc...   289   e-163
gb|ABA98612.1| retrotransposon protein, putative, Ty3-gypsy subc...   288   e-163
emb|CAH66206.1| OSIGBa0096F13.1 [Oryza sativa Indica Group]           283   e-163
gb|ABA95224.1| retrotransposon protein, putative, Ty3-gypsy subc...   287   e-163
gb|AAN16322.1| putative polyprotein [Oryza sativa Japonica Group...   289   e-163

>emb|CAN66189.1| hypothetical protein VITISV_006047 [Vitis vinifera]
          Length = 1573

 Score =  290 bits (741), Expect(4) = e-176
 Identities = 150/256 (58%), Positives = 181/256 (70%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP LFVKKKD +LR+C+ YR+LN VTVKNKYPL  I+DL                 
Sbjct: 736  SPWGAPVLFVKKKDDTLRLCIEYRKLNRVTVKNKYPLPRIDDL----------------- 778

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
             R GYHQL +RE D+ KTAFRTRYG++EFLVMPF LTN PAA+MD M++V R  LD+FVI
Sbjct: 779  -RTGYHQLRVREDDVSKTAFRTRYGNYEFLVMPFGLTNAPAAFMDLMNRVFRAYLDRFVI 837

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VF+DDILIYS S EEH   L   L  LR+HQLY K  K EF L E+ FLG+V+S  GIAV
Sbjct: 838  VFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLDKSEFWLTEVNFLGHVVSEAGIAV 897

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            D SK+EA+  W+RP +V E+RSFLGL GYYR F+E  SR+  P+T LT+K V+F+W+E  
Sbjct: 898  DHSKVEAIQEWQRPTNVFEVRSFLGLAGYYRRFVEDFSRIAAPMTQLTRKWVKFDWNEEC 957

Query: 914  ECVFQTLKELLTTTLV 867
            E  FQ LK+ LTT  V
Sbjct: 958  ENAFQELKQKLTTAPV 973



 Score =  162 bits (411), Expect(4) = e-176
 Identities = 89/178 (50%), Positives = 114/178 (64%), Gaps = 4/178 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L  P  G+ + ++ DAS  GLGCVLMQ+G +VA    QLK HE+NY      LAA+VFAL
Sbjct: 974  LTAPISGELFMIYCDASTVGLGCVLMQQGKVVAYASRQLKQHERNYLAHDLELAAMVFAL 1033

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K   HYLYGE+F VYS++K+LKY+FT K+LN RQRRWME LE YDFALH HPGK N++A+
Sbjct: 1034 KTWIHYLYGEKFEVYSDHKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYHPGKANVVAD 1093

Query: 519  ALSRKGRGVVAGLTCPEGHVDEGVGAFRVVL*DRADWAYLSYIIVQPSI*QTVIEASV 346
            ALSRK  G +  L   E  +   +  F + L        L  I  +P + Q ++EA V
Sbjct: 1094 ALSRKSYGQLFSLGLREFEMYAVIEDFELCLVQEGRGPCLYSISARPMVIQRIVEAQV 1151



 Score =  135 bits (341), Expect(4) = e-176
 Identities = 62/118 (52%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  D     ++  + AGE  E W++  DG + F  RL VPK  ELR  LL +AHR++ T
Sbjct: 1149 AQVHDEFLEKVKAQLVAGEIDENWSMYEDGSVRFKGRLCVPKDVELRNELLADAHRAKYT 1208

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPG+ KMYQDL++ + W GMK D+A+FVA C  CQQVKAEHQRPA LLQPLP+ +WK
Sbjct: 1209 IHPGNTKMYQDLKRQFXWSGMKRDIAQFVANCQICQQVKAEHQRPAELLQPLPIPKWK 1266



 Score =  103 bits (256), Expect(4) = e-176
 Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 8/172 (4%)
 Frame = -3

Query: 2127 ILMLANQEFTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVH 1948
            ++ LA++   ++L ++ + GYDVILGMDW A + A+++CH  R+   +            
Sbjct: 582  VITLADRALNVDLRILDMTGYDVILGMDWLAVYRAVIDCHRRRIIFCL------------ 629

Query: 1947 NVPSPGWGNRDPDSRY--------FSCLLTSVTKVEQDCLLEHLSVVCEYPDVLPEELLG 1792
                P     DP  RY        F   L    K ++D  +  + VV ++ DV P+EL G
Sbjct: 630  ----PEGFESDPCYRYVLRKGSINFLACLRGKEKAQKD--ITEIPVVRKFQDVFPDELPG 683

Query: 1791 LPHIREVEFCIDLPEGVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
            LP  RE +F I++  G   IS+ P+RMAP EL+ L+ Q D+ L KG I PST
Sbjct: 684  LPPHREFDFSIEVYPGTDPISVSPYRMAPLELKELKTQLDELLGKGFIRPST 735


>gb|AAY23262.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|77548962|gb|ABA91759.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1416

 Score =  296 bits (759), Expect(4) = e-166
 Identities = 155/258 (60%), Positives = 187/258 (72%)
 Frame = -1

Query: 1640 VLSLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIEL 1461
            + S WGAP L VKK DGS RM + YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+L
Sbjct: 609  ISSPWGAPVLLVKKNDGSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDL 668

Query: 1460 RKLRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQF 1281
            R    GYHQL IR  DIPKTAF TRYG +EF VM F LTN PA +M+ M+++    LDQF
Sbjct: 669  RS---GYHQLKIRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQF 725

Query: 1280 VIVFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGI 1101
            V+VFIDDILIYS + EEH   L ++++ LR HQL+AKFSKCEF L+ + FLG+VISS G+
Sbjct: 726  VVVFIDDILIYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKCEFWLDRVAFLGHVISSNGV 785

Query: 1100 AVDPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDE 921
             VDPSK+EAVL W  P+ V+EIRSFLGL GYYR FIEG S+L  P+T L KK  +F+W  
Sbjct: 786  EVDPSKVEAVLAWNPPKIVSEIRSFLGLAGYYRRFIEGFSKLARPMTELLKKEKKFQWSV 845

Query: 920  AHECVFQTLKELLTTTLV 867
            A E  FQ +K+ LTT  V
Sbjct: 846  ACEDSFQEMKKRLTTAPV 863



 Score =  155 bits (391), Expect(4) = e-166
 Identities = 82/176 (46%), Positives = 115/176 (65%), Gaps = 4/176 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L +P+  + +E+F DAS QG+GCVLMQE  +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 864  LTLPDIRKDFEIFCDASRQGIGCVLMQERKVVAYASRQLRPHEANYPTHDLELAAVVHAL 923

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  ELN+RQRRW+E ++ YD  +H HPGK N++A+
Sbjct: 924  KIWRHYLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVAD 983

Query: 519  ALSRKGRGVVAGLTCPEGHVDEGVGAFRVVL*DRADWAYLSYIIVQPSI*QTVIEA 352
            ALSRK    VA +   + H+   +   R+ +      A L+   VQP++   + EA
Sbjct: 984  ALSRKAYCNVAQIRPDQDHLCRELEKLRLTVVQSGVPASLT---VQPTLESQIREA 1036



 Score =  119 bits (298), Expect(4) = e-166
 Identities = 51/83 (61%), Positives = 66/83 (79%)
 Frame = -2

Query: 250  RRLAVPKSEELRVSLLQEAHRSRLTVHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTC 71
            +R+ VP  +ELR  +L+EAH S  ++HPGS KMYQD++  +WW GMK DVA++VA C  C
Sbjct: 1070 QRICVPTKKELRDLILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDIC 1129

Query: 70   QQVKAEHQRPAGLLQPLPVAQWK 2
            Q+VKAEHQRPAGLLQPLP+ +WK
Sbjct: 1130 QRVKAEHQRPAGLLQPLPIPEWK 1152



 Score = 86.3 bits (212), Expect(4) = e-166
 Identities = 54/161 (33%), Positives = 77/161 (47%)
 Frame = -3

Query: 2124 LMLANQEFTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHN 1945
            L +   +F    IV+     D+ILGMDW A H   ++C    +TL   G     F    N
Sbjct: 465  LRIEEVDFLAKPIVLDSQSLDIILGMDWLAKHKGQIDCAEKSITLQGPGGKQVRF--TPN 522

Query: 1944 VPSPGWGNRDPDSRYFSCLLTSVTKVEQDCLLEHLSVVCEYPDVLPEELLGLPHIREVEF 1765
             P+               +  S+    Q   LE + +VCEYPDV PEEL  +P  RE+EF
Sbjct: 523  TPT---------------VSRSILTCLQVTSLESVPIVCEYPDVFPEELTSMPPDREIEF 567

Query: 1764 CIDLPEGVSLISIPPHRMAPTELQVLREQQDDQLKKGLICP 1642
             I+L  G + I+  P+RMA  EL  ++ Q ++   KG + P
Sbjct: 568  AIELAPGTAPIAKRPYRMAANELAEVKRQIEELESKGYVRP 608


>gb|AAT77372.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|51854392|gb|AAU10772.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1501

 Score =  290 bits (743), Expect(4) = e-165
 Identities = 148/256 (57%), Positives = 189/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 598  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 657

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG FE  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 658  ---GYHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 714

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L+E+KFLG++IS++G+AV
Sbjct: 715  VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLSEVKFLGHIISAQGVAV 774

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  S++ +P+T L KK  +F+W    
Sbjct: 775  DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSKIASPMTQLLKKDEKFKWSAEC 834

Query: 914  ECVFQTLKELLTTTLV 867
               F+ LK+ L +  V
Sbjct: 835  NQSFEELKKRLVSAPV 850



 Score =  158 bits (400), Expect(4) = e-165
 Identities = 76/142 (53%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS QGLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 851  LILPDQTKDFQVYCDASRQGLGCVLMQEGRVVAYASRQLRPHETNYPTHDLELAAVVHAL 910

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD  +H HPGK N++A+
Sbjct: 911  KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVAD 970

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  D+
Sbjct: 971  ALSRKS---YCNAVCTEGMCDK 989



 Score =  118 bits (295), Expect(4) = e-165
 Identities = 54/118 (45%), Positives = 83/118 (70%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +    +G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1023 AQVNDPEIAELKKNMRVGKARD-FHEDENGTIWLGERLCVPDDKELKDLILTEAHQTQYS 1081

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1082 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1139



 Score = 87.8 bits (216), Expect(4) = e-165
 Identities = 56/156 (35%), Positives = 82/156 (52%)
 Frame = -3

Query: 2103 FTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHNVPSPGWG 1924
            F  NLI++     DVILGMDW   +  +++C    +TL+       +F +  +  S    
Sbjct: 448  FLSNLILLESKDLDVILGMDWLTRNKGVIDCASRTITLTNDKGEKVTFRSPASQKSVASL 507

Query: 1923 NRDPDSRYFSCLLTSVTKVEQDCLLEHLSVVCEYPDVLPEELLGLPHIREVEFCIDLPEG 1744
            N+         +  S  K      LE + +V EYP+V PE+L  +P  RE+EF IDL  G
Sbjct: 508  NQAAIEGQTETVEKSPRK------LEDIPIVQEYPEVFPEDLTTMPPKREIEFRIDLAPG 561

Query: 1743 VSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
             + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 562  TAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 597


>gb|AAL78107.1|AC093568_17 Putative polyprotein [Oryza sativa]
            gi|21321760|gb|AAM47295.1|AC122146_14 Putative
            polyprotein [Oryza sativa Japonica Group]
            gi|31430576|gb|AAP52470.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1819

 Score =  289 bits (739), Expect(4) = e-164
 Identities = 148/256 (57%), Positives = 188/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 916  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 975

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 976  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 1032

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 1033 VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 1092

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 1093 DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTQLLKKDEKFKWTAEC 1152

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK+ L +  V
Sbjct: 1153 DKSFEELKKKLVSAPV 1168



 Score =  155 bits (391), Expect(4) = e-164
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 1169 LILPDQMKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 1228

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 1229 KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 1288

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 1289 ALSRKS---YCTALCTEGMCEE 1307



 Score =  117 bits (294), Expect(4) = e-164
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1341 AQVNDPEIAELKKNMRVGKARD-FLEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYS 1399

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1400 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1457



 Score = 91.7 bits (226), Expect(4) = e-164
 Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
 Frame = -3

Query: 2103 FTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHNVPSPGWG 1924
            F  NLI++   G DVILGMDW      +++C    VTL+        + ++ + P  G  
Sbjct: 766  FLANLILLDSKGLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLVS-PRKGVS 824

Query: 1923 NRDPDSRYFSCLLTSVTKVEQDCL-LEHLSVVCEYPDVLPEELLGLPHIREVEFCIDLPE 1747
                ++         V  VE++   L+ + +VCEYP+V PE+L  +P  RE+EF IDL  
Sbjct: 825  LNQIETEI------PVDTVEKNSRKLDDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAP 878

Query: 1746 GVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
            G + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 879  GTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 915


>gb|AAV44031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|55733814|gb|AAV59321.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1505

 Score =  289 bits (739), Expect(4) = e-164
 Identities = 149/256 (58%), Positives = 187/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 602  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 661

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG FE  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 662  ---GYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 718

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC F L+E+KFLG+VIS++G+AV
Sbjct: 719  VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCNFWLSEVKFLGHVISAQGVAV 778

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  S++  P+T L KK  +F+W    
Sbjct: 779  DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRQFIENFSKIARPMTQLLKKDEKFKWSAEC 838

Query: 914  ECVFQTLKELLTTTLV 867
               F+ LK+ L +  V
Sbjct: 839  NQSFEELKKKLVSAPV 854



 Score =  158 bits (400), Expect(4) = e-164
 Identities = 76/142 (53%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS QGLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 855  LILPDQTKDFQVYCDASRQGLGCVLMQEGRVVAYASRQLRPHETNYPTHDLELAAVVHAL 914

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD  +H HPGK N++A+
Sbjct: 915  KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVAD 974

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  D+
Sbjct: 975  ALSRKS---YCNAVCTEGMCDK 993



 Score =  117 bits (293), Expect(4) = e-164
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1027 AQVNDPEIAELKKNMRVGKARD-FHEDEHGTIWLGERLCVPDDKELKDLILTEAHQTQYS 1085

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1086 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1143



 Score = 87.8 bits (216), Expect(4) = e-164
 Identities = 55/156 (35%), Positives = 81/156 (51%)
 Frame = -3

Query: 2103 FTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHNVPSPGWG 1924
            F  NLI++     DVILGMDW   +  +++C    +TL+       +F       SP   
Sbjct: 452  FLSNLILLESKDLDVILGMDWLTRNKGVIDCASRTITLTNDKGEKITF------RSPASQ 505

Query: 1923 NRDPDSRYFSCLLTSVTKVEQDCLLEHLSVVCEYPDVLPEELLGLPHIREVEFCIDLPEG 1744
                  +  +    + T  +    LE + +V EYP+V PE+L  +P  RE+EF IDL  G
Sbjct: 506  KSVASLKQAAIEGQTETVEKSSRKLEDIPIVQEYPEVFPEDLTTMPPKREIEFRIDLAPG 565

Query: 1743 VSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
             + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 566  TAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 601


>gb|AAK92543.1|AC051624_1 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431042|gb|AAP52880.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1773

 Score =  291 bits (744), Expect(4) = e-164
 Identities = 149/256 (58%), Positives = 189/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 874  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 933

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 934  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 990

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 991  VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 1050

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 1051 DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTQLLKKDEKFKWTAEC 1110

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK+ L +T V
Sbjct: 1111 DKSFEELKKKLVSTPV 1126



 Score =  154 bits (389), Expect(4) = e-164
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 1127 LILPDQMKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 1186

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 1187 KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 1246

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 1247 ALSRKS---YCTALCIEGMCEE 1265



 Score =  115 bits (288), Expect(4) = e-164
 Identities = 54/118 (45%), Positives = 81/118 (68%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  D E + L++ +  G++ E +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1299 AQVNDSEIAELKKNMRVGKARE-FHEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYS 1357

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1358 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1415



 Score = 91.7 bits (226), Expect(4) = e-164
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 1/165 (0%)
 Frame = -3

Query: 2127 ILMLANQEFTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVH 1948
            ++ +    F  NLI++     DVILGMDW      +++C    VTL+        + ++ 
Sbjct: 716  LIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLV 775

Query: 1947 NVPSPGWGNRDPDSRYFSCLLTSVTKVEQDCL-LEHLSVVCEYPDVLPEELLGLPHIREV 1771
            + P  G      ++         V  VE++   LE + +VCEYP+V PE+L  +P  RE+
Sbjct: 776  S-PKKGVSLNQIETEI------PVDTVEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREI 828

Query: 1770 EFCIDLPEGVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
            EF IDL  G + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 829  EFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 873


>emb|CAE03176.2| OSJNBa0070O11.7 [Oryza sativa Japonica Group]
          Length = 1501

 Score =  289 bits (739), Expect(4) = e-164
 Identities = 149/256 (58%), Positives = 187/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 598  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 657

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG FE  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 658  ---GYHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 714

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L+E+KFLG+VIS++G+AV
Sbjct: 715  VFIDDILIYSKSEEEHKQHLRLVLEKLKEHQLYAKFSKCDFWLSEVKFLGHVISAQGVAV 774

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P+ V++IRSFLGL GYYR FIE  S++  P+T L KK  +F+W    
Sbjct: 775  DPSNVESVTKWTPPKIVSQIRSFLGLAGYYRRFIENFSKIARPMTQLLKKDEKFKWSAEC 834

Query: 914  ECVFQTLKELLTTTLV 867
               F+ LK+ L +  V
Sbjct: 835  NQSFEELKKRLVSAPV 850



 Score =  157 bits (398), Expect(4) = e-164
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            +++P++ + ++V+ DAS QGLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 851  IILPDQTKDFQVYCDASRQGLGCVLMQEGRVVAYASRQLRPHETNYPTHDLELAAVVHAL 910

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD  +H HPGK N++A+
Sbjct: 911  KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVAD 970

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  D+
Sbjct: 971  ALSRKS---YCNAVCTEGMCDK 989



 Score =  117 bits (294), Expect(4) = e-164
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1023 AQVNDPEIAELKKNMRVGKARD-FHEDEHGTIWLGERLCVPDDKELKDLILTEAHQTQYS 1081

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1082 IHPGSTKMYQDLKEKFWWASMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1139



 Score = 87.8 bits (216), Expect(4) = e-164
 Identities = 56/158 (35%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
 Frame = -3

Query: 2103 FTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHNVPSPGWG 1924
            F  NLI++     DVILGMDW   +  +++C    +TL+       +F       SP   
Sbjct: 448  FLSNLILLESKDLDVILGMDWLTRNKGVIDCASRTITLTNDKGEKITF------RSPA-- 499

Query: 1923 NRDPDSRYFSCLLTSVTKVEQDC--LLEHLSVVCEYPDVLPEELLGLPHIREVEFCIDLP 1750
            ++ P +      +   T+  +     LE + +V EYP+V PE+L  +P  RE+EF IDL 
Sbjct: 500  SQKPVASLNQAAIEGQTETVEKSPRKLEDIPIVQEYPEVFPEDLTTMPPKREIEFRIDLA 559

Query: 1749 EGVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
             G + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 560  PGTTPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 597


>emb|CAH66190.1| OSIGBa0144J05.2 [Oryza sativa Indica Group]
          Length = 1827

 Score =  285 bits (730), Expect(4) = e-164
 Identities = 147/256 (57%), Positives = 186/256 (72%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 924  SPWGAPVIFVEKKDKTKRMCVDYRALNKVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 983

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 984  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFIEFLDKFVV 1040

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 1041 VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 1100

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL  YYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 1101 DPSNVESVTKWTPPKTVSQIRSFLGLASYYRRFIENFSRIARPMTQLLKKDEKFKWTAEC 1160

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK  L +  V
Sbjct: 1161 DKSFEELKRKLVSAPV 1176



 Score =  154 bits (390), Expect(4) = e-164
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 1177 LILPDQTKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 1236

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 1237 KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 1296

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 1297 ALSRKS---YCTALCIEGMCEE 1315



 Score =  117 bits (293), Expect(4) = e-164
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1349 AQVNDPEIAELKKNMRVGKARD-FHEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYS 1407

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1408 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1465



 Score = 94.4 bits (233), Expect(4) = e-164
 Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 7/171 (4%)
 Frame = -3

Query: 2127 ILMLANQEFTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVH 1948
            ++ +    F  NLI++     DVILGMDW      +++C    VTL+             
Sbjct: 766  LIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTLT------------- 812

Query: 1947 NVPSPGWGNRDPDSRYFSCLLTSV-TKVEQDCL------LEHLSVVCEYPDVLPEELLGL 1789
            N        + PDS      L  + T++  D +      LE + +VCEYP+V PE+L  +
Sbjct: 813  NEKGETVVYKSPDSPKQGVSLNQIETEIPVDTVGKNLRKLEDIPIVCEYPEVFPEDLTTM 872

Query: 1788 PHIREVEFCIDLPEGVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
            P  RE+EF IDL  G + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 873  PPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 923


>emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa Japonica Group]
          Length = 1827

 Score =  285 bits (730), Expect(4) = e-164
 Identities = 147/256 (57%), Positives = 186/256 (72%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 924  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 983

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 984  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFIEFLDKFVV 1040

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 1041 VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 1100

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL  YYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 1101 DPSNVESVTKWTPPKTVSQIRSFLGLASYYRRFIENFSRIARPMTQLLKKDEKFKWTAEC 1160

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK  L +  V
Sbjct: 1161 DKSFEELKRKLVSAPV 1176



 Score =  154 bits (390), Expect(4) = e-164
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 1177 LILPDQTKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 1236

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 1237 KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 1296

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 1297 ALSRKS---YCTALCIEGMCEE 1315



 Score =  117 bits (293), Expect(4) = e-164
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1349 AQVNDPEIAELKKNMRVGKARD-FHEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYS 1407

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1408 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1465



 Score = 94.4 bits (233), Expect(4) = e-164
 Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 7/171 (4%)
 Frame = -3

Query: 2127 ILMLANQEFTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVH 1948
            ++ +    F  NLI++     DVILGMDW      +++C    VTL+             
Sbjct: 766  LIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTLT------------- 812

Query: 1947 NVPSPGWGNRDPDSRYFSCLLTSV-TKVEQDCL------LEHLSVVCEYPDVLPEELLGL 1789
            N        + PDS      L  + T++  D +      LE + +VCEYP+V PE+L  +
Sbjct: 813  NEKGETVVYKSPDSPKQGVSLNQIETEIPVDTVGKNLRKLEDIPIVCEYPEVFPEDLTTM 872

Query: 1788 PHIREVEFCIDLPEGVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
            P  RE+EF IDL  G + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 873  PPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 923


>gb|AAX96295.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|77548986|gb|ABA91783.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1760

 Score =  290 bits (743), Expect(4) = e-164
 Identities = 148/256 (57%), Positives = 189/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 871  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 930

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM FRLTN PA +M+ M++V    LD+FV+
Sbjct: 931  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFRLTNAPAFFMNLMNKVFMEFLDKFVV 987

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS + EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 988  VFIDDILIYSKTEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 1047

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 1048 DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTRLLKKDEKFKWTAEC 1107

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK+ L +  V
Sbjct: 1108 DKSFEELKKKLVSAPV 1123



 Score =  154 bits (389), Expect(4) = e-164
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 1124 LILPDQMKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 1183

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 1184 KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 1243

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 1244 ALSRKS---YCTALCIEGMCEE 1262



 Score =  114 bits (285), Expect(4) = e-164
 Identities = 53/118 (44%), Positives = 81/118 (68%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  D E + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1282 AQVNDSEIAELKKNMRVGKARD-FHEDEHGTIWLGERLCVPDDKELKDLILTEAHQTQYS 1340

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1341 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1398



 Score = 92.4 bits (228), Expect(4) = e-164
 Identities = 59/163 (36%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
 Frame = -3

Query: 2103 FTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHNVPSPGWG 1924
            F  NLI++     DVILGMDW      +++C    VTL+             N       
Sbjct: 721  FLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLT-------------NEKGETVV 767

Query: 1923 NRDPDSRYFSCLLTSV-TKVEQDCL------LEHLSVVCEYPDVLPEELLGLPHIREVEF 1765
             + PDS      L  +  ++  D +      LE + +VCEYP+V PE+L  +P  RE+EF
Sbjct: 768  YKSPDSPKQGVSLNQIEAEIPVDTVEKKLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEF 827

Query: 1764 CIDLPEGVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
             IDL  G++ I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 828  RIDLAPGIAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 870


>gb|ABA98437.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1825

 Score =  288 bits (738), Expect(4) = e-164
 Identities = 148/256 (57%), Positives = 187/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 922  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 981

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 982  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 1038

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 1039 VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 1098

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 1099 DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTQLLKKDEKFKWTAEC 1158

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK  L +  V
Sbjct: 1159 DKSFEELKRKLVSAPV 1174



 Score =  154 bits (390), Expect(4) = e-164
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 1175 LILPDQTKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 1234

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 1235 KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 1294

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 1295 ALSRKS---YCTALCIEGMCEE 1313



 Score =  117 bits (294), Expect(4) = e-164
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1347 AQVNDPEIAELKKNMRVGKARD-FLEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYS 1405

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1406 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1463



 Score = 90.1 bits (222), Expect(4) = e-164
 Identities = 59/162 (36%), Positives = 84/162 (51%), Gaps = 6/162 (3%)
 Frame = -3

Query: 2103 FTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHNVPSPGWG 1924
            F  NLI++     DVILGMDW      +++C    VTL+        +    ++ SP  G
Sbjct: 772  FLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVY---KSLVSPKKG 828

Query: 1923 NRDPDSRYFSCLLTSVTKVEQDC------LLEHLSVVCEYPDVLPEELLGLPHIREVEFC 1762
                     + L    T++  D        LE + +VCEYP+V PE+L  +P  RE+EF 
Sbjct: 829  ---------ASLNQIETEIPMDAEEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFR 879

Query: 1761 IDLPEGVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
            IDL  G + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 880  IDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 921


>gb|AAD27547.1|AF111709_1 polyprotein [Oryza sativa Indica Group]
          Length = 1521

 Score =  289 bits (739), Expect(4) = e-164
 Identities = 148/256 (57%), Positives = 188/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 618  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 677

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 678  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 734

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 735  VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 794

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 795  DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTQLLKKDEKFKWTTEC 854

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK+ L +  V
Sbjct: 855  DKSFEELKKKLVSAPV 870



 Score =  154 bits (388), Expect(4) = e-164
 Identities = 75/142 (52%), Positives = 101/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P+  + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 871  LILPDPTKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 930

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 931  KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 990

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 991  ALSRKN---YCTALCVEGMCEE 1009



 Score =  117 bits (294), Expect(4) = e-164
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1043 AQVNDPEIAELKKNMRVGKARD-FLEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYS 1101

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1102 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1159



 Score = 90.5 bits (223), Expect(4) = e-164
 Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 1/165 (0%)
 Frame = -3

Query: 2127 ILMLANQEFTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVH 1948
            ++ +    F  NLI++     DVILGMDW      +++C    VTL+           VH
Sbjct: 460  LIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGET----VVH 515

Query: 1947 -NVPSPGWGNRDPDSRYFSCLLTSVTKVEQDCLLEHLSVVCEYPDVLPEELLGLPHIREV 1771
             ++ SP  G            +   T  +    LE + +VCEYP+V PE+L  +P  RE+
Sbjct: 516  KSLVSPKQG---ASLNQIEAEIPVDTMEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREI 572

Query: 1770 EFCIDLPEGVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
            EF IDL  G + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 573  EFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 617


>emb|CAH66117.1| OSIGBa0146N20.2 [Oryza sativa Indica Group]
          Length = 1521

 Score =  289 bits (739), Expect(4) = e-164
 Identities = 148/256 (57%), Positives = 188/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 618  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 677

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 678  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 734

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 735  VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 794

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 795  DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTQLLKKDEKFKWTAEC 854

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK+ L +  V
Sbjct: 855  DKSFEELKKKLVSAPV 870



 Score =  154 bits (389), Expect(4) = e-164
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 871  LILPDQMKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 930

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 931  KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 990

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 991  ALSRKS---YCTALCIEGMCEE 1009



 Score =  117 bits (293), Expect(4) = e-164
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1043 AQVNDPEIAELKKNMRVGKARD-FHEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYS 1101

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1102 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1159



 Score = 90.5 bits (223), Expect(4) = e-164
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
 Frame = -3

Query: 2103 FTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHNVPSPGWG 1924
            F  NLI++   G DVILGMDW      +++C    VTL+        + ++ + P  G  
Sbjct: 468  FLANLILLDSKGLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLVS-PRKGVS 526

Query: 1923 NRDPDSRYFSCLLTSVTKVEQDCL-LEHLSVVCEYPDVLPEELLGLPHIREVEFCIDLPE 1747
                ++         V  VE++   L+ + +VCEYP V PE+L  +P  RE+EF IDL  
Sbjct: 527  LNQIETEI------PVDTVEKNSRKLDDIPIVCEYPKVFPEDLTTMPPKREIEFRIDLAP 580

Query: 1746 GVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
            G + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 581  GTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 617


>gb|AAT73689.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1516

 Score =  287 bits (735), Expect(4) = e-164
 Identities = 147/256 (57%), Positives = 188/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 613  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 672

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG FE  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 673  ---GYHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 729

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S ++H   L +VL+ L++HQLYAKFSKC+F L+E+KFLG+VIS++G+AV
Sbjct: 730  VFIDDILIYSKSEKQHEQHLRLVLEKLKEHQLYAKFSKCDFWLSEVKFLGHVISAQGVAV 789

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  S++  P+T L KK  +F+W    
Sbjct: 790  DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSKIARPMTQLLKKDEKFKWSAEC 849

Query: 914  ECVFQTLKELLTTTLV 867
               F+ LK+ L +  V
Sbjct: 850  NQSFEELKKKLVSAPV 865



 Score =  158 bits (400), Expect(4) = e-164
 Identities = 76/142 (53%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS QGLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 866  LILPDQTKDFQVYCDASRQGLGCVLMQEGRVVAYASRQLRPHETNYPTHDLELAAVVHAL 925

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD  +H HPGK N++A+
Sbjct: 926  KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVAD 985

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  D+
Sbjct: 986  ALSRKS---YCNAVCTEGMCDK 1004



 Score =  117 bits (293), Expect(4) = e-164
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1038 AQVNDPEIAELKKNMRVGKARD-FHEDEHGTIWLGERLCVPDDKELKDLILTEAHQTQYS 1096

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1097 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1154



 Score = 87.8 bits (216), Expect(4) = e-164
 Identities = 56/156 (35%), Positives = 82/156 (52%)
 Frame = -3

Query: 2103 FTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHNVPSPGWG 1924
            F  NLI++     DVILGMDW   +  +++C    +TL+       +F +  +  S    
Sbjct: 463  FLSNLILLESKDLDVILGMDWLTRNKGVIDCASRTITLTNDKGEKITFRSPVSQKSVASL 522

Query: 1923 NRDPDSRYFSCLLTSVTKVEQDCLLEHLSVVCEYPDVLPEELLGLPHIREVEFCIDLPEG 1744
            N+         +  S  K      LE + +V EYP+V PE+L  +P  RE+EF IDL  G
Sbjct: 523  NQAAIEGQTETVEKSPRK------LEDIPIVQEYPEVFPEDLTTMPPKREIEFRIDLAPG 576

Query: 1743 VSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
             + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 577  TAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 612


>emb|CAD40170.2| OSJNBa0061A09.9 [Oryza sativa Japonica Group]
          Length = 1653

 Score =  288 bits (738), Expect(4) = e-164
 Identities = 148/256 (57%), Positives = 187/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 816  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 875

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 876  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 932

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 933  VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 992

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 993  DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTQLLKKDEKFKWTAEC 1052

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK  L +  V
Sbjct: 1053 DKSFEELKRKLVSAPV 1068



 Score =  154 bits (390), Expect(4) = e-164
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 1069 LILPDQTKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 1128

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 1129 KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 1188

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 1189 ALSRKS---YCTALCIEGMCEE 1207



 Score =  117 bits (294), Expect(4) = e-164
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1241 AQVNDPEIAELKKNMRVGKARD-FLEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYS 1299

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1300 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1357



 Score = 89.7 bits (221), Expect(4) = e-164
 Identities = 56/156 (35%), Positives = 84/156 (53%)
 Frame = -3

Query: 2103 FTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHNVPSPGWG 1924
            F  NLI++     DVILGMDW      +++C    VTL+        + ++ + P  G  
Sbjct: 666  FLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLVS-PKKGAS 724

Query: 1923 NRDPDSRYFSCLLTSVTKVEQDCLLEHLSVVCEYPDVLPEELLGLPHIREVEFCIDLPEG 1744
                ++      +   T+ +    LE + +VCEYP+V PE+L  +P  RE+EF IDL  G
Sbjct: 725  LNQIETE-----IPVDTEEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPG 779

Query: 1743 VSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
             + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 780  TAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 815


>gb|ABA92051.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1777

 Score =  289 bits (739), Expect(4) = e-163
 Identities = 148/256 (57%), Positives = 188/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 874  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 933

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 934  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 990

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 991  VFIDDILIYSESEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 1050

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 1051 DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTQLLKKDEKFKWTAEC 1110

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK+ L +  V
Sbjct: 1111 DKSFEELKKKLVSAPV 1126



 Score =  153 bits (387), Expect(4) = e-163
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 1127 LILPDQMKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAMVHAL 1186

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 1187 KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 1246

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 1247 ALSRKS---YCTALCIEGMCEE 1265



 Score =  117 bits (292), Expect(4) = e-163
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1299 AQVNDPEIAELKKNMRVGKARD-FHEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYS 1357

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1358 IHPGSTKMYQDLKERFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1415



 Score = 90.9 bits (224), Expect(4) = e-163
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
 Frame = -3

Query: 2103 FTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHNVPSPGWG 1924
            F  NLI++     DVILGMDW      +++C    VTL+        + ++ + P  G  
Sbjct: 724  FLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTLTNEKGETVVYKSLVS-PKKGVS 782

Query: 1923 NRDPDSRYFSCLLTSVTKVEQDCL-LEHLSVVCEYPDVLPEELLGLPHIREVEFCIDLPE 1747
                ++         V  VE++   LE + +VCEYP+V PE+L  +P  RE+EF IDL  
Sbjct: 783  LNQIETEI------PVDTVEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAP 836

Query: 1746 GVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
            G + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 837  GTAPIYKRPYRMAVNELAEVKKQVDEQLQKGYIRPST 873


>gb|ABA98612.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1775

 Score =  288 bits (737), Expect(4) = e-163
 Identities = 147/256 (57%), Positives = 187/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 926  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 985

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 986  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 1042

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 1043 VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 1102

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V+++RSFLGL GYYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 1103 DPSNVESVTKWTPPKTVSQVRSFLGLAGYYRRFIENFSRIARPMTQLLKKDEKFKWTAEC 1162

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK  L +  V
Sbjct: 1163 DKSFEELKRKLVSAPV 1178



 Score =  154 bits (390), Expect(4) = e-163
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 1179 LILPDQTKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 1238

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 1239 KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 1298

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 1299 ALSRKS---YCTALCIEGMCEE 1317



 Score =  117 bits (294), Expect(4) = e-163
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1351 AQVNDPEIAELKKNMRVGKARD-FLEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYS 1409

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1410 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1467



 Score = 89.7 bits (221), Expect(4) = e-163
 Identities = 56/156 (35%), Positives = 84/156 (53%)
 Frame = -3

Query: 2103 FTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHNVPSPGWG 1924
            F  NLI++     DVILGMDW      +++C    VTL+        + ++ + P  G  
Sbjct: 776  FLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLVS-PKKGAS 834

Query: 1923 NRDPDSRYFSCLLTSVTKVEQDCLLEHLSVVCEYPDVLPEELLGLPHIREVEFCIDLPEG 1744
                ++      +   T+ +    LE + +VCEYP+V PE+L  +P  RE+EF IDL  G
Sbjct: 835  LNQIETE-----IPVDTEEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPG 889

Query: 1743 VSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
             + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 890  TAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 925


>emb|CAH66206.1| OSIGBa0096F13.1 [Oryza sativa Indica Group]
          Length = 1827

 Score =  283 bits (725), Expect(4) = e-163
 Identities = 146/256 (57%), Positives = 185/256 (72%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 924  SPWGAPVIFVEKKDKTKRMCVDYRALNKVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 983

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 984  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFIEFLDKFVV 1040

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+ V
Sbjct: 1041 VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVPV 1100

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL  YYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 1101 DPSNVESVTKWTPPKTVSQIRSFLGLASYYRRFIENFSRIARPMTQLLKKDEKFKWTAEC 1160

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK  L +  V
Sbjct: 1161 DKSFEELKRKLVSAPV 1176



 Score =  154 bits (390), Expect(4) = e-163
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 1177 LILPDQTKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 1236

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 1237 KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 1296

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 1297 ALSRKS---YCTALCIEGMCEE 1315



 Score =  117 bits (293), Expect(4) = e-163
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1349 AQVNDPEIAELKKNMRVGKARD-FHEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYS 1407

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1408 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1465



 Score = 94.4 bits (233), Expect(4) = e-163
 Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 7/171 (4%)
 Frame = -3

Query: 2127 ILMLANQEFTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVH 1948
            ++ +    F  NLI++     DVILGMDW      +++C    VTL+             
Sbjct: 766  LIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTLT------------- 812

Query: 1947 NVPSPGWGNRDPDSRYFSCLLTSV-TKVEQDCL------LEHLSVVCEYPDVLPEELLGL 1789
            N        + PDS      L  + T++  D +      LE + +VCEYP+V PE+L  +
Sbjct: 813  NEKGETVVYKSPDSPKQGVSLNQIETEIPVDTVGKNLRKLEDIPIVCEYPEVFPEDLTTM 872

Query: 1788 PHIREVEFCIDLPEGVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
            P  RE+EF IDL  G + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 873  PPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 923


>gb|ABA95224.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1570

 Score =  287 bits (735), Expect(4) = e-163
 Identities = 147/256 (57%), Positives = 187/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L     FSKI+LR 
Sbjct: 874  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGTKVFSKIDLRS 933

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 934  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 990

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 991  VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 1050

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 1051 DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTQLLKKDEKFKWTAEC 1110

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK+ L +  V
Sbjct: 1111 DKSFEELKKKLVSAPV 1126



 Score =  154 bits (389), Expect(4) = e-163
 Identities = 75/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P++ + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 1127 LILPDQMKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 1186

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 1187 KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 1246

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            ALSRK         C EG  +E
Sbjct: 1247 ALSRKS---YCTALCIEGMCEE 1265



 Score =  117 bits (292), Expect(4) = e-163
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1299 AQVNDPEIAELKKNMRVGKARDFFE-DEHGTIWMGERLCVPDDKELKDLILTEAHQTQYS 1357

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1358 IHPGSTKMYQDLKERFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1415



 Score = 91.3 bits (225), Expect(4) = e-163
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
 Frame = -3

Query: 2103 FTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVHNVPSPGWG 1924
            F  NLI++     DVILGMDW      +++C    VTL+        + ++ + P  G  
Sbjct: 724  FLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTLTNEKGETVVYKSLVS-PKKGVS 782

Query: 1923 NRDPDSRYFSCLLTSVTKVEQDCL-LEHLSVVCEYPDVLPEELLGLPHIREVEFCIDLPE 1747
                ++         V  VE++   LE + +VCEYP+V PE+L  +P  RE+EF IDL  
Sbjct: 783  LNQIETEI------PVDTVEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAP 836

Query: 1746 GVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
            G + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 837  GTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 873


>gb|AAN16322.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|31430814|gb|AAP52680.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1796

 Score =  289 bits (739), Expect(4) = e-163
 Identities = 148/256 (57%), Positives = 188/256 (73%)
 Frame = -1

Query: 1634 SLWGAPALFVKKKDGSLRMCMYYRRLN*VTVKNKYPLSCINDLFE*LH*AVCFSKIELRK 1455
            S WGAP +FV+KKD + RMC+ YR LN VT+KNKYPL  I+DLF+ L  A  FSKI+LR 
Sbjct: 893  SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 952

Query: 1454 LRLGYHQLMIREVDIPKTAFRTRYGHFEFLVMPFRLTNVPAAYMDQMHQVCR*ILDQFVI 1275
               GYHQL IRE DIPKTAF TRYG +E  VM F LTN PA +M+ M++V    LD+FV+
Sbjct: 953  ---GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 1009

Query: 1274 VFIDDILIYSSSPEEHVS*LHIVLQMLRQHQLYAKFSKCEF*LNELKFLGNVISSEGIAV 1095
            VFIDDILIYS S EEH   L +VL+ L++HQLYAKFSKC+F L E+KFLG+VI+++G+AV
Sbjct: 1010 VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAV 1069

Query: 1094 DPSKIEAVLNWERPESVTEIRSFLGLVGYYRSFIEGISRLVTPLTHLTKKGVRFEWDEAH 915
            DPS +E+V  W  P++V++IRSFLGL GYYR FIE  SR+  P+T L KK  +F+W    
Sbjct: 1070 DPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTQLLKKDEKFKWTAEC 1129

Query: 914  ECVFQTLKELLTTTLV 867
            +  F+ LK+ L +  V
Sbjct: 1130 DKSFEELKKKLVSAPV 1145



 Score =  151 bits (382), Expect(4) = e-163
 Identities = 74/142 (52%), Positives = 100/142 (70%), Gaps = 4/142 (2%)
 Frame = -3

Query: 867  LVIPERGQGYEVFSDASHQGLGCVLMQEGNIVANGLCQLKPHEKNYPT----LAAIVFAL 700
            L++P+  + ++V+ DAS  GLGCVLMQEG +VA    QL+PHE NYPT    LAA+V AL
Sbjct: 1146 LILPDPTKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHAL 1205

Query: 699  KLRRHYLYGERFNVYSNYKNLKYMFTHKELNLRQRRWMEFLEYYDFALHNHPGKTNLIAN 520
            K+ RHYL G R  VY+++K+LKY+FT  +LNLRQRRW+E ++ YD ++H HPGK N++A+
Sbjct: 1206 KIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVAD 1265

Query: 519  ALSRKGRGVVAGLTCPEGHVDE 454
            AL RK         C EG  +E
Sbjct: 1266 ALRRKS---YCTALCIEGMCEE 1284



 Score =  117 bits (294), Expect(4) = e-163
 Identities = 54/118 (45%), Positives = 82/118 (69%)
 Frame = -2

Query: 355  SKCQDPEFSSLRRCIEAGESVE*WALCADGGITFVRRLAVPKSEELRVSLLQEAHRSRLT 176
            ++  DPE + L++ +  G++ + +     G I    RL VP  +EL+  +L EAH+++ +
Sbjct: 1318 AQVNDPEIAELKKNMRVGKARDFFE-DEHGTIWMGERLCVPDDKELKELILTEAHQTQYS 1376

Query: 175  VHPGSIKMYQDLRKVYWWKGMKADVAKFVAKCLTCQQVKAEHQRPAGLLQPLPVAQWK 2
            +HPGS KMYQDL++ +WW  M+ ++A+FVA C  CQ+VKAEHQRPAGLLQPL + +WK
Sbjct: 1377 IHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWK 1434



 Score = 90.9 bits (224), Expect(4) = e-163
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 1/165 (0%)
 Frame = -3

Query: 2127 ILMLANQEFTINLIVMVIAGYDVILGMDWFAAHHAILECHLSRVTLSISGVAAFSFWAVH 1948
            ++ +    F  NLI++     DVILGMDW      +++C    VTL+        + ++ 
Sbjct: 735  LIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLV 794

Query: 1947 NVPSPGWGNRDPDSRYFSCLLTSVTKVEQDCL-LEHLSVVCEYPDVLPEELLGLPHIREV 1771
            + P  G      ++         V  VE++   LE + +VCEYP+V PE+L  +P  RE+
Sbjct: 795  S-PKQGVSLNQIEAEI------PVDTVEKNLRKLEDIPIVCEYPEVFPEDLTIMPPKREI 847

Query: 1770 EFCIDLPEGVSLISIPPHRMAPTELQVLREQQDDQLKKGLICPST 1636
            EF IDL  G + I   P+RMA  EL  +++Q D+QL+KG I PST
Sbjct: 848  EFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 892