BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00016153
         (1191 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein A...   194   6e-84
ref|XP_004296004.1| PREDICTED: putative ribonuclease H protein A...   197   5e-75
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   195   1e-67
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   196   6e-66
ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm...   137   6e-53
ref|XP_004306275.1| PREDICTED: putative ribonuclease H protein A...   136   5e-47
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...   146   6e-47
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...   146   8e-47
gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat...   129   1e-46
emb|CAB75484.1| putative protein [Arabidopsis thaliana]               144   2e-46
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...   129   1e-44
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta...   131   1e-44
gb|EMJ28392.1| hypothetical protein PRUPE_ppa019361mg, partial [...   115   7e-43
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   175   3e-41
ref|XP_004242524.1| PREDICTED: uncharacterized protein LOC101258...   122   4e-40
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   122   4e-40
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta...   121   4e-40
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...   125   6e-40
ref|XP_004233578.1| PREDICTED: putative ribonuclease H protein A...   119   1e-39
ref|XP_004301440.1| PREDICTED: putative ribonuclease H protein A...   120   4e-39

>ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 872

 Score =  194 bits (492), Expect(2) = 6e-84
 Identities = 98/212 (46%), Positives = 139/212 (65%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            FDTL+W F+L VL+ FGFH +F+  +  +  SARLS+LING   GYF C +GVRQGDPLS
Sbjct: 89   FDTLSWDFLLHVLQAFGFHESFVQ-VRVLLLSARLSLLINGRTYGYFSCGQGVRQGDPLS 147

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            PLLFC+AE+ LSR +  LV + +++ + SPRG  +PS++L+A DV++FC+G ++N+L + 
Sbjct: 148  PLLFCLAEEVLSRGISMLVSSGQVKRIHSPRGTLSPSYVLFAGDVIVFCRGNRQNLLRVM 207

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
              F  Y  +S Q +N  KS ++ G     RR  S+ +   +  G+    YLG P+F G P
Sbjct: 208  SFFYEYGSVSGQIINKDKSQVFIGK--HNRRRHSISDCLGIPLGTAPFMYLGAPIFHGKP 265

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
            R    Q I DK++ KL+ W G  LSMAGR+ L
Sbjct: 266  RVAHFQAIVDKVRLKLSSWVGSFLSMAGRLQL 297



 Score =  145 bits (366), Expect(2) = 6e-84
 Identities = 70/178 (39%), Positives = 107/178 (60%)
 Frame = -3

Query: 556 VNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPKQEGG 377
           + SVI S F+++F +Y WP+ LL+++    RNFLW+G ++ R    V+W  CC+P  EGG
Sbjct: 298 IKSVIYSMFVYTFQVYEWPVSLLRKVERWCRNFLWSGDIDKRGIPLVSWTSCCAPIDEGG 357

Query: 376 LGLKDLATMNRALLRKLTWKFMTSNCFAFSFLRTRYLKSFSDPRRRYLFSSLWPALREHY 197
           LGLK L  +N +LL K  W+  TS+     F+R R+ K     RR Y  SS+WP +R+ +
Sbjct: 358 LGLKKLDVLNSSLLLKRCWEIFTSSFEGCCFIRNRFSK-----RRSYAPSSIWPGVRKFW 412

Query: 196 MSLLSETQWIIGKHSKVRFWQDNWLGTPLTEMLQIPNQISKTLTALVSNLYCNGYWHL 23
             + + T+W++G   K+ FW+DN+LG PL E       ++   ++LVS+   NG W L
Sbjct: 413 GLVQNNTRWLVGTGDKISFWRDNFLGRPLIEFFGNHGALNDN-SSLVSDYIDNGSWVL 469


>ref|XP_004296004.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 751

 Score =  197 bits (500), Expect(2) = 5e-75
 Identities = 105/212 (49%), Positives = 138/212 (65%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            FDTLNW F++EVL  FGF S F   +  +  SA LSILINGSP G+F CT+GVRQGDPLS
Sbjct: 28   FDTLNWQFLIEVLHRFGFGSRFTDLMLILLNSAHLSILINGSPHGFFSCTKGVRQGDPLS 87

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            P+LFCIAE+ LSR L  L  + +++ +S PRG  + +H+LYADD+ IFC+G  +++  + 
Sbjct: 88   PILFCIAEEALSRGLTALFSSKKVRSISLPRGC-SLTHVLYADDLFIFCRGDTKSLRQLQ 146

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
                 Y   S Q VN  KS  Y G S   RR   + +I   + G++   YLGVP+FKG P
Sbjct: 147  SFLDNYGAASGQLVNKDKSTFYLGASHFHRR-HQVKKILGFKLGTSPFSYLGVPIFKGKP 205

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
             ++ LQ + DK KA+L  WKG  LSMAGR+ L
Sbjct: 206  CRKHLQALVDKAKARLAGWKGKLLSMAGRVQL 237



 Score =  112 bits (281), Expect(2) = 5e-75
 Identities = 58/184 (31%), Positives = 94/184 (51%)
 Frame = -3

Query: 556 VNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPKQEGG 377
           V+ V  S  +HSF IY W   LL  ++A  RNF+W+G +  RK + ++W   C+P+ E G
Sbjct: 238 VHDVFQSMLLHSFSIYLWATSLLSHLSACARNFIWSGDLAIRKLVTISWQQVCTPRNEAG 297

Query: 376 LGLKDLATMNRALLRKLTWKFMTSNCFAFSFLRTRYLKSFSDPRRRYLFSSLWPALREHY 197
           L L++L  +  A L  L W+ +  +    SF   R+   F   + +Y  SS+W  L+   
Sbjct: 298 LDLRNLKALYTAGLISLAWQTLLQSSSWGSFACRRF-TIFRHMKFQYFTSSVWHGLKRVL 356

Query: 196 MSLLSETQWIIGKHSKVRFWQDNWLGTPLTEMLQIPNQISKTLTALVSNLYCNGYWHLTD 17
             L   ++WIIG  + + FW D WL + + + L +   +S  L + V++   +  W L  
Sbjct: 357 PLLFEHSRWIIGDGNSILFWSDKWLHSSIIQQLNM-GSLSHLLNSRVADFIWDQQWALPS 415

Query: 16  TFRN 5
            F N
Sbjct: 416 HFSN 419


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 642

 Score =  195 bits (495), Expect(2) = 1e-67
 Identities = 98/212 (46%), Positives = 134/212 (63%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            FDTLNW F+L VL+ FGF+  F +WI+TI  S+++ I +NG+  G+F C RGVRQGDPLS
Sbjct: 328  FDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLS 387

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            PLLFCI E+ LSR +  L     I ++++ R    P H  Y DD+++FCK    +++ + 
Sbjct: 388  PLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLK 447

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
              F+ Y   S Q +N  KSFI+ G  I+  R  +++ I     GS    YLG P+FKG P
Sbjct: 448  SLFTRYADCSGQIMNIRKSFIFAG-GITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKP 506

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
            +    QPIADK+KAKL KWK   LS+AGR+ L
Sbjct: 507  KGIHFQPIADKVKAKLAKWKASLLSIAGRIQL 538



 Score = 90.1 bits (222), Expect(2) = 1e-67
 Identities = 39/85 (45%), Positives = 54/85 (63%)
 Frame = -3

Query: 556 VNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPKQEGG 377
           V SV+ S  +H+  IY WPI++LKEM   I+NF+W+G V  RK + VAW   C+  +EGG
Sbjct: 539 VKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGG 598

Query: 376 LGLKDLATMNRALLRKLTWKFMTSN 302
           LG+K L  +N A   K+ W  M S+
Sbjct: 599 LGVKSLICLNEATNLKICWNLMQSD 623


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 528

 Score =  196 bits (499), Expect(2) = 6e-66
 Identities = 102/212 (48%), Positives = 128/212 (60%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            FDTLNW F+L+VL+ FGF   F +WI+ I +SA+LSI INGS +GYF C+RGVRQGDPLS
Sbjct: 267  FDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKLSICINGSQQGYFSCSRGVRQGDPLS 326

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            PLLFC+AED LSR L +LV   +++ M   R    PSH+LYADD++IFC G         
Sbjct: 327  PLLFCLAEDVLSRSLTKLVEQGKLKQMRGTRNCLVPSHILYADDIMIFCNG--------- 377

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
                                      IS  R   L+ +    +GS    YLGVP+FKG P
Sbjct: 378  -------------------------GISDARLQQLINVIGFNKGSFPFNYLGVPIFKGKP 412

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
            + R+LQPI DKIK KL+ WK   LS+AGR+ L
Sbjct: 413  KARFLQPIVDKIKTKLSNWKASILSIAGRVQL 444



 Score = 82.8 bits (203), Expect(2) = 6e-66
 Identities = 36/84 (42%), Positives = 50/84 (59%)
 Frame = -3

Query: 556 VNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPKQEGG 377
           + SV  S  IH+  IY WP  LLKE+    RNF+W+G +  RK + VAW   C P+ +GG
Sbjct: 445 IKSVAQSMLIHTITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKLCKPQSQGG 504

Query: 376 LGLKDLATMNRALLRKLTWKFMTS 305
           LG++ L+ +N A   KL W  + S
Sbjct: 505 LGIRSLSQLNAAGNLKLCWDMLHS 528


>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
           gi|223537826|gb|EEF39443.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score =  137 bits (344), Expect(2) = 6e-53
 Identities = 63/128 (49%), Positives = 87/128 (67%)
 Frame = -3

Query: 556 VNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPKQEGG 377
           +NSVI +S +H+FM+YRWP  LLK +  AIRNFLWTGSV  +K + V W HCC P  EGG
Sbjct: 180 INSVIFASLLHTFMMYRWPSSLLKSIEKAIRNFLWTGSVSYKKLVTVKWGHCCKPISEGG 239

Query: 376 LGLKDLATMNRALLRKLTWKFMTSNCFAFSFLRTRYLKSFSDPRRRYLFSSLWPALREHY 197
           +GLK L  +NR +L ++ WKF +++ F + FLR+RYL +   PR     S +WP++RE Y
Sbjct: 240 IGLKRLDVLNRTMLCRIAWKFYSNDSFVYRFLRSRYLVASGVPRS----SLVWPSIRELY 295

Query: 196 MSLLSETQ 173
             L + +Q
Sbjct: 296 SKLQATSQ 303



 Score = 99.0 bits (245), Expect(2) = 6e-53
 Identities = 61/149 (40%), Positives = 79/149 (53%)
 Frame = -1

Query: 1002 FCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAISKAF 823
            F  A  FL +    L    E+  M   R    P HL YA+D+LIF + TK N+  I K F
Sbjct: 31   FLSARGFLEQDSFFLADLGELVGMDGGRNVSCPPHLFYANDLLIFFRETKSNVEIIHKVF 90

Query: 822  SFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAPRKR 643
              Y  +  Q+VN  KS +    SI  RRA +L  ++ M+  S  L YLGV  F+GAP+ +
Sbjct: 91   DSYGMILGQRVNLDKSEVLLSKSIPLRRALALRFLTVMRLDSFPLVYLGVLNFQGAPKAK 150

Query: 642  WLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
            WL+   D I  K   WKG TL MAGR+ L
Sbjct: 151  WLKATMDNILVKFDNWKGRTLFMAGRLAL 179


>ref|XP_004306275.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 727

 Score =  136 bits (342), Expect(2) = 5e-47
 Identities = 82/219 (37%), Positives = 121/219 (55%), Gaps = 7/219 (3%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            +D LNW ++   L  FGF  N+I+ +     S   S++ING PEG+F+ +RG+RQGDPLS
Sbjct: 11   YDFLNWRYIKACLTKFGFCDNWINMVLNCISSVSFSVIINGKPEGWFKPSRGIRQGDPLS 70

Query: 1011 PLLFCIAEDFLSRYLDELV--LNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLA 838
              +F +  + L R  ++L     N++ I+S+PRG    S+L++ADD LIF K T R    
Sbjct: 71   SYIFILCMEPLIREFNKLAEKPRNQVGIVSAPRGP-RISNLVFADDCLIFAKATPRGARN 129

Query: 837  ISKAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKG 658
            I K  S +   S Q++N+ KS +YF  ++   R   ++ I  +Q+ S   +YLG+     
Sbjct: 130  ILKTLSDFATASGQKINFHKSSLYFSPNVCGSRKNDIVNILGIQQKSTIEKYLGIHNV-- 187

Query: 657  APRKRWLQPIAD-----KIKAKLTKWKGHTLSMAGRMCL 556
                 W  PI       KI  KL  WK +TLS AGR+ L
Sbjct: 188  ---ACWKDPINSKELILKISNKLAGWKKNTLSHAGRVTL 223



 Score = 80.1 bits (196), Expect(2) = 5e-47
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
 Frame = -3

Query: 526 HSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPKQEGGLGLKDLATMN 347
           H    +    R  K ++   R+FLW     D K   VAW   C+PK  GGLG++  A  N
Sbjct: 234 HVMSCFNCDKRTTKAVDTESRSFLWG----DSKNPPVAWEQVCTPKSIGGLGIRPSAYFN 289

Query: 346 RALLRKLTWK-FMTSNCFAFSFLRTRYLK--SFSDPRRRYLFSSLWPALREHYMSLLSET 176
           +A + KL WK  M  + +    ++ +YLK  SF + +++   S  W  + +    +    
Sbjct: 290 KAAVAKLGWKIIMDHSNWWVQIVKNKYLKNHSFFETKKKSSDSVAWKGILDSRDLITKGM 349

Query: 175 QWIIGKHSKVRFWQDNWL-GTPLTEMLQIPNQISKTLTALVSNLYCNGYW 29
           +W IG   +V+FW  NW+   PL  +L    + +    A VSN      W
Sbjct: 350 RWTIGTGKEVKFWTFNWIFDFPLINLLNDQQKATINWDANVSNFIAGNSW 399


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score =  146 bits (369), Expect(2) = 6e-47
 Identities = 76/209 (36%), Positives = 113/209 (54%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            +D + W F+   +R FGF + +I WI    +S   S+LINGSP GY   TRG+RQGDPLS
Sbjct: 737  YDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLS 796

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            P LF +  D LS  ++    + +++ +    G  A +HL +ADD L FC+   RN  A+ 
Sbjct: 797  PYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALK 856

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
              F  YE  S Q++N  KS I FG+ +     + L +I  +       +YLG+P   G  
Sbjct: 857  DVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRK 916

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGR 565
            +K   + I D++K + + W    LS AG+
Sbjct: 917  KKEMFEYIIDRVKKRTSTWSARFLSPAGK 945



 Score = 69.3 bits (168), Expect(2) = 6e-47
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
 Frame = -3

Query: 568  KNVFVNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPK 389
            K + + SV  +  +++   ++ P  ++ E+ + + NF W  +   R    VAW      K
Sbjct: 945  KEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSK 1004

Query: 388  QEGGLGLKDLATMNRALLRKLTWKFMT-SNCFAFSFLRTRYLKSFS--DPRRRYLFSSLW 218
            +EGGLG +DLA  N ALL K  W+ +   N      ++ RY K  S  D + R   S  W
Sbjct: 1005 KEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGW 1064

Query: 217  PALREHYMSLLSETQWIIGKHSKVRFWQDN 128
             +L +    L   T+ +IG    +R   DN
Sbjct: 1065 ASLLDGIALLKKGTRHLIGDGQNIRIGLDN 1094


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score =  146 bits (368), Expect(2) = 8e-47
 Identities = 76/209 (36%), Positives = 113/209 (54%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            +D + W F+   +R FGF + +I WI    +S   S+LINGSP GY   TRG+RQGDPLS
Sbjct: 963  YDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLS 1022

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            P LF +  D LS  ++    + +++ +    G  A +HL +ADD L FC+   RN  A+ 
Sbjct: 1023 PYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALK 1082

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
              F  YE  S Q++N  KS I FG+ +     + L +I  +       +YLG+P   G  
Sbjct: 1083 DVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRK 1142

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGR 565
            +K   + I D++K + + W    LS AG+
Sbjct: 1143 KKEMFEYIIDRVKKRTSTWSARFLSPAGK 1171



 Score = 69.3 bits (168), Expect(2) = 8e-47
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
 Frame = -3

Query: 568  KNVFVNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPK 389
            K + + SV  +  +++   ++ P  ++ E+ + + NF W  +   R    VAW      K
Sbjct: 1171 KEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSK 1230

Query: 388  QEGGLGLKDLATMNRALLRKLTWKFMT-SNCFAFSFLRTRYLKSFS--DPRRRYLFSSLW 218
            +EGGLG +DLA  N ALL K  W+ +   N      ++ RY K  S  D + R   S  W
Sbjct: 1231 KEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGW 1290

Query: 217  PALREHYMSLLSETQWIIGKHSKVRFWQDN 128
             +L +    L   T+ +IG    +R   DN
Sbjct: 1291 ASLLDGIALLKKGTRHLIGDGQNIRIGLDN 1320


>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
          Length = 480

 Score =  129 bits (323), Expect(2) = 1e-46
 Identities = 59/174 (33%), Positives = 96/174 (55%)
 Frame = -3

Query: 556 VNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPKQEGG 377
           V S+I    ++SF IY WP RLL ++++ I+NF+W+G +   K   V+W   C P   GG
Sbjct: 267 VKSIIHGMLVYSFQIYMWPRRLLHQLDSWIKNFIWSGDIYTHKVCTVSWKVMCRPWAAGG 326

Query: 376 LGLKDLATMNRALLRKLTWKFMTSNCFAFSFLRTRYLKSFSDPRRRYLFSSLWPALREHY 197
           L +K    +N +L+  L W+F T++    + +  R+LK    P + Y  SS+W  ++EH 
Sbjct: 327 LDIKPTCLINESLILLLAWQFSTADSQWAALMHHRFLK-HGTPLQHYFLSSMWGGIKEHL 385

Query: 196 MSLLSETQWIIGKHSKVRFWQDNWLGTPLTEMLQIPNQISKTLTALVSNLYCNG 35
            ++ S + WI+G  + +  W DNWLG  L + L I   +     A V+++  NG
Sbjct: 386 STISSNSIWIVGTGANINLWTDNWLGIRLVDSLNISPTLHTKFRASVADVIVNG 439



 Score = 86.3 bits (212), Expect(2) = 1e-46
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
 Frame = -1

Query: 921 RGG*APSHLLYADDVLIFCKGTKRNMLAISKAFSFYEQLSRQQVNWAKSFIYFG--TSIS 748
           RG   P+H+LYADDVLIFC GTK+N+  + K F+ Y ++S Q +N  KS  Y G  T+  
Sbjct: 146 RGASIPTHILYADDVLIFCAGTKQNIRCLLKFFNDYSEVSAQIINNNKSQFYAGAMTTSH 205

Query: 747 ARRAASLLEISSMQRGSNCLQYLGVPLFKGAPRKRWLQPIADKIKAKLTKWKGHTLSMAG 568
           ++  A  L  S+    +    YLG P+FKG  +  + Q I D+IK K   WK   LS+ G
Sbjct: 206 SQMIAGTLGFSA---DNIPFFYLGCPIFKGKLKGIYFQSIVDRIKVKFAIWKCTLLSIMG 262

Query: 567 RM 562
           R+
Sbjct: 263 RV 264


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score =  144 bits (363), Expect(2) = 2e-46
 Identities = 81/215 (37%), Positives = 113/215 (52%), Gaps = 3/215 (1%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            +D + W F+   +R FGF   +I WI    +S   S+LINGSP GY   TRG+RQGDPLS
Sbjct: 202  YDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLS 261

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            P LF +  D LS  +     + +I+ +    G  A +HL +ADD L FC+   RN  A+ 
Sbjct: 262  PYLFILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALK 321

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSI---SARRAASLLEISSMQRGSNCLQYLGVPLFK 661
              F  YE  S Q++N  KS I FG+ +   +  R  +LL I +   G    +YLG+P   
Sbjct: 322  DVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGG---KYLGLPEQF 378

Query: 660  GAPRKRWLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
            G  +K     I D++K +   W    LS AG+  L
Sbjct: 379  GRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEIL 413



 Score = 69.7 bits (169), Expect(2) = 2e-46
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
 Frame = -3

Query: 568 KNVFVNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPK 389
           K + + SV  +  +++   ++ P  ++ E+ + + NF W  +   R    VAW      K
Sbjct: 410 KEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSK 469

Query: 388 QEGGLGLKDLATMNRALLRKLTWKFMT-SNCFAFSFLRTRYLK--SFSDPRRRYLFSSLW 218
           +EGGLG +DLA  N ALL K  W+ +   N      ++ RY K  S  D + R   S  W
Sbjct: 470 KEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQQSYGW 529

Query: 217 PALREHYMSLLSETQWIIGKHSKVRFWQDN 128
            +L      L   T+++IG    +R   DN
Sbjct: 530 SSLLSGIALLRKGTRYVIGDGKTIRLGIDN 559


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score =  129 bits (324), Expect(2) = 1e-44
 Identities = 69/212 (32%), Positives = 114/212 (53%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            +D + W F+ ++L   GF   +++ + +   +   S +ING   G    +RG+RQGDPLS
Sbjct: 588  YDRVEWGFLRKLLLTMGFDGRWVNLVMSCVATVSYSFIINGRVCGSVTPSRGLRQGDPLS 647

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            P LF +  D  S+ + + V++ EI    + R G   SHLL+ADD L+F + T++  L I 
Sbjct: 648  PFLFILVADAFSQMVKQKVVSKEIHGAKASRNGPEISHLLFADDSLLFTRATRQECLTIV 707

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
               + YE  S Q++N+ KS + F   +S  +   L+ +  M++     +YLG+P   G  
Sbjct: 708  DILNKYEAASGQKINYEKSEVSFSRGVSCEKKEELITLLHMRQVDRHQKYLGIPALCGRS 767

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
            +K   + + D++  KL  WK   LS AG+  L
Sbjct: 768  KKVLFRELLDRMWKKLRGWKEKLLSRAGKEVL 799



 Score = 79.3 bits (194), Expect(2) = 1e-44
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
 Frame = -3

Query: 568  KNVFVNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPK 389
            K V + +VI +   +   +Y+ P+ +++E+++A+  F W G  ++RK   ++W   C PK
Sbjct: 796  KEVLIKAVIQALPTYLMGVYKLPVAVIQEIHSAMARFWWGGKGDERKMHWLSWEKMCKPK 855

Query: 388  QEGGLGLKDLATMNRALLRKLTWKFMTSNCFAFSFLRTRYLKSFSD---PRRRYLFSSLW 218
              GG+G KDLA  N ALL K  W+ + +     S + +       D    R  Y  S  W
Sbjct: 856  CMGGMGFKDLAVFNDALLGKQVWRLLHNKESLLSRVMSAKYYPHGDVRYARLGYSHSYSW 915

Query: 217  PALREHYMSLLSETQWIIGKHSKVRFWQDNWLG 119
             ++      +L    W +G  +K+  W   W+G
Sbjct: 916  RSIWGAKSLVLEGLIWRVGDGTKIDIWSAPWVG 948


>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 773

 Score =  131 bits (330), Expect(2) = 1e-44
 Identities = 70/212 (33%), Positives = 106/212 (50%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            FD + W F+  +++  GF   + +WI T   +   SILING P       RG+RQGDP+S
Sbjct: 36   FDKIEWGFIEAIMKQMGFSEKWCNWIMTCITTTTYSILINGQPVRRIIPKRGIRQGDPIS 95

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            P L+ +  + LS  +   +   ++    + R G A SHLL+A D L+FCK T    + + 
Sbjct: 96   PYLYLLCTEGLSALIQASIKAKQLHGFKASRNGPAISHLLFAHDSLVFCKATLEECMTLV 155

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
                 YE+ S Q VN+ KS I FG  +  R +  L ++  + +     +YLG+P F G  
Sbjct: 156  NVLKLYEKASGQAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRN 215

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
            +      IA  +  K+  W    LS AG+  L
Sbjct: 216  KTNAFSFIAQTMDQKMDNWYNKLLSPAGKEVL 247



 Score = 77.0 bits (188), Expect(2) = 1e-44
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 8/189 (4%)
 Frame = -3

Query: 568 KNVFVNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPK 389
           K V + S++T+   +S   +  P+RL+ ++ +A+R F W+ +    K   VAW     PK
Sbjct: 244 KEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSKLNDPK 303

Query: 388 QEGGLGLKDLATMNRALLRKLTWKFMTSNCFAFSFLRTRYLKSFSDPRRRYL-------F 230
           + GGL ++DL   N ALL K +W+ +      FS L  R  K+   P+ R L        
Sbjct: 304 KMGGLAIRDLKDFNIALLAKQSWRILQQ---PFS-LMARVFKAKYFPKERLLDAKATSQS 359

Query: 229 SSLWPALREHYMSLLSETQWIIGKHSKVRFWQDNWLGTPLTEMLQIPNQISKTLTAL-VS 53
           S  W ++      +    ++I G  + ++ W+DNWL  PL              + L VS
Sbjct: 360 SYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWL--PLNPPRPPVGTCDSIYSQLKVS 417

Query: 52  NLYCNGYWH 26
           +L   G W+
Sbjct: 418 DLLIEGRWN 426


>gb|EMJ28392.1| hypothetical protein PRUPE_ppa019361mg, partial [Prunus persica]
          Length = 954

 Score =  115 bits (288), Expect(2) = 7e-43
 Identities = 65/201 (32%), Positives = 109/201 (54%), Gaps = 1/201 (0%)
 Frame = -1

Query: 1155 LRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLSPLLFCIAEDFLS 976
            L  FGF +++ + I     S   S+LINGSP G+F+ +RG+RQGDPLSP +F +  +   
Sbjct: 379  LNQFGFSNDWCARIMNCVSSTSFSMLINGSPYGHFKASRGIRQGDPLSPYIFILCMELFI 438

Query: 975  RYLDELVLNNEIQI-MSSPRGG*APSHLLYADDVLIFCKGTKRNMLAISKAFSFYEQLSR 799
            R+ + L  N +  +   S +GG   S+L++ADD LIF + T      I+     + ++S 
Sbjct: 439  RHFNSLAQNPKTHVGFLSSQGGDRISNLVFADDCLIFARSTAMAARNINCLLDNFAKVSG 498

Query: 798  QQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAPRKRWLQPIADK 619
            Q++N  KS +YF  ++ ++   +L  +  +Q  +   +YLG+            + + D+
Sbjct: 499  QRINLHKSTVYFSGNVHSQARNALSNLLQIQHKTTLGRYLGIHNISFWKDPANAKMMIDR 558

Query: 618  IKAKLTKWKGHTLSMAGRMCL 556
            I++K   WK  TLS  GR+ L
Sbjct: 559  IRSKFAGWKAQTLSRVGRLTL 579



 Score = 87.0 bits (214), Expect(2) = 7e-43
 Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 5/182 (2%)
 Frame = -3

Query: 556  VNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPKQEGG 377
            + + +T    H+   ++ P  + +EMN+  R F W  S+   K   VAW   C P+  GG
Sbjct: 580  IKASVTGVPNHTLSCFKCPKEVCREMNSCCRRFFWGNSI---KVPHVAWKDICLPQSLGG 636

Query: 376  LGLKDLATMNRALLRKLTWKFMT--SNCFAFSFLRTRYLKS--FSDPRRRYLFSSLWPAL 209
            LG++  A  N+  L KL W  +T  SN +A   L+ +YLK+  F    ++   SS W A+
Sbjct: 637  LGVRSAALFNKVALAKLGWICLTDSSNWWAQIMLK-KYLKNAGFLVTAKKTSHSSTWKAI 695

Query: 208  REHYMSLLSETQWIIGKHSKVRFWQDNWL-GTPLTEMLQIPNQISKTLTALVSNLYCNGY 32
             E    L    +WI+G    + FW  NW+   PL +++ +  + +  L A VS+   N  
Sbjct: 696  LEARSVLHKGIRWIVGNGQSIPFWTANWVFPFPLLDLIPVFLRNNLNLNAKVSDFIQNQA 755

Query: 31   WH 26
            W+
Sbjct: 756  WN 757


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  175 bits (444), Expect = 3e-41
 Identities = 88/181 (48%), Positives = 120/181 (66%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            FDTL+W+F+L VL+ FGF   F+ WI  I +SARLS+L+NG   G+F C+ GVRQGDPLS
Sbjct: 593  FDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFFTCSHGVRQGDPLS 652

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            PLLFC+ E+ LSR L     + ++  MS  RG   P+H+LYADDVLIFC GTKRN+  + 
Sbjct: 653  PLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTHILYADDVLIFCTGTKRNIRRLI 712

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
            K FS Y ++S Q +N AKS  +F ++++  R   +  +     GS    YLG P+F+G P
Sbjct: 713  KIFSQYSEVSGQLINNAKS-RFFTSAMTGSRVQMISSLLGFNVGSLPFTYLGCPIFRGKP 771

Query: 651  R 649
            +
Sbjct: 772  K 772



 Score = 93.2 bits (230), Expect = 2e-16
 Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 3/190 (1%)
 Frame = -3

Query: 583  IINGWKNVFVNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDR---KTLAVA 413
            +IN  K+ F  S +T S +         I  L   N     F + G    R   K   V+
Sbjct: 725  LINNAKSRFFTSAMTGSRVQM-------ISSLLGFNVGSLPFTYLGCPIFRGKPKVCTVS 777

Query: 412  WHHCCSPKQEGGLGLKDLATMNRALLRKLTWKFMTSNCFAFSFLRTRYLKSFSDPRRRYL 233
            W   C P  EGGL +K    +N A + KL W  ++SN      L+ R+  S   P R ++
Sbjct: 778  WKILCRPWSEGGLDIKSTRLINNAAMLKLAWNLLSSNSQWAVLLKRRFF-SQGQPIRYFV 836

Query: 232  FSSLWPALREHYMSLLSETQWIIGKHSKVRFWQDNWLGTPLTEMLQIPNQISKTLTALVS 53
             SS+W  ++ H   L     WI+G   ++  W +NWLG PL  +  I      + T  VS
Sbjct: 837  KSSVWHGVKNHMSILRQNKLWIVGTGDRINLWTNNWLGEPLVTLFNIDPFFHASFTGKVS 896

Query: 52   NLYCNGYWHL 23
             +  NG W L
Sbjct: 897  EVIVNGNWDL 906


>ref|XP_004242524.1| PREDICTED: uncharacterized protein LOC101258077 [Solanum
            lycopersicum]
          Length = 1454

 Score =  122 bits (305), Expect(2) = 4e-40
 Identities = 70/212 (33%), Positives = 107/212 (50%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            +D ++W++   VLR  GF   FI  I  I  +   SI+ING   G+F   RG++QGDPLS
Sbjct: 653  YDRVSWTYTCIVLRRMGFSEIFIDRIWRIMSNNWYSIVINGKRHGFFHSKRGLKQGDPLS 712

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            P LF +  +  SR L  L  N   +       G   +HL +ADD++IF      ++  I 
Sbjct: 713  PALFVLGAEVFSRQLSLLYQNQLYKGFHMESNGPKINHLSFADDIIIFSSTDNNSLNLIM 772

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
            K    YE++S Q+VN  KSF    ++ S      +  I+   R ++ + YLG PL+ G  
Sbjct: 773  KTIDQYEEVSDQKVNKDKSFFMVTSNTSHDIIEEISRITGFSRKNSPINYLGCPLYVGGQ 832

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
            R  +   I +K+  K+  W    L+  G++ L
Sbjct: 833  RIIYYSEIVEKVIKKIAGWHLKILNFGGKVTL 864



 Score = 71.2 bits (173), Expect(2) = 4e-40
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 2/185 (1%)
 Frame = -3

Query: 574  GWKNVFVNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCS 395
            G K   V  V+ S  IH+      P  +L  +   I +F W    + +K    +W++   
Sbjct: 859  GGKVTLVKHVLQSMPIHTLSAISPPKTILNSIKKVIADFFWGIEKDGKKYHWSSWNNMAF 918

Query: 394  PKQEGGLGLKDLATMNRALLRKLTWKFMTSNCFAFSFLRTRYLKSFSDPRRRYLF--SSL 221
            P  EGG+G++ +  M  A   K  W F T+N     FL+ +Y +  +   ++Y    S +
Sbjct: 919  PTNEGGIGVRLIEDMCTAFQYKQWWAFRTNNSLWSKFLKAKYNQRANPVAKKYNTGDSIV 978

Query: 220  WPALREHYMSLLSETQWIIGKHSKVRFWQDNWLGTPLTEMLQIPNQISKTLTALVSNLYC 41
            W  L  +   + S  +W I +     FW D WL  PL       + +S    ++V++   
Sbjct: 979  WRYLTRNRQKVESLIKWHI-QSGTCSFWWDCWLDKPLAMQC---DHVSSLNNSVVADFLI 1034

Query: 40   NGYWH 26
            NG W+
Sbjct: 1035 NGNWN 1039


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1229

 Score =  122 bits (305), Expect(2) = 4e-40
 Identities = 69/212 (32%), Positives = 106/212 (50%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            +D + W F+ +VL+ FGFHS +I W+     S   S LING+P+G    TRG+RQGDPLS
Sbjct: 476  YDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLS 535

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            P LF +  + LS          ++  +     G   +HLL+ADD + F K    +   +S
Sbjct: 536  PCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLS 595

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
            +  S Y + S Q +N+ KS + F +         +  I  +++     +YLG+P   G  
Sbjct: 596  EILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRR 655

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
            ++     I DKI+ K   W    LS AG+  +
Sbjct: 656  KRDIFGAIIDKIRQKSHSWASRFLSQAGKQVM 687



 Score = 71.2 bits (173), Expect(2) = 4e-40
 Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
 Frame = -3

Query: 568  KNVFVNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPK 389
            K V + +V+ S  ++S   ++ P  L +++ + +  F W    + RKT  VAW    +PK
Sbjct: 684  KQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPK 743

Query: 388  QEGGLGLKDLATMNRALLRKLTWKFMTS-NCFAFSFLRTRYL--KSFSDPRRRYLFSSLW 218
              GGLG +D+   N +LL KL W+ + S        L  +Y    SF + +     S  W
Sbjct: 744  NAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGW 803

Query: 217  PALREHYMSLLSETQWIIGKHSKVRFWQDNWL 122
             ++      L     W+I    KV  W D WL
Sbjct: 804  RSIIAGREILKEGLGWLITNGEKVSIWNDPWL 835


>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1044

 Score =  121 bits (303), Expect(2) = 4e-40
 Identities = 66/209 (31%), Positives = 101/209 (48%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            +D + W F+  V++  GFH  +ISWI     +   S L+NGS +G     RG+RQGDPLS
Sbjct: 407  YDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLS 466

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            P LF I  + LS    +  L+  +  +   +G    +HLL+ADD + FC+   ++     
Sbjct: 467  PFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFL 526

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
                 YE+ S Q +N +KS I F             +I  +Q      +YLG+P   G  
Sbjct: 527  CILKKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRK 586

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGR 565
            ++     I D+I+ +   W    LS AG+
Sbjct: 587  KRDLFNQIVDRIRQRSLSWSSRFLSTAGK 615



 Score = 72.0 bits (175), Expect(2) = 4e-40
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
 Frame = -3

Query: 568  KNVFVNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPK 389
            K   + SV+ S   ++   ++  + L K + +A+ +F W  S + +K   +AW      K
Sbjct: 615  KTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSADKKKMCWIAWSKMAKNK 674

Query: 388  QEGGLGLKDLATMNRALLRKLTWKFMTS-NCFAFSFLRTRYLK--SFSDPRRRYLFSSLW 218
            +EGGLG KD+   N ALL KL+W+ + S +C     L  +Y +  SF D       S  W
Sbjct: 675  KEGGLGFKDITNFNDALLAKLSWRIVQSPSCVLVRILLGKYCRTSSFLDCSVTAASSHGW 734

Query: 217  PALREHYMSLLSETQWIIGKHSKVRFWQDNWL 122
              +      + S+   +IG       W + WL
Sbjct: 735  RGICTGKDLIKSQLGKVIGSGLDTLVWNEPWL 766


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score =  125 bits (314), Expect(2) = 6e-40
 Identities = 73/212 (34%), Positives = 108/212 (50%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            +D + W F+ + +RG GF  ++I  I    +S R  +LING+P G    +RG+RQGDPLS
Sbjct: 581  YDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLS 640

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            P LF I  + L + L      N+I  +   RG    SHLL+ADD + +CK     +  I 
Sbjct: 641  PYLFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQII 700

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
            +    Y   S Q+VN+ KS IYFG  IS  R   +     ++R      YLG+P      
Sbjct: 701  RIIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGS 760

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
            +   L  + D++  K+  W+ + LS  G+  L
Sbjct: 761  KVATLSYLKDRLGKKVLGWQSNFLSPGGKEIL 792



 Score = 67.0 bits (162), Expect(2) = 6e-40
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
 Frame = -3

Query: 574  GWKNVFVNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCS 395
            G K + + +V  +   ++   ++ P  + +++ + +  F W    E R     AW H   
Sbjct: 787  GGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSR 846

Query: 394  PKQEGGLGLKDLATMNRALLRKLTWKFMT-SNCFAFSFLRTRYLKSFSDPRRRYLFSS-- 224
            PK  GGLG K++   N ALL K  W+ +T  +       ++RY  S SDP    L S   
Sbjct: 847  PKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYF-SKSDPLNAPLGSRPS 905

Query: 223  -LWPALREHYMSLLSETQWIIGKHSKVRFWQDNWLG 119
              W ++ E  + +    + +IG    +  W D W+G
Sbjct: 906  FAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIG 941


>ref|XP_004233578.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
            lycopersicum]
          Length = 955

 Score =  119 bits (297), Expect(2) = 1e-39
 Identities = 69/212 (32%), Positives = 108/212 (50%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            +D ++WS+   V+R  GF   FI  +  I  +   S++ING   G+F  TRG++QGDPLS
Sbjct: 153  YDRVSWSYTCLVVRKMGFGELFIDRVWRIMNNNWYSVVINGRRHGFFHSTRGLKQGDPLS 212

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            P LF +  +  SR L+ L  N           G   +HL +A+D++IF    ++++  I 
Sbjct: 213  PALFILGAELFSRQLNLLYHNQNYIGFQMDSNGPQINHLSFANDIIIFTSTDRQSLQLIV 272

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
            K    YE +S QQVN  KSF    T  +     S+   +     ++ + YLG PL+ G  
Sbjct: 273  KTIEEYELISDQQVNKDKSFFMVTTKTNQAIINSIKIETGFGIQNSPITYLGCPLYVGGQ 332

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
            R  +   I +KI  K++ W    L+  G++ L
Sbjct: 333  RIIYFSGIVEKIIRKISGWHAKILNFGGKITL 364



 Score = 72.4 bits (176), Expect(2) = 1e-39
 Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 2/185 (1%)
 Frame = -3

Query: 574 GWKNVFVNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCS 395
           G K   V  V+ S  IH       P   LK +   I +F W    + +K    +W     
Sbjct: 359 GGKITLVKHVLQSIPIHLLAAVSPPKTTLKYIKNVIADFFWGMDKDGKKYHWASWETLAY 418

Query: 394 PKQEGGLGLKDLATMNRALLRKLTWKFMTSNCFAFSFLRTRYLKSFSDPRRRYLF--SSL 221
           P  EGG+G+++L  +  A   K  W+F T N     FL+ +Y K  +   ++Y    S +
Sbjct: 419 PTNEGGIGVRNLEDVCIAFQYKQWWEFRTKNSLWSKFLKAKYCKRANPVAKKYDTGNSLV 478

Query: 220 WPALREHYMSLLSETQWIIGKHSKVRFWQDNWLGTPLTEMLQIPNQISKTLTALVSNLYC 41
           W     +  ++ S  +W I   S   FW DNWLG        I   IS      VS+   
Sbjct: 479 WRYFTRNRQAVESYIKWNIHSGSS-SFWWDNWLGNEALANQVI--NISSLNNIHVSDFLT 535

Query: 40  NGYWH 26
           NG W+
Sbjct: 536 NGIWN 540


>ref|XP_004301440.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 786

 Score =  120 bits (300), Expect(2) = 4e-39
 Identities = 72/212 (33%), Positives = 107/212 (50%)
 Frame = -1

Query: 1191 FDTLNWSFVLEVLRGFGFHSNFISWIETIFESARLSILINGSPEGYFQCTRGVRQGDPLS 1012
            +D + W F+   L  FGF  ++++ I     S   SI++NG P   F   RG+RQGDPLS
Sbjct: 20   YDRVEWDFLKAALIRFGFAQSWVNLIMACVSSVSFSIVLNGCPGKSFFPGRGLRQGDPLS 79

Query: 1011 PLLFCIAEDFLSRYLDELVLNNEIQIMSSPRGG*APSHLLYADDVLIFCKGTKRNMLAIS 832
            P LF I  + LS  L   V +  +  +   R G   SH+ +ADD L F K T  N+  + 
Sbjct: 80   PYLFLIISEVLSVRLTRAVQDKSLLGIKLCRRGPTLSHMFFADDALFFLKATLGNVCRLM 139

Query: 831  KAFSFYEQLSRQQVNWAKSFIYFGTSISARRAASLLEISSMQRGSNCLQYLGVPLFKGAP 652
            + F  Y + S Q +N  KS  YF  +   + +  L E+       +  +YLG+P   G  
Sbjct: 140  EIFKEYCKASGQLINGEKSSAYFSPNTPDQMSRLLGELMGFAEVEDPGKYLGLPTLWGRS 199

Query: 651  RKRWLQPIADKIKAKLTKWKGHTLSMAGRMCL 556
            +K  +  I D+++ KL  WK  +LS AG+  L
Sbjct: 200  KKEAVGYIVDRVQRKLVGWKQRSLSWAGKEIL 231



 Score = 69.7 bits (169), Expect(2) = 4e-39
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 3/155 (1%)
 Frame = -3

Query: 568 KNVFVNSVITSSFIHSFMIYRWPIRLLKEMNAAIRNFLWTGSVEDRKTLAVAWHHCCSPK 389
           K + + SV T+   +    +++P  +   +N+A+ NF W  +    +    +W      K
Sbjct: 228 KEILIKSVATAIPAYPMACFKFPKGVCDTINSALSNFWWGSTSTGNRIHWKSWELLGKTK 287

Query: 388 QEGGLGLKDLATMNRALLRKLTWKFMTS-NCFAFSFLRTRYLKS--FSDPRRRYLFSSLW 218
           +EGGLG +DL   N +LL K  W+ +   N    S L+ RY  +  F +  + Y  S  W
Sbjct: 288 EEGGLGFRDLHQFNMSLLAKQCWRLVEEPNSLWASVLKARYFPNCGFLEATKGYRASWSW 347

Query: 217 PALREHYMSLLSETQWIIGKHSKVRFWQDNWLGTP 113
            +L E    +     W +     ++ W D+W+  P
Sbjct: 348 ASLIEARDLVFQGCCWQVVNGKSIQIWHDSWIPPP 382