BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00005927
         (2515 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation spec...  1192   0.0  
emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]  1191   0.0  
ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation spec...  1165   0.0  
dbj|BAJ85804.1| predicted protein [Hordeum vulgare subsp. vulgare]   1153   0.0  
dbj|BAJ86772.1| predicted protein [Hordeum vulgare subsp. vulgare]   1152   0.0  
dbj|BAJ89790.1| predicted protein [Hordeum vulgare subsp. vulgare]   1152   0.0  
gb|EOX98110.1| Cleavage and polyadenylation specificity factor 7...  1151   0.0  
ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation spec...  1151   0.0  
ref|XP_006431752.1| hypothetical protein CICLE_v10000468mg [Citr...  1150   0.0  
gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indi...  1150   0.0  
ref|XP_006471216.1| PREDICTED: cleavage and polyadenylation spec...  1149   0.0  
ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group] g...  1148   0.0  
gb|EMT17383.1| Cleavage and polyadenylation specificity factor s...  1146   0.0  
ref|XP_003560694.1| PREDICTED: cleavage and polyadenylation spec...  1144   0.0  
ref|NP_001146407.1| uncharacterized protein LOC100279987 [Zea ma...  1143   0.0  
ref|XP_002323823.2| hypothetical protein POPTR_0017s11240g [Popu...  1141   0.0  
dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare]   1137   0.0  
ref|XP_002323824.2| cleavage and polyadenylation specificity fac...  1134   0.0  
ref|XP_002463500.1| hypothetical protein SORBIDRAFT_01g000850 [S...  1133   0.0  
ref|XP_004981011.1| PREDICTED: cleavage and polyadenylation spec...  1132   0.0  

>ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            3-I-like [Vitis vinifera]
          Length = 694

 Score = 1192 bits (3083), Expect = 0.0
 Identities = 590/692 (85%), Positives = 641/692 (92%), Gaps = 2/692 (0%)
 Frame = +3

Query: 96   SVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIHPAYSGM 275
            S G     +R   +++RE D+L+ITPLGAGNEVGRSCV+M++KGKT+LFDCGIHPAYSGM
Sbjct: 3    STGPPQSLKRPDSSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM 62

Query: 276  AALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLLSDY 455
            AALPYFDEIDPSTIDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKA+YKLLLSDY
Sbjct: 63   AALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDY 122

Query: 456  VKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIA 635
            VKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQT+EVNGIRFWCYTAGHVLGAAMFMVDIA
Sbjct: 123  VKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIA 182

Query: 636  GVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTDVIHSTI 815
            GVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPR VREKRFTDVIHSTI
Sbjct: 183  GVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHSTI 242

Query: 816  AQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINAMN 995
            +QGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYIN+MN
Sbjct: 243  SQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINSMN 302

Query: 996  ERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKWCSDKKN 1175
            ERIRNQFANSNPFDFKHISPLKSIENF+DVGPSVVMASPSGLQSGLSRQLFD WCSDKKN
Sbjct: 303  ERIRNQFANSNPFDFKHISPLKSIENFNDVGPSVVMASPSGLQSGLSRQLFDMWCSDKKN 362

Query: 1176 ACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSNFLKELM 1355
            ACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQV+YISFSAHADFAQTS FLKELM
Sbjct: 363  ACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFAQTSTFLKELM 422

Query: 1356 PPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAIGRMAEK 1535
            PPNIILVHGEANEMGRLKQKLITQFA++NTKIISPKNCQSVEMYF+SEKMAK IGR+AEK
Sbjct: 423  PPNIILVHGEANEMGRLKQKLITQFADRNTKIISPKNCQSVEMYFNSEKMAKTIGRLAEK 482

Query: 1536 TPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIKHRLKQI 1715
            TP  GETVSGLLVKKGFTYQIMAPDDLHVFSQLSTA++TQRI++PY GAFGVIKHRLKQI
Sbjct: 483  TPGVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYTGAFGVIKHRLKQI 542

Query: 1716 YESVVSL--EEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMILNISRE 1889
            YESV SL  EE++VP   VHERVT++ +SE H++L W+SDPISDMVSDS+VA++LNISRE
Sbjct: 543  YESVESLPDEESEVPAFRVHERVTVKHESEKHISLHWTSDPISDMVSDSIVALVLNISRE 602

Query: 1890 GPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKVDGKNG 2069
             PKV   +            A+KV++ALLVSLFGDVK+GE G LV++VDG+VA +D ++G
Sbjct: 603  IPKVVVESEAIKTEEENGKKAEKVIHALLVSLFGDVKLGENGNLVISVDGNVAHLDKQSG 662

Query: 2070 EVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
             VE ENEGLK+RVR A +RIQ+AV+PIPLS S
Sbjct: 663  NVESENEGLKERVRVAFQRIQNAVKPIPLSVS 694


>emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]
          Length = 687

 Score = 1191 bits (3082), Expect = 0.0
 Identities = 588/684 (85%), Positives = 639/684 (93%), Gaps = 2/684 (0%)
 Frame = +3

Query: 120  RREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIHPAYSGMAALPYFDE 299
            +R   +++RE D+L+ITPLGAGNEVGRSCV+M++KGKT+LFDCGIHPAYSGMAALPYFDE
Sbjct: 4    KRPDSSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE 63

Query: 300  IDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLLSDYVKVSKVSV 479
            IDPSTIDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKA+YKLLLSDYVKVSKVSV
Sbjct: 64   IDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKVSKVSV 123

Query: 480  EDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTG 659
            EDMLYDEQDILRSMDKIEVIDFHQT+EVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTG
Sbjct: 124  EDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTG 183

Query: 660  DYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTDVIHSTIAQGGRVLI 839
            DYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPR VREKRFTDVIHSTI+QGGRVLI
Sbjct: 184  DYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHSTISQGGRVLI 243

Query: 840  PAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINAMNERIRNQFA 1019
            PAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYIN+MNERIRNQFA
Sbjct: 244  PAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINSMNERIRNQFA 303

Query: 1020 NSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKWCSDKKNACVIPGYV 1199
            NSNPFDFKHISPLKSIENF+DVGPSVVMASPSGLQSGLSRQLFD WCSDKKNACVIPGYV
Sbjct: 304  NSNPFDFKHISPLKSIENFNDVGPSVVMASPSGLQSGLSRQLFDMWCSDKKNACVIPGYV 363

Query: 1200 VEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSNFLKELMPPNIILVH 1379
            VEGTLAKTIINEPKEVTLMNGLTAPLNMQV+YISFSAHADFAQTS FLKELMPPNIILVH
Sbjct: 364  VEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFAQTSTFLKELMPPNIILVH 423

Query: 1380 GEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAIGRMAEKTPEPGETV 1559
            GEANEMGRLKQKLITQFA++NTKIISPKNCQSVEMYF+SEKMAK IGR+AEKTP  GETV
Sbjct: 424  GEANEMGRLKQKLITQFADRNTKIISPKNCQSVEMYFNSEKMAKTIGRLAEKTPGVGETV 483

Query: 1560 SGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIKHRLKQIYESVVSL- 1736
            SGLLVKKGFTYQIMAPDDLHVFSQLSTA++TQRI++PY GAFGVIKHRLKQIYESV SL 
Sbjct: 484  SGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYTGAFGVIKHRLKQIYESVESLP 543

Query: 1737 -EEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMILNISREGPKVTAVA 1913
             EE++VP   VHERVT++ +SE H++L W+SDPISDMVSDS+VA++LNISRE PKV   +
Sbjct: 544  DEESEVPAFRVHERVTVKHESEKHISLHWTSDPISDMVSDSIVALVLNISREIPKVVVES 603

Query: 1914 XXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKVDGKNGEVECENEG 2093
                        A+KV++ALLVSLFGDVK+GE G LV++VDG+VA +D ++G VE ENEG
Sbjct: 604  EAIKTEEENGKKAEKVIHALLVSLFGDVKLGENGNLVISVDGNVAHLDKQSGNVESENEG 663

Query: 2094 LKQRVRTALRRIQSAVRPIPLSAS 2165
            LK+RVR A +RIQ+AV+PIPLS S
Sbjct: 664  LKERVRVAFQRIQNAVKPIPLSVS 687


>ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
            3-I-like [Vitis vinifera]
          Length = 693

 Score = 1165 bits (3013), Expect = 0.0
 Identities = 580/692 (83%), Positives = 632/692 (91%), Gaps = 2/692 (0%)
 Frame = +3

Query: 96   SVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIHPAYSGM 275
            S G +   +R   +++R  D+L+ITPLGAGNEVGRSCV+M++KGKT+LFDCGIHPAYSGM
Sbjct: 3    STGPSQSLKRPDSSLTR-GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM 61

Query: 276  AALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLLSDY 455
            AALPYFDEIDPSTIDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKA+YKLLLSDY
Sbjct: 62   AALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDY 121

Query: 456  VKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIA 635
            VKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQT+EVNGIRFWCYTAGHVLGAAMFMVDIA
Sbjct: 122  VKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIA 181

Query: 636  GVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTDVIHSTI 815
            GVRVLYTGDYSREEDRHLRAAEIPQF PDICIIESTYGVQLHQPR VREKRFTDVIHSTI
Sbjct: 182  GVRVLYTGDYSREEDRHLRAAEIPQFCPDICIIESTYGVQLHQPRHVREKRFTDVIHSTI 241

Query: 816  AQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINAMN 995
            +QGGRVLIPA+ALGRAQELLLILDEYWSNHPELHN+PIYYASPLAKRCMAVYQTYIN+MN
Sbjct: 242  SQGGRVLIPAYALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCMAVYQTYINSMN 301

Query: 996  ERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKWCSDKKN 1175
            ERIRNQFANSNPFDFKHISPLKSIENF+DVGPSVVMASP GLQSGLSRQLFD WCSDKKN
Sbjct: 302  ERIRNQFANSNPFDFKHISPLKSIENFNDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKN 361

Query: 1176 ACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSNFLKELM 1355
            ACVIPGYVV GTLAKTIINEPKEVTLMNGLTAPLNMQV+YISFSAHADFAQTS FLKELM
Sbjct: 362  ACVIPGYVVGGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFAQTSTFLKELM 421

Query: 1356 PPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAIGRMAEK 1535
            PPNIILVHGEANEMGRLKQKLITQFA+ NTKIISPKNCQSVEMYF+SEKMAK IGR+AEK
Sbjct: 422  PPNIILVHGEANEMGRLKQKLITQFADCNTKIISPKNCQSVEMYFNSEKMAKTIGRLAEK 481

Query: 1536 TPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIKHRLKQI 1715
            TPE GETVSGLLVKKGFTYQIMAPDDLHVF QLSTA++TQRI++PY GAFGVIKHRLKQI
Sbjct: 482  TPEVGETVSGLLVKKGFTYQIMAPDDLHVFWQLSTANVTQRITIPYTGAFGVIKHRLKQI 541

Query: 1716 YESVVSL--EEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMILNISRE 1889
            YESV SL  EE++VP   VHERVT++ DSE H++L W+SDPISDMVSDS+VA++LNIS E
Sbjct: 542  YESVESLPDEESEVPAFRVHERVTVKHDSEKHISLHWTSDPISDMVSDSIVALVLNISLE 601

Query: 1890 GPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKVDGKNG 2069
             PKV   +            A+KV++ALLVSLFGDVK+   G LV++VDG+V  +D ++G
Sbjct: 602  IPKVIVESEAIKTEEENGKKAEKVIHALLVSLFGDVKLEGNGNLVISVDGNVVHLDKQSG 661

Query: 2070 EVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
             VE ENEGLK+RVR A +RIQ+AV+PIP S S
Sbjct: 662  NVESENEGLKERVRVAFQRIQNAVKPIPPSVS 693


>dbj|BAJ85804.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 704

 Score = 1153 bits (2982), Expect = 0.0
 Identities = 573/704 (81%), Positives = 625/704 (88%), Gaps = 1/704 (0%)
 Frame = +3

Query: 57   HP-SKSTHPSMASCSVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKT 233
            HP  +S   +MAS +      KR   G   RE D++V+TPLGAG+EVGRSCVHMTFKG+T
Sbjct: 3    HPVRRSLSLTMASAATAPPAGKRPATGG--REGDQMVVTPLGAGSEVGRSCVHMTFKGRT 60

Query: 234  VLFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMT 413
            VLFDCGIHPAYSGMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTFKGRVFMT
Sbjct: 61   VLFDCGIHPAYSGMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMT 120

Query: 414  HATKAVYKLLLSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTA 593
            HATKA+Y+LLLSDYVKVSKVSVEDML+DEQDI+RSMDKIEVIDFHQT+EVNGIRFWCYTA
Sbjct: 121  HATKAIYRLLLSDYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTA 180

Query: 594  GHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRL 773
            GHVLGAAMFMVDIAGVR+LYTGDYSREEDRHL+AAEIPQFSPDICIIESTYGVQ HQPR 
Sbjct: 181  GHVLGAAMFMVDIAGVRILYTGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQPRH 240

Query: 774  VREKRFTDVIHSTIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAK 953
            VREKRFTD IH+T++QGGRVLIPAFALGRAQELLLILDEYWSNHPELH IPIYYASPLAK
Sbjct: 241  VREKRFTDAIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAK 300

Query: 954  RCMAVYQTYINAMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGL 1133
            +CMAVYQTYIN+MNERIRNQFA SNPF FKHI PL SI+NF DVGPSVVMASP  LQSGL
Sbjct: 301  KCMAVYQTYINSMNERIRNQFAQSNPFHFKHIDPLNSIDNFHDVGPSVVMASPGSLQSGL 360

Query: 1134 SRQLFDKWCSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAH 1313
            SRQLFDKWC+DKKN CVIPGY VEG+LAKTIINEP+EVTL NGLTAPLNMQ++YISFSAH
Sbjct: 361  SRQLFDKWCTDKKNTCVIPGYAVEGSLAKTIINEPREVTLANGLTAPLNMQIFYISFSAH 420

Query: 1314 ADFAQTSNFLKELMPPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFS 1493
            ADF QTS FL EL PPNIILVHGEANEMGRLKQKLITQF   NTKI+SPKNCQSVEMYFS
Sbjct: 421  ADFPQTSGFLGELCPPNIILVHGEANEMGRLKQKLITQFDGTNTKIVSPKNCQSVEMYFS 480

Query: 1494 SEKMAKAIGRMAEKTPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPY 1673
            SEKMAK IGR+AEK PE G++VSGLLVKKGFTYQIMAP+DL V++QLSTA+ITQRI+VPY
Sbjct: 481  SEKMAKTIGRLAEKVPEVGDSVSGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPY 540

Query: 1674 CGAFGVIKHRLKQIYESVVSLEEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSD 1853
             G+F VIK+RLKQIYESV S  E DVPTL VHERV IR DSE++VTLQWSSDPISDMVSD
Sbjct: 541  SGSFEVIKYRLKQIYESVESSTEEDVPTLTVHERVAIRLDSESYVTLQWSSDPISDMVSD 600

Query: 1854 SVVAMILNISREGPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTV 2033
            SVVAMILNI REGPKV  +              +KVVYAL+VSLFGDVKV EEGKL++TV
Sbjct: 601  SVVAMILNIGREGPKVVPIEEAVKTEEETERVGRKVVYALMVSLFGDVKVAEEGKLIITV 660

Query: 2034 DGDVAKVDGKNGEVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
            DGD A +DG++G+VEC N GLK+R++TA RRIQ AVRPI LSAS
Sbjct: 661  DGDAAHLDGRSGDVECANAGLKERIKTAFRRIQGAVRPILLSAS 704


>dbj|BAJ86772.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 704

 Score = 1152 bits (2979), Expect = 0.0
 Identities = 573/706 (81%), Positives = 625/706 (88%), Gaps = 1/706 (0%)
 Frame = +3

Query: 51   SFHP-SKSTHPSMASCSVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKG 227
            S HP  +S   +MAS +      KR   G   RE D++V+TPLGAG+EVGRSCVHMTFKG
Sbjct: 1    SVHPVRRSLSLTMASAATAPPAGKRPATGG--REGDQMVVTPLGAGSEVGRSCVHMTFKG 58

Query: 228  KTVLFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVF 407
            +TVLFDCGIHPAYSGMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTFKGRVF
Sbjct: 59   RTVLFDCGIHPAYSGMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVF 118

Query: 408  MTHATKAVYKLLLSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCY 587
            MTHATKA+Y+LLLSDYVKVSKVSVEDML+DEQDI+RSMDKIEVIDFHQT+EVNGIRFWCY
Sbjct: 119  MTHATKAIYRLLLSDYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCY 178

Query: 588  TAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQP 767
            TAGHVLGAAMFMVDIAGVR+ YTGDYSREEDRHL+AAEIPQFSPDICIIESTYGVQ HQP
Sbjct: 179  TAGHVLGAAMFMVDIAGVRIRYTGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQP 238

Query: 768  RLVREKRFTDVIHSTIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPL 947
            R VREKRFTD IH+T++QGGRVLIPAFALGRAQELLLILDEYWSNHPELH IPIYYASPL
Sbjct: 239  RHVREKRFTDAIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPL 298

Query: 948  AKRCMAVYQTYINAMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQS 1127
            AK+CMAVYQTYIN+MNERIRNQFA SNPF FKHI PL SI+NF DVGPSVVMASP  LQS
Sbjct: 299  AKKCMAVYQTYINSMNERIRNQFAQSNPFHFKHIDPLNSIDNFHDVGPSVVMASPGSLQS 358

Query: 1128 GLSRQLFDKWCSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFS 1307
            GLSRQLFDKWC+DKKN CVIPGY VEG+LAKTIINEP+EVTL NGLTAPLNMQ++YISFS
Sbjct: 359  GLSRQLFDKWCTDKKNTCVIPGYAVEGSLAKTIINEPREVTLANGLTAPLNMQIFYISFS 418

Query: 1308 AHADFAQTSNFLKELMPPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMY 1487
            AHADF QTS FL EL PPNIILVHGEANEMGRLKQKLITQF   NTKI+SPKNCQSVEMY
Sbjct: 419  AHADFPQTSGFLGELCPPNIILVHGEANEMGRLKQKLITQFDGTNTKIVSPKNCQSVEMY 478

Query: 1488 FSSEKMAKAIGRMAEKTPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISV 1667
            FSSEKMAK IGR+AEK PE G++VSGLLVKKGFTYQIMAP+DL V++QLSTA+ITQRI+V
Sbjct: 479  FSSEKMAKTIGRLAEKVPEVGDSVSGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAV 538

Query: 1668 PYCGAFGVIKHRLKQIYESVVSLEEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMV 1847
            PY G+F VIK+RLKQIYESV S  E DVPTL VHERV IR DSE++VTLQWSSDPISDMV
Sbjct: 539  PYSGSFEVIKYRLKQIYESVESSTEEDVPTLTVHERVAIRLDSESYVTLQWSSDPISDMV 598

Query: 1848 SDSVVAMILNISREGPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVV 2027
            SDSVVAMILNI REGPKV  +              +KVVYAL+VSLFGDVKV EEGKL++
Sbjct: 599  SDSVVAMILNIGREGPKVVPIEEAVKTEEETERVGRKVVYALMVSLFGDVKVAEEGKLII 658

Query: 2028 TVDGDVAKVDGKNGEVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
            TVDGD A +DG++G+VEC N GLK+R++TA RRIQ AVRPI LSAS
Sbjct: 659  TVDGDAAHLDGRSGDVECANAGLKERIKTAFRRIQGAVRPILLSAS 704


>dbj|BAJ89790.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 704

 Score = 1152 bits (2979), Expect = 0.0
 Identities = 573/706 (81%), Positives = 625/706 (88%), Gaps = 1/706 (0%)
 Frame = +3

Query: 51   SFHP-SKSTHPSMASCSVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKG 227
            S HP  +S   +MAS +      KR   G   RE D++V+TPLGAG+EVGRSCVHMTFKG
Sbjct: 1    SVHPVRRSLSLTMASAATAPPAGKRPATGG--REGDQMVVTPLGAGSEVGRSCVHMTFKG 58

Query: 228  KTVLFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVF 407
            +TVLFDCGIHPAYSGMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTFKGRVF
Sbjct: 59   RTVLFDCGIHPAYSGMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVF 118

Query: 408  MTHATKAVYKLLLSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCY 587
            MTHATKA+Y+LLLSDYVKVSKVSVEDML+DEQDI+RSMDKIEVIDFHQT+EVNGIRFWCY
Sbjct: 119  MTHATKAIYRLLLSDYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCY 178

Query: 588  TAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQP 767
            TAGHVLGAAMFMVDIAGVR+LYTGDYSREEDRHL+AAEIPQFSPDICIIESTYGVQ HQP
Sbjct: 179  TAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQP 238

Query: 768  RLVREKRFTDVIHSTIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPL 947
            R VREKRFTD IH+T++QGGRVLIPAFALGRAQELLLILDEYWSNHPELH IPIYYASPL
Sbjct: 239  RHVREKRFTDAIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPL 298

Query: 948  AKRCMAVYQTYINAMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQS 1127
            AK+CMAVYQTYIN+MNERIRNQFA SNPF FKHI PL SI+NF DVGPSVVMASP  LQS
Sbjct: 299  AKKCMAVYQTYINSMNERIRNQFAQSNPFHFKHIDPLNSIDNFHDVGPSVVMASPGSLQS 358

Query: 1128 GLSRQLFDKWCSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFS 1307
            GLSRQLFDKWC+DKKN CVIPGY VEG+LAKTIINEP+EVTL NGLTAPLNMQ++YISFS
Sbjct: 359  GLSRQLFDKWCTDKKNTCVIPGYAVEGSLAKTIINEPREVTLANGLTAPLNMQIFYISFS 418

Query: 1308 AHADFAQTSNFLKELMPPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMY 1487
            AHADF QTS FL EL PPNIILVHGEANEMGRLKQKLITQF   NTKI+SPKNCQSVEMY
Sbjct: 419  AHADFPQTSGFLGELCPPNIILVHGEANEMGRLKQKLITQFDGTNTKIVSPKNCQSVEMY 478

Query: 1488 FSSEKMAKAIGRMAEKTPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISV 1667
            FSSEKMA  IGR+AEK PE G++VSGLLVKKGFTYQIMAP+DL V++QLSTA+ITQRI+V
Sbjct: 479  FSSEKMAMTIGRLAEKVPEVGDSVSGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAV 538

Query: 1668 PYCGAFGVIKHRLKQIYESVVSLEEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMV 1847
            PY G+F VIK+RLKQIYESV S  E DVPTL VHERV IR DSE++VTLQWSSDPISDMV
Sbjct: 539  PYSGSFEVIKYRLKQIYESVESSTEEDVPTLTVHERVAIRLDSESYVTLQWSSDPISDMV 598

Query: 1848 SDSVVAMILNISREGPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVV 2027
            SDSVVAMILNI REGPKV  +              +KVVYAL+VSLFGDVKV EEGKL++
Sbjct: 599  SDSVVAMILNIGREGPKVVPIEEAVKTEEETERVGRKVVYALMVSLFGDVKVAEEGKLII 658

Query: 2028 TVDGDVAKVDGKNGEVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
            TVDGD A +DG++G+VEC N GLK+R++TA RRIQ AVRPI LSAS
Sbjct: 659  TVDGDAAHLDGRSGDVECANAGLKERIKTAFRRIQGAVRPILLSAS 704


>gb|EOX98110.1| Cleavage and polyadenylation specificity factor 73-I [Theobroma
            cacao]
          Length = 694

 Score = 1151 bits (2978), Expect = 0.0
 Identities = 564/692 (81%), Positives = 631/692 (91%), Gaps = 2/692 (0%)
 Frame = +3

Query: 96   SVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIHPAYSGM 275
            S G     +R    ++RE D+L ITPLGAGNEVGRSCV+M++K KTVLFDCGIHP YSGM
Sbjct: 3    STGQPSSLKRRDAPLTREGDQLTITPLGAGNEVGRSCVYMSYKSKTVLFDCGIHPGYSGM 62

Query: 276  AALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLLSDY 455
            AALPYFDEIDPSTID LLITHFHLDHAASLPYFLEKTTF+GRVFMTHATKA+YKL+L+DY
Sbjct: 63   AALPYFDEIDPSTIDALLITHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLILTDY 122

Query: 456  VKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIA 635
            VKVSKVSVEDML+DEQDI RSMDKIEVIDFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIA
Sbjct: 123  VKVSKVSVEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIA 182

Query: 636  GVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTDVIHSTI 815
            GVRVLYTGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQLHQPR +REKRFTD +HSTI
Sbjct: 183  GVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRHIREKRFTDAVHSTI 242

Query: 816  AQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINAMN 995
            +QGGRVLIPAFALGR+QELLLILDEYWSNHPELHNIPIYYASPLAK+CMAVYQTYI +MN
Sbjct: 243  SQGGRVLIPAFALGRSQELLLILDEYWSNHPELHNIPIYYASPLAKKCMAVYQTYILSMN 302

Query: 996  ERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKWCSDKKN 1175
            ERIRNQFANSNPF FKHISPL SIE+F DVGPSVVMASP GLQSGLSRQLFD WCSDK+N
Sbjct: 303  ERIRNQFANSNPFKFKHISPLNSIEDFSDVGPSVVMASPGGLQSGLSRQLFDMWCSDKRN 362

Query: 1176 ACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSNFLKELM 1355
            AC++PGYVVEGTLAKTIINEPKEVTLMNGLTAPL MQV+YISFSAHAD+AQTS FLKELM
Sbjct: 363  ACILPGYVVEGTLAKTIINEPKEVTLMNGLTAPLCMQVHYISFSAHADYAQTSTFLKELM 422

Query: 1356 PPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAIGRMAEK 1535
            PPNIILVHGEANEMGRLKQKLIT+  + NTKII+PKNCQSVEMYF+SEKMAK IGR+AEK
Sbjct: 423  PPNIILVHGEANEMGRLKQKLITELTDGNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482

Query: 1536 TPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIKHRLKQI 1715
            TPE GETVSG+LVKKGFTYQIMAPDD+H+FSQLSTA+ITQRI++P+ GAFGVIKHRL+QI
Sbjct: 483  TPEVGETVSGVLVKKGFTYQIMAPDDIHIFSQLSTANITQRITIPFAGAFGVIKHRLEQI 542

Query: 1716 YESVVSL--EEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMILNISRE 1889
            YESV S   EE+ VPTL VH+RVT++QDS+ H++L W+SDPISDMVSDS+VA++LNISRE
Sbjct: 543  YESVESSTDEESGVPTLRVHDRVTVKQDSDKHISLHWTSDPISDMVSDSIVALVLNISRE 602

Query: 1890 GPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKVDGKNG 2069
             PKV   +            A+KV++ALLVSLFGDVK+GE GKL+++VDG+VA +D ++G
Sbjct: 603  IPKVVVESEAVKMEEENGKKAEKVIHALLVSLFGDVKLGENGKLMISVDGNVAHLDKQSG 662

Query: 2070 EVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
            +VE ENEGLK+RV+TA RRIQSAV+PIPLSAS
Sbjct: 663  DVESENEGLKERVKTAFRRIQSAVKPIPLSAS 694


>ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            3-I-like [Brachypodium distachyon]
          Length = 768

 Score = 1151 bits (2977), Expect = 0.0
 Identities = 576/716 (80%), Positives = 632/716 (88%), Gaps = 1/716 (0%)
 Frame = +3

Query: 21   VLGEPLSPPISFHPSKSTHPSMASCSVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGR 200
            V    LS P+   PS S   +MAS +      KR   G   RE D++VITPLGAG+EVGR
Sbjct: 57   VQSRSLSLPL--RPSLSGPATMASVATAPPAGKRPTSGG--REGDQMVITPLGAGSEVGR 112

Query: 201  SCVHMTFKGKTVLFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLE 380
            SCVHMTFKG+TVLFDCGIHPAYSGMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLE
Sbjct: 113  SCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLE 172

Query: 381  KTTFKGRVFMTHATKAVYKLLLSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTME 560
            KTTFKGRVFMTHATKA+Y+LLLSDYVKVSKVSVEDML+DEQDI+RSMDKIEVIDFHQT+E
Sbjct: 173  KTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLE 232

Query: 561  VNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIES 740
            VNGIRFWCYTAGHVLGAAMFMVDIAGVR+LYTGDYSREEDRHL+AAEIPQFSPD+CI+ES
Sbjct: 233  VNGIRFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLKAAEIPQFSPDVCIVES 292

Query: 741  TYGVQLHQPRLVREKRFTDVIHSTIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHN 920
            TYGVQ HQPR VREKRFTD IH+T++QGGRVLIPAFALGRAQELLLILDEYWSNHPELH 
Sbjct: 293  TYGVQQHQPRHVREKRFTDAIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHK 352

Query: 921  IPIYYASPLAKRCMAVYQTYINAMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVV 1100
            IPIYYASPLAK+CMAVYQTYIN+MNERIRNQFA SNPF FKHI PL SI+NF DVGPSVV
Sbjct: 353  IPIYYASPLAKKCMAVYQTYINSMNERIRNQFAQSNPFHFKHIEPLNSIDNFHDVGPSVV 412

Query: 1101 MASPSGLQSGLSRQLFDKWCSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLN 1280
            MASP  LQSGLSRQLFDKWC+DKKN CVIPG+V+EGTL+KTIINEP+EVTL NGLTAPL+
Sbjct: 413  MASPGTLQSGLSRQLFDKWCTDKKNTCVIPGFVIEGTLSKTIINEPREVTLANGLTAPLH 472

Query: 1281 MQVYYISFSAHADFAQTSNFLKELMPPNIILVHGEANEMGRLKQKLITQFAEKNTKIISP 1460
            MQ++YISFSAHADF QTS FL EL PPNIILVHGEANEMGRLKQKLITQF   N KI+SP
Sbjct: 473  MQIFYISFSAHADFPQTSAFLDELRPPNIILVHGEANEMGRLKQKLITQFDGTNIKIVSP 532

Query: 1461 KNCQSVEMYFSSEKMAKAIGRMAEKTPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLST 1640
            KNCQSVEMYFSSEKMAK IGR+AEK PE GE+VSGLLVKKGFTYQIMAP+DL V++QLST
Sbjct: 533  KNCQSVEMYFSSEKMAKTIGRLAEKVPEVGESVSGLLVKKGFTYQIMAPEDLRVYTQLST 592

Query: 1641 ASITQRISVPYCGAFGVIKHRLKQIYESVVSL-EEADVPTLVVHERVTIRQDSENHVTLQ 1817
            A+ITQRI+VPY G+F VIK+RLKQIYESV S  EE DVPTL+VHERVTIR +SE++VTLQ
Sbjct: 593  ANITQRIAVPYSGSFEVIKYRLKQIYESVESCPEEPDVPTLIVHERVTIRLESESYVTLQ 652

Query: 1818 WSSDPISDMVSDSVVAMILNISREGPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDV 1997
            WSSDPISDMVSDSVVAMILNI REGPKV  V             A+KVVYAL+VSLFGDV
Sbjct: 653  WSSDPISDMVSDSVVAMILNIGREGPKVVPVEEAEKTQEETEKVARKVVYALMVSLFGDV 712

Query: 1998 KVGEEGKLVVTVDGDVAKVDGKNGEVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
            KV E GK V++VDGDVA +DG +G+VECEN  LK+R++TA RRIQ AVRPIPLS+S
Sbjct: 713  KVAEGGKFVISVDGDVAHLDGSSGDVECENAALKERIKTAFRRIQGAVRPIPLSSS 768


>ref|XP_006431752.1| hypothetical protein CICLE_v10000468mg [Citrus clementina]
            gi|557533874|gb|ESR44992.1| hypothetical protein
            CICLE_v10000468mg [Citrus clementina]
          Length = 694

 Score = 1150 bits (2976), Expect = 0.0
 Identities = 568/691 (82%), Positives = 632/691 (91%), Gaps = 2/691 (0%)
 Frame = +3

Query: 96   SVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIHPAYSGM 275
            SVG     +R    VSRE D+L+ITPLGAGNEVGRSCV+M++KGKT+LFDCGIHPAYSGM
Sbjct: 3    SVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM 62

Query: 276  AALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLLSDY 455
            AALPYFDEIDPS IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA+YKLLL+DY
Sbjct: 63   AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDY 122

Query: 456  VKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIA 635
            VKVSKVSVEDML+DEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIA
Sbjct: 123  VKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIA 182

Query: 636  GVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTDVIHSTI 815
            GVRVLYTGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQLHQPR +REKRFTDVIHSTI
Sbjct: 183  GVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTI 242

Query: 816  AQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINAMN 995
            +QGGRVLIPAFALGRAQELLLILDEYWSNHPE HNIPIYYASPLAK+CMAVYQTYI +MN
Sbjct: 243  SQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN 302

Query: 996  ERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKWCSDKKN 1175
            ERIRNQFANSNPF FKHISPL SI++F DVGPSVVMASP GLQSGLSRQLFD WCSDKKN
Sbjct: 303  ERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362

Query: 1176 ACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSNFLKELM 1355
            ACVIPGYVVEGTLAKTII+EPKEVTLMNGLTAPLNMQV+YISFSAHAD+AQTS FLKELM
Sbjct: 363  ACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELM 422

Query: 1356 PPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAIGRMAEK 1535
            PPNIILVHGE++EMGRLK KL+T+ A+ NTKII+PKNCQSVEMYF+SEKMAK IGR+AEK
Sbjct: 423  PPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482

Query: 1536 TPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIKHRLKQI 1715
            TPE GETVSG+LVKKGFTYQIMAPDDLH+FSQLSTA+ITQRI+VPY GAFGVIK+RL+QI
Sbjct: 483  TPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRITVPYSGAFGVIKYRLEQI 542

Query: 1716 YESVVSL--EEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMILNISRE 1889
            YESV S   EE+ VPTL VH+RVT++QDSE H+++ W+SDPISDMVSDSVVA++LNI+RE
Sbjct: 543  YESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSVVALVLNINRE 602

Query: 1890 GPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKVDGKNG 2069
             PKV   +            A+KV++ALLVSLFGDVK+G+ GK+V+ VDG+VA +D ++G
Sbjct: 603  VPKVVVESEAIKSEEESGKKAEKVIHALLVSLFGDVKLGDNGKVVINVDGNVAHLDKQSG 662

Query: 2070 EVECENEGLKQRVRTALRRIQSAVRPIPLSA 2162
            +VE ENEGLK+RV+TA  RIQ AV+PIPLSA
Sbjct: 663  DVESENEGLKERVKTAFMRIQRAVKPIPLSA 693


>gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indica Group]
          Length = 700

 Score = 1150 bits (2974), Expect = 0.0
 Identities = 571/700 (81%), Positives = 632/700 (90%), Gaps = 1/700 (0%)
 Frame = +3

Query: 69   STHPSMASCSVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDC 248
            S+  + A+ + GG   KR+  G   RE D+L+ITPLGAGNEVGRSCV+M+FKG+TVLFDC
Sbjct: 3    SSVAAAAAPTAGGPPGKRQASGG--REGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDC 60

Query: 249  GIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA 428
            GIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA
Sbjct: 61   GIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA 120

Query: 429  VYKLLLSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLG 608
            +Y+LLLSDYVKVSKVSVEDML+DEQDILRSMDKIEVIDFHQT+EVNGIRFWCYTAGHVLG
Sbjct: 121  IYRLLLSDYVKVSKVSVEDMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLG 180

Query: 609  AAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKR 788
            AAMFMVDIAGVRVLYTGDYSREEDRHL+AAE+PQFSPDICIIESTYGVQ HQPR VREKR
Sbjct: 181  AAMFMVDIAGVRVLYTGDYSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKR 240

Query: 789  FTDVIHSTIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAV 968
            FTDVIH+T++QGGRVLIPAFALGRAQELLLILDEYW+NHPELH IPIYYASPLAK+CMAV
Sbjct: 241  FTDVIHTTVSQGGRVLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAV 300

Query: 969  YQTYINAMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLF 1148
            YQTYIN+MNERIRNQFA SNPF FKHI  L SI+NF DVGPSVVMASP GLQSGLSRQLF
Sbjct: 301  YQTYINSMNERIRNQFAQSNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLF 360

Query: 1149 DKWCSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQ 1328
            DKWC+DKKN+CVIPGYVVEGTLAKTIINEP+EVTL NGLTAPL+MQV+YISFSAHADF Q
Sbjct: 361  DKWCTDKKNSCVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQ 420

Query: 1329 TSNFLKELMPPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMA 1508
            TS FL EL PPNI+LVHGEANEM RLKQKLI+QF   N K+++PKNCQSVEMYFSSEKMA
Sbjct: 421  TSTFLDELQPPNIVLVHGEANEMSRLKQKLISQFDGTNIKVVNPKNCQSVEMYFSSEKMA 480

Query: 1509 KAIGRMAEKTPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFG 1688
            K IGR+AEK PE GE+V+GLLVKKGFTYQIMAP+DL V++QLSTA+ITQRI+VPY G+F 
Sbjct: 481  KTIGRLAEKVPEAGESVNGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFE 540

Query: 1689 VIKHRLKQIYESV-VSLEEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVA 1865
            VIK+RLKQIYESV  S EE+DVPTL+VHERVTIR +SE++VTLQWSSDPISDMVSDSVVA
Sbjct: 541  VIKYRLKQIYESVESSTEESDVPTLIVHERVTIRLESESYVTLQWSSDPISDMVSDSVVA 600

Query: 1866 MILNISREGPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDV 2045
            M+LNI REGPKV  V             AQKVVYAL+VSLFGDVKV EEGKLV++VDG V
Sbjct: 601  MVLNIGREGPKVVPVEEAVKTQEETERVAQKVVYALMVSLFGDVKVAEEGKLVISVDGQV 660

Query: 2046 AKVDGKNGEVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
            A +DG++G+VECEN  L++R++TA RRIQ AVRPIPL +S
Sbjct: 661  AHLDGRSGDVECENATLRERIKTAFRRIQGAVRPIPLISS 700


>ref|XP_006471216.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            3-I-like isoform X1 [Citrus sinensis]
          Length = 694

 Score = 1149 bits (2972), Expect = 0.0
 Identities = 568/691 (82%), Positives = 631/691 (91%), Gaps = 2/691 (0%)
 Frame = +3

Query: 96   SVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIHPAYSGM 275
            SVG     +R    VSRE D+L+ITPLGAGNEVGRSCV+M++KGKT+LFDCGIHPAYSGM
Sbjct: 3    SVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM 62

Query: 276  AALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLLSDY 455
            AALPYFDEIDPS IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA+YKLLL+DY
Sbjct: 63   AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDY 122

Query: 456  VKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIA 635
            VKVSKVSVEDML+DEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIA
Sbjct: 123  VKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIA 182

Query: 636  GVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTDVIHSTI 815
            GVRVLYTGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQLHQPR +REKRFTDVIHSTI
Sbjct: 183  GVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTI 242

Query: 816  AQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINAMN 995
            +QGGRVLIPAFALGRAQELLLILDEYWSNHPE HNIPIYYASPLAK+CMAVYQTYI +MN
Sbjct: 243  SQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN 302

Query: 996  ERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKWCSDKKN 1175
            ERIRNQFANSNPF FKHISPL SI++F DVGPSVVMASP GLQSGLSRQLFD WCSDKKN
Sbjct: 303  ERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362

Query: 1176 ACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSNFLKELM 1355
            ACVIPGYVVEGTLAKTII+EPKEVTLMNGLTAPLNMQV+YISFSAHAD+AQTS FLKELM
Sbjct: 363  ACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELM 422

Query: 1356 PPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAIGRMAEK 1535
            PPNIILVHGE++EMGRLK KL+T+ A+ NTKII+PKNCQSVEMYF+SEKMAK IGR+AEK
Sbjct: 423  PPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482

Query: 1536 TPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIKHRLKQI 1715
            TPE GETVSG+LVKKGFTYQIMAPDDLH+FSQLSTA+ITQRI+VPY GAFGVIK+RL+QI
Sbjct: 483  TPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRITVPYSGAFGVIKYRLEQI 542

Query: 1716 YESVVSL--EEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMILNISRE 1889
            YESV S   EE+ VPTL VH+RVT++QDSE H+++ W+SDPISDMVSDSVVA++LNI+RE
Sbjct: 543  YESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSVVALVLNINRE 602

Query: 1890 GPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKVDGKNG 2069
             PKV   +            A+KV++ALLVSLFGDVK+G  GK+V+ VDG+VA +D ++G
Sbjct: 603  VPKVVVESEAIKSEEESGKKAEKVIHALLVSLFGDVKLGGNGKVVINVDGNVAHLDKQSG 662

Query: 2070 EVECENEGLKQRVRTALRRIQSAVRPIPLSA 2162
            +VE ENEGLK+RV+TA  RIQ AV+PIPLSA
Sbjct: 663  DVESENEGLKERVKTAFMRIQRAVKPIPLSA 693


>ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group] gi|27573349|gb|AAO20067.1|
            putative cleavage and polyadenylation specifity factor
            protein [Oryza sativa Japonica Group]
            gi|29126360|gb|AAO66552.1| putative cleavage and
            polyadenylation specifity factor [Oryza sativa Japonica
            Group] gi|108712151|gb|ABF99946.1| Cleavage and
            polyadenylation specificity factor, 73 kDa subunit,
            putative, expressed [Oryza sativa Japonica Group]
            gi|113550399|dbj|BAF13842.1| Os03g0852900 [Oryza sativa
            Japonica Group] gi|125588676|gb|EAZ29340.1| hypothetical
            protein OsJ_13407 [Oryza sativa Japonica Group]
          Length = 700

 Score = 1148 bits (2970), Expect = 0.0
 Identities = 571/700 (81%), Positives = 631/700 (90%), Gaps = 1/700 (0%)
 Frame = +3

Query: 69   STHPSMASCSVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDC 248
            S+  + A+ + GG   KR+  G   RE D+L+ITPLGAGNEVGRSCV+M+FKG+TVLFDC
Sbjct: 3    SSVAAAAAPTAGGPPGKRQASGG--REGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDC 60

Query: 249  GIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA 428
            GIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA
Sbjct: 61   GIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA 120

Query: 429  VYKLLLSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLG 608
            +Y+LLLSDYVKVSKVSVEDML+DEQDILRSMDKIEVIDFHQT+EVNGIRFWCYTAGHVLG
Sbjct: 121  IYRLLLSDYVKVSKVSVEDMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLG 180

Query: 609  AAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKR 788
            AAMFMVDIAGVRVLYTGDYSREEDRHL+AAE+PQFSPDICIIESTYGVQ HQPR VREKR
Sbjct: 181  AAMFMVDIAGVRVLYTGDYSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKR 240

Query: 789  FTDVIHSTIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAV 968
            FTDVIH+T++QGGRVLIPAFALGRAQELLLILDEYW+NHPELH IPIYYASPLAK+CMAV
Sbjct: 241  FTDVIHTTVSQGGRVLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAV 300

Query: 969  YQTYINAMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLF 1148
            YQTYIN+MNERIRNQFA SNPF FKHI  L SI+NF DVGPSVVMASP GLQSGLSRQLF
Sbjct: 301  YQTYINSMNERIRNQFAQSNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLF 360

Query: 1149 DKWCSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQ 1328
            DKWC+DKKN+CVIPGYVVEGTLAKTIINEP+EVTL NGLTAPL+MQV+YISFSAHADF Q
Sbjct: 361  DKWCTDKKNSCVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQ 420

Query: 1329 TSNFLKELMPPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMA 1508
            TS FL EL PPNI+LVHGEANEM RLKQKLI+QF   N K+++PKNCQSVEMYFSSEKMA
Sbjct: 421  TSTFLDELQPPNIVLVHGEANEMSRLKQKLISQFDGTNIKVVNPKNCQSVEMYFSSEKMA 480

Query: 1509 KAIGRMAEKTPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFG 1688
            K IGR+AEK PE GE+V+GLLVKKGFTYQIMAP+DL V++QLSTA+ITQRI+VPY G+F 
Sbjct: 481  KTIGRLAEKVPEAGESVNGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFE 540

Query: 1689 VIKHRLKQIYESV-VSLEEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVA 1865
            VIK+RLKQIYESV  S EE+DVPTL+VHERVTIR +SE++VTLQWSSDPISDMVSDSVVA
Sbjct: 541  VIKYRLKQIYESVESSTEESDVPTLIVHERVTIRLESESYVTLQWSSDPISDMVSDSVVA 600

Query: 1866 MILNISREGPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDV 2045
            M+LNI REGPKV  V             AQKVVYAL+VSLFGDVKV EEGKLV++VDG V
Sbjct: 601  MVLNIGREGPKVVPVEEAVKTQEETERVAQKVVYALMVSLFGDVKVAEEGKLVISVDGQV 660

Query: 2046 AKVDGKNGEVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
            A +DG++G VECEN  L++R++TA RRIQ AVRPIPL +S
Sbjct: 661  AHLDGRSGGVECENATLRERIKTAFRRIQGAVRPIPLISS 700


>gb|EMT17383.1| Cleavage and polyadenylation specificity factor subunit 3 [Aegilops
            tauschii]
          Length = 720

 Score = 1146 bits (2964), Expect = 0.0
 Identities = 576/722 (79%), Positives = 624/722 (86%), Gaps = 28/722 (3%)
 Frame = +3

Query: 84   MASCSVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVL-------- 239
            MASC+      KR   G   RE D++VITPLGAG+EVGRSCVHMTFKG+TVL        
Sbjct: 1    MASCATTPPAGKRPATGG--REGDQMVITPLGAGSEVGRSCVHMTFKGRTVLVSTPKPYL 58

Query: 240  --------------------FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAA 359
                                FDCGIHPAYSGMAALPYFDEIDPS IDVLL+THFHLDHAA
Sbjct: 59   PPLLRLAPTDLFLARGWLVQFDCGIHPAYSGMAALPYFDEIDPSAIDVLLVTHFHLDHAA 118

Query: 360  SLPYFLEKTTFKGRVFMTHATKAVYKLLLSDYVKVSKVSVEDMLYDEQDILRSMDKIEVI 539
            SLPYFLEKTTFKGRVFMTHATKA+Y+LLLSDYVKVSKVSVEDML+DEQDI+RSMDKIEVI
Sbjct: 119  SLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSVEDMLFDEQDIIRSMDKIEVI 178

Query: 540  DFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSP 719
            DFHQT+EVNGIRFWCYTAGHVLGAAMFMVDIAGVR+LYTGDYSREEDRHL+AAEIPQFSP
Sbjct: 179  DFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLKAAEIPQFSP 238

Query: 720  DICIIESTYGVQLHQPRLVREKRFTDVIHSTIAQGGRVLIPAFALGRAQELLLILDEYWS 899
            DICIIESTYGVQ HQPR VREKRFTD IH+T++QGGRVLIPAFALGRAQELLLILDEYWS
Sbjct: 239  DICIIESTYGVQQHQPRHVREKRFTDAIHNTVSQGGRVLIPAFALGRAQELLLILDEYWS 298

Query: 900  NHPELHNIPIYYASPLAKRCMAVYQTYINAMNERIRNQFANSNPFDFKHISPLKSIENFD 1079
            NHPELH IPIYYASPLAK+CMAVYQTYIN+MNERIRNQFA SNPF FKHI PL SI+NF 
Sbjct: 299  NHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQFAQSNPFHFKHIDPLNSIDNFH 358

Query: 1080 DVGPSVVMASPSGLQSGLSRQLFDKWCSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMN 1259
            DVGPSVVMASP  LQSGLSRQLFDKWC+DKKN CVIPGY VEG+LAKTIINEP+EVTL N
Sbjct: 359  DVGPSVVMASPGSLQSGLSRQLFDKWCTDKKNTCVIPGYAVEGSLAKTIINEPREVTLAN 418

Query: 1260 GLTAPLNMQVYYISFSAHADFAQTSNFLKELMPPNIILVHGEANEMGRLKQKLITQFAEK 1439
            GLTAPLNMQ++YISFSAHADF QTS FL+EL PPNIILVHGEANEMGRLKQKLITQF   
Sbjct: 419  GLTAPLNMQIFYISFSAHADFPQTSGFLEELRPPNIILVHGEANEMGRLKQKLITQFDGT 478

Query: 1440 NTKIISPKNCQSVEMYFSSEKMAKAIGRMAEKTPEPGETVSGLLVKKGFTYQIMAPDDLH 1619
            NTKI+SPKNCQSVEMYFSSEKMAK IGR+AEK PE GETVSGLLVKKGFTYQIMAP+DL 
Sbjct: 479  NTKIVSPKNCQSVEMYFSSEKMAKTIGRLAEKVPEVGETVSGLLVKKGFTYQIMAPEDLR 538

Query: 1620 VFSQLSTASITQRISVPYCGAFGVIKHRLKQIYESVVSLEEADVPTLVVHERVTIRQDSE 1799
            V++QLSTA+ITQRI+VPY G+F VIK+RLKQIYESV S  E DVP L VHERV IR DSE
Sbjct: 539  VYTQLSTANITQRIAVPYSGSFEVIKYRLKQIYESVESSTEEDVPVLTVHERVAIRLDSE 598

Query: 1800 NHVTLQWSSDPISDMVSDSVVAMILNISREGPKVTAVAXXXXXXXXXXXXAQKVVYALLV 1979
            ++VTLQWSSDPISDMVSDSVVAMILNI REGPKV  +             A+KVVY+L+V
Sbjct: 599  SYVTLQWSSDPISDMVSDSVVAMILNIGREGPKVVPIEEAVKTEEETEKVARKVVYSLMV 658

Query: 1980 SLFGDVKVGEEGKLVVTVDGDVAKVDGKNGEVECENEGLKQRVRTALRRIQSAVRPIPLS 2159
            SLFGDVKV EEGKLV+TVDGDVA +DG++G+VE EN GLK+R++TA RRIQ AVRPIPLS
Sbjct: 659  SLFGDVKVAEEGKLVITVDGDVAHLDGRSGDVESENAGLKERIKTAFRRIQGAVRPIPLS 718

Query: 2160 AS 2165
            AS
Sbjct: 719  AS 720


>ref|XP_003560694.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            3-I-like [Brachypodium distachyon]
          Length = 690

 Score = 1144 bits (2960), Expect = 0.0
 Identities = 566/691 (81%), Positives = 621/691 (89%), Gaps = 1/691 (0%)
 Frame = +3

Query: 96   SVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIHPAYSGM 275
            SV   G +   GG   RE D++VITPLGAG+EVGRSCVHMTFKG+TVLFDCGIHPAYSGM
Sbjct: 3    SVAPAGKRPASGG---REGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGM 59

Query: 276  AALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLLSDY 455
            AALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKA+Y+LLLSDY
Sbjct: 60   AALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDY 119

Query: 456  VKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIA 635
            VKVSKVSVEDML+DEQDI+RSMDKIEVIDFHQT+EVNGIRFWCYTAGHVLGAAMFMVDIA
Sbjct: 120  VKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIA 179

Query: 636  GVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTDVIHSTI 815
            GVR+LYTGDYSREEDRHL+AAEIPQFSPD+CI+ESTYGVQ HQPR VREKRFTD IH+T+
Sbjct: 180  GVRILYTGDYSREEDRHLKAAEIPQFSPDVCIVESTYGVQQHQPRHVREKRFTDAIHNTV 239

Query: 816  AQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINAMN 995
            +QGGRVLIPAFALGRAQELLLILDEYWSNHPEL  IPIYYASPLAK+CMAVYQTYIN+MN
Sbjct: 240  SQGGRVLIPAFALGRAQELLLILDEYWSNHPELQKIPIYYASPLAKKCMAVYQTYINSMN 299

Query: 996  ERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKWCSDKKN 1175
            ERIRNQFA SNPF FKHI PL SI+NF DVGPSVVMASP  LQSGLSRQLFDKWC+DKKN
Sbjct: 300  ERIRNQFAQSNPFHFKHIEPLNSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDKKN 359

Query: 1176 ACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSNFLKELM 1355
             CVIPGYV+EGTLAKTIINEP+EVTL NGLTAPL+MQ++YISFSAHADF QTS FL EL 
Sbjct: 360  TCVIPGYVIEGTLAKTIINEPREVTLANGLTAPLHMQIFYISFSAHADFPQTSGFLDELR 419

Query: 1356 PPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAIGRMAEK 1535
            PPNIILVHGEANEMGRLKQKLITQF   N KI+SPKNCQSVEMYFSSEKMAK IGR+AEK
Sbjct: 420  PPNIILVHGEANEMGRLKQKLITQFDGTNIKIVSPKNCQSVEMYFSSEKMAKTIGRLAEK 479

Query: 1536 TPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIKHRLKQI 1715
             P+ GE VSGLLVKKGFTYQIMAP+DL V++QLSTA++TQ+I+VPY G+F VIK+RLKQI
Sbjct: 480  VPDVGEPVSGLLVKKGFTYQIMAPEDLRVYTQLSTANVTQQIAVPYSGSFEVIKYRLKQI 539

Query: 1716 YESVVSL-EEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMILNISREG 1892
            YESV S  EE +VPTL+VHERVTIR +SE++VTLQWSSDPISDMVSDSVVAMILNI REG
Sbjct: 540  YESVESCPEEPEVPTLIVHERVTIRLESESYVTLQWSSDPISDMVSDSVVAMILNIGREG 599

Query: 1893 PKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKVDGKNGE 2072
            PKV  V             A+KVVYAL+VSLF DVKV EEGKLV++VDGDVA +DG +G+
Sbjct: 600  PKVVPVEEAEKTQDETEKVARKVVYALMVSLFADVKVAEEGKLVISVDGDVAHLDGSSGD 659

Query: 2073 VECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
            VECEN  LK+R++TA RRIQ AVRPIPLS+S
Sbjct: 660  VECENAALKERIKTAFRRIQGAVRPIPLSSS 690


>ref|NP_001146407.1| uncharacterized protein LOC100279987 [Zea mays]
            gi|219887045|gb|ACL53897.1| unknown [Zea mays]
            gi|414873991|tpg|DAA52548.1| TPA: hypothetical protein
            ZEAMMB73_264007 [Zea mays]
          Length = 697

 Score = 1143 bits (2957), Expect = 0.0
 Identities = 568/697 (81%), Positives = 622/697 (89%), Gaps = 3/697 (0%)
 Frame = +3

Query: 84   MASCSVGGTGVK--RREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIH 257
            MAS +   +G     +   +  RE D++V+TPLGAG+EVGRSCVHMTFKG+TVLFDCGIH
Sbjct: 1    MASSAAAPSGAPPAAKRPASSGREGDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIH 60

Query: 258  PAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYK 437
            PAYSGMAALPYFDEIDPS IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA+YK
Sbjct: 61   PAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYK 120

Query: 438  LLLSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAM 617
            LLLSDYVKVSKVSVEDMLYDE DI RSMDKIEVIDFHQT+EVNGIRFWCYTAGHVLGAAM
Sbjct: 121  LLLSDYVKVSKVSVEDMLYDESDIARSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAM 180

Query: 618  FMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTD 797
            FMVDIAGVR+LYTGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQ HQPR++REKRFT+
Sbjct: 181  FMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIIREKRFTE 240

Query: 798  VIHSTIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQT 977
            VIH+T++QGGRVLIPAFALGRAQELLLILDEYWS HPELH IPIYYASPLAKRCMAVYQT
Sbjct: 241  VIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQT 300

Query: 978  YINAMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKW 1157
            YIN+MNERIRNQFA SNPF FKHI  L SI+NF DVGPSVVMASP GLQSGLSRQLFDKW
Sbjct: 301  YINSMNERIRNQFAQSNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKW 360

Query: 1158 CSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSN 1337
            C+DKKNACVIPGYVVEGTLAKTIINEP+EVTL NGLTAPL+M V+YISFSAHADF QTSN
Sbjct: 361  CTDKKNACVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMSVHYISFSAHADFPQTSN 420

Query: 1338 FLKELMPPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAI 1517
            FL EL PPNIILVHGEANEM RLKQKLITQF   NTKI+SPKNCQSVEMYF+ EKMAK I
Sbjct: 421  FLDELRPPNIILVHGEANEMSRLKQKLITQFDGTNTKIVSPKNCQSVEMYFTCEKMAKTI 480

Query: 1518 GRMAEKTPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIK 1697
            GR+AE+ PE GE+ SGLLVKKGFTYQIMAP+DL VF+QLSTA+I QRI+VPY G+F VI+
Sbjct: 481  GRLAEQVPEGGESSSGLLVKKGFTYQIMAPEDLRVFTQLSTANIIQRIAVPYSGSFEVIR 540

Query: 1698 HRLKQIYESVVS-LEEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMIL 1874
            +RLKQIYESV S  EE+DVPTL+VHERVT+R DSE++VTLQWSSDPISDMVSDSVVAM+L
Sbjct: 541  YRLKQIYESVESATEESDVPTLIVHERVTVRLDSESYVTLQWSSDPISDMVSDSVVAMVL 600

Query: 1875 NISREGPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKV 2054
            NI REGPKV  V             A KVVYAL+ SLFGDVKV EEGK V++VDG+VA +
Sbjct: 601  NIGREGPKVVPVEEAVKTKEETEKAALKVVYALMTSLFGDVKVAEEGKFVISVDGNVAHL 660

Query: 2055 DGKNGEVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
            DG++G+VECEN  LK+R++TA RRIQ AVRPIPLSAS
Sbjct: 661  DGRSGDVECENATLKERIKTAFRRIQGAVRPIPLSAS 697


>ref|XP_002323823.2| hypothetical protein POPTR_0017s11240g [Populus trichocarpa]
            gi|566212712|ref|XP_002323825.2| hypothetical protein
            POPTR_0017s11240g [Populus trichocarpa]
            gi|550320032|gb|EEF03956.2| hypothetical protein
            POPTR_0017s11240g [Populus trichocarpa]
            gi|550320033|gb|EEF03958.2| hypothetical protein
            POPTR_0017s11240g [Populus trichocarpa]
          Length = 699

 Score = 1141 bits (2951), Expect = 0.0
 Identities = 561/683 (82%), Positives = 625/683 (91%), Gaps = 2/683 (0%)
 Frame = +3

Query: 114  VKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIHPAYSGMAALPYF 293
            +KRR+        D+L +TPLGAGNEVGRSCV+M+FKGKTVLFDCGIHPAYSGMAALPYF
Sbjct: 10   LKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHPAYSGMAALPYF 69

Query: 294  DEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLLSDYVKVSKV 473
            DEIDPSTIDVLL+THFHLDHAASLPYFLEKTTF+GRVFMTHATKA+YKLLL+DYVKVSKV
Sbjct: 70   DEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLLLTDYVKVSKV 129

Query: 474  SVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLY 653
            SVEDML+DE+DI RSMDKIEVIDFHQT++VNGI+FWCYTAGHVLGAAMFMVDIAGVRVLY
Sbjct: 130  SVEDMLFDEKDINRSMDKIEVIDFHQTLDVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 189

Query: 654  TGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTDVIHSTIAQGGRV 833
            TGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQLHQPR +REKRFTDVIHSTI+ GGRV
Sbjct: 190  TGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHLREKRFTDVIHSTISLGGRV 249

Query: 834  LIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINAMNERIRNQ 1013
            LIPAFALGRAQELLLILDEYW+NHPELHNIPIYYASPLAK+CM VYQTYI +MNERIRNQ
Sbjct: 250  LIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKKCMTVYQTYILSMNERIRNQ 309

Query: 1014 FANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKWCSDKKNACVIPG 1193
            FANSNPF FKHISPL SIE+F DVGPSVVMASP GLQSGLSRQLFD WCSDKKNACV+PG
Sbjct: 310  FANSNPFKFKHISPLNSIEDFSDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNACVLPG 369

Query: 1194 YVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSNFLKELMPPNIIL 1373
            YVVEGTLAKTIINEPKEV LMNGLTAPLNMQV+YISFSAHAD+AQTS FLKELMPPNIIL
Sbjct: 370  YVVEGTLAKTIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 429

Query: 1374 VHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAIGRMAEKTPEPGE 1553
            VHGEANEMGRLKQKLIT+FA+ NTKII+PKNCQSVEMYF+SEKMAK IG++AE+TP+ GE
Sbjct: 430  VHGEANEMGRLKQKLITEFADGNTKIITPKNCQSVEMYFNSEKMAKTIGKLAERTPDVGE 489

Query: 1554 TVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIKHRLKQIYESVVS 1733
            TVSG+LVKKGFTYQIMAP DLHVFSQLST +ITQRI++P+ GAFGVIKHRL+QIYESV S
Sbjct: 490  TVSGILVKKGFTYQIMAPGDLHVFSQLSTGNITQRITIPFSGAFGVIKHRLEQIYESVES 549

Query: 1734 --LEEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMILNISREGPKVTA 1907
               EE+  PTL VHE VT++Q+S+ H++L W++DPISDMVSDS+VA++LNISRE PKV  
Sbjct: 550  GTDEESGFPTLQVHELVTVKQESDRHISLHWTADPISDMVSDSIVALVLNISREVPKVIV 609

Query: 1908 VAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKVDGKNGEVECEN 2087
             +            A+KV+YALLVSLFGDVK+GE GKLV+ VDG+VA++D ++G+VE EN
Sbjct: 610  ESEDIKSEEENEKKAEKVIYALLVSLFGDVKLGENGKLVLRVDGNVAELDKQSGDVESEN 669

Query: 2088 EGLKQRVRTALRRIQSAVRPIPL 2156
            EGLK+RVRTA RRI+SAVRPIPL
Sbjct: 670  EGLKERVRTAFRRIRSAVRPIPL 692


>dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 693

 Score = 1137 bits (2941), Expect = 0.0
 Identities = 563/695 (81%), Positives = 617/695 (88%), Gaps = 1/695 (0%)
 Frame = +3

Query: 84   MASCSVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIHPA 263
            MAS +      KR   G   RE D +V+TPLGAG EVGRSCVHM+FKG+TVLFDCGIHPA
Sbjct: 1    MASVATAPPAGKRPASG--EREGDHMVVTPLGAGGEVGRSCVHMSFKGRTVLFDCGIHPA 58

Query: 264  YSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLL 443
            YSGMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKA+Y+LL
Sbjct: 59   YSGMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLL 118

Query: 444  LSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFM 623
            LSDYVKVSKVSVEDML+DEQD++RSMDKIEVIDFHQT+EVNGIRFWCYTAGHVLGAAMFM
Sbjct: 119  LSDYVKVSKVSVEDMLFDEQDVIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFM 178

Query: 624  VDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTDVI 803
            VDIAGVR+LYTGDYSREEDRHL+AAE+PQFSPDICIIESTYGVQ HQPR VREKRFTD I
Sbjct: 179  VDIAGVRILYTGDYSREEDRHLKAAEVPQFSPDICIIESTYGVQQHQPRHVREKRFTDAI 238

Query: 804  HSTIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYI 983
            H+T++QGGRVLIPA+ALGRAQELLLILDEYWSNHPELH IPIYYASPLAK+CMAVYQTYI
Sbjct: 239  HNTVSQGGRVLIPAYALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYI 298

Query: 984  NAMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKWCS 1163
            N+MNERIRNQFA SNPF FKHI PL SI+NF DVGPSVVMASP  LQSGLSRQLFDKWC+
Sbjct: 299  NSMNERIRNQFAQSNPFHFKHIEPLNSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCT 358

Query: 1164 DKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSNFL 1343
            DKKN CVIPG+ VEG+L KTIINEP+EVTL NGLTAPL+MQ++YISFSAHADF QTS FL
Sbjct: 359  DKKNTCVIPGFAVEGSLVKTIINEPREVTLANGLTAPLHMQIFYISFSAHADFLQTSGFL 418

Query: 1344 KELMPPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAIGR 1523
             EL PPNIILVHGEANEMGRLKQKL TQF   NTKI+SPKNCQSVEMYFSSEKMAK IGR
Sbjct: 419  DELRPPNIILVHGEANEMGRLKQKLTTQFDGTNTKIVSPKNCQSVEMYFSSEKMAKTIGR 478

Query: 1524 MAEKTPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIKHR 1703
            +AEK PE GE+VSGLLVKKGFTYQIMAP+DL V++QLST +ITQRISVPY G+F VIK+R
Sbjct: 479  LAEKVPEVGESVSGLLVKKGFTYQIMAPEDLRVYTQLSTTNITQRISVPYSGSFEVIKYR 538

Query: 1704 LKQIYESV-VSLEEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMILNI 1880
            LK+IYESV  S EE DVPTL+VH+RVTIR +SE HVTLQWSSD ISDMVSDSVVAMILNI
Sbjct: 539  LKRIYESVESSTEEPDVPTLIVHKRVTIRLESEIHVTLQWSSDYISDMVSDSVVAMILNI 598

Query: 1881 SREGPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKVDG 2060
             R+GPKV  +             AQKVVYAL+ SLFGDVKV EEG+LV++VDGDVA +DG
Sbjct: 599  GRQGPKVVPIEEAAKTEEETEKVAQKVVYALMASLFGDVKVAEEGELVISVDGDVAHLDG 658

Query: 2061 KNGEVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
            ++G+VECEN  LK+R+ TA RRIQ AVRPIPLSAS
Sbjct: 659  RSGDVECENAALKERISTAFRRIQGAVRPIPLSAS 693


>ref|XP_002323824.2| cleavage and polyadenylation specificity factor family protein
            [Populus trichocarpa] gi|550320034|gb|EEF03957.2|
            cleavage and polyadenylation specificity factor family
            protein [Populus trichocarpa]
          Length = 695

 Score = 1134 bits (2934), Expect = 0.0
 Identities = 557/686 (81%), Positives = 625/686 (91%), Gaps = 2/686 (0%)
 Frame = +3

Query: 114  VKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIHPAYSGMAALPYF 293
            +KRR+        D+L +TPLGAGNEVGRSCV+M+FKGKTVLFDCGIH AYSGMAALPYF
Sbjct: 10   LKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHLAYSGMAALPYF 69

Query: 294  DEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKLLLSDYVKVSKV 473
            DEIDPSTIDVLL+THFHLDHAASLPYFLEKTTF+GRVFMTHATKA+YKLLL+DYVKVSKV
Sbjct: 70   DEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLLLTDYVKVSKV 129

Query: 474  SVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLY 653
            SVEDML+DE+DI RSMDKIEVIDFHQT++VNGI+FWCYTAGHVLGAAMFMVDIAGVRVLY
Sbjct: 130  SVEDMLFDEKDINRSMDKIEVIDFHQTVDVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 189

Query: 654  TGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTDVIHSTIAQGGRV 833
            TGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQLHQPR +REKRFTDVIHSTI+ GGRV
Sbjct: 190  TGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIHSTISLGGRV 249

Query: 834  LIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINAMNERIRNQ 1013
            LIPAFALGRAQELLLILDEYWSNHPELHNIP+YYASPLAK+CM VYQTYI +MNERIRNQ
Sbjct: 250  LIPAFALGRAQELLLILDEYWSNHPELHNIPVYYASPLAKKCMTVYQTYILSMNERIRNQ 309

Query: 1014 FANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKWCSDKKNACVIPG 1193
            FA+SNPF FKHISPL SIE+F DVGPSVVMA+P GLQSGLSRQLFD WCSDKKNACVIPG
Sbjct: 310  FADSNPFKFKHISPLNSIEDFTDVGPSVVMATPGGLQSGLSRQLFDMWCSDKKNACVIPG 369

Query: 1194 YVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSNFLKELMPPNIIL 1373
            ++VEGTLAKTIINEPKEV LMNGLTAPLNMQV+YISFSAHAD+AQTS FLKELMPPNIIL
Sbjct: 370  FLVEGTLAKTIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 429

Query: 1374 VHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAIGRMAEKTPEPGE 1553
            VHGEANEMGRLKQKLIT+F + NTKII+PKNCQSVEMYF+SEKMAK  G++AE+TP+ GE
Sbjct: 430  VHGEANEMGRLKQKLITEFTDGNTKIITPKNCQSVEMYFNSEKMAKTTGKLAERTPDVGE 489

Query: 1554 TVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIKHRLKQIYESVVS 1733
            TVSG+LVKKGFTYQIMAP+DLHVFSQLST +ITQRI++P+ GAFGVIKHRL+QIYESV S
Sbjct: 490  TVSGILVKKGFTYQIMAPEDLHVFSQLSTGNITQRITIPFSGAFGVIKHRLEQIYESVES 549

Query: 1734 --LEEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMILNISREGPKVTA 1907
               EE+  PTL VHE VT++Q+S+ H++L W++DPISDMVSDS+VA++LNISRE PKV  
Sbjct: 550  GTDEESGSPTLQVHELVTVKQESDRHISLHWTADPISDMVSDSIVALVLNISREVPKVIV 609

Query: 1908 VAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKVDGKNGEVECEN 2087
             +            A+KV+YA LVSLFGDVK+GE GKLV++VDG+VA++D ++G+VE EN
Sbjct: 610  ESEDIKSEEENEKKAEKVIYAFLVSLFGDVKLGENGKLVISVDGNVAELDKQSGDVESEN 669

Query: 2088 EGLKQRVRTALRRIQSAVRPIPLSAS 2165
            EGLK+RVRTA RRIQSAVRPIPL AS
Sbjct: 670  EGLKERVRTAFRRIQSAVRPIPLPAS 695


>ref|XP_002463500.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
            gi|241917354|gb|EER90498.1| hypothetical protein
            SORBIDRAFT_01g000850 [Sorghum bicolor]
          Length = 695

 Score = 1133 bits (2930), Expect = 0.0
 Identities = 568/697 (81%), Positives = 619/697 (88%), Gaps = 3/697 (0%)
 Frame = +3

Query: 84   MASCSVGGTGVKR--REGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIH 257
            MAS +   +G     +   +  RE D++VITPLGAG+EVGRSCVHMTFKG+TVLFDCGIH
Sbjct: 1    MASSAAAPSGAPPAGKRPASSGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIH 60

Query: 258  PAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYK 437
            PAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA+Y+
Sbjct: 61   PAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYR 120

Query: 438  LLLSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAM 617
            LLLSDYVKVSKVSVEDMLYDE DI RSM+KIEVIDFHQT+EVNGIRFWCYTAGHVLGAAM
Sbjct: 121  LLLSDYVKVSKVSVEDMLYDENDIARSMEKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAM 180

Query: 618  FMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTD 797
            FMVDIAGVR+LYTGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQ HQPR+VREKRFT+
Sbjct: 181  FMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIVREKRFTE 240

Query: 798  VIHSTIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQT 977
            VIH+T++QGGRVLIPAFALGRAQELLLILDEYWS HPELH IPIYYASPLAKRCMAVYQT
Sbjct: 241  VIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQT 300

Query: 978  YINAMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKW 1157
            YIN+MNERIRNQFA SNPF FKHI  L SI+NF DVGPSVVMASP GLQSGLSRQLFDKW
Sbjct: 301  YINSMNERIRNQFAQSNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKW 360

Query: 1158 CSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSN 1337
            C+DKKNACVIPGYVVEGTLAKTIINEP+EVTL NGLTAPL+M V+YISFSAHADF QTSN
Sbjct: 361  CTDKKNACVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMSVHYISFSAHADFPQTSN 420

Query: 1338 FLKELMPPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAI 1517
            FL EL PPNIILVHGEANEM RLKQKL TQF    T I+SPKNCQSVEMYF+ EKMAK I
Sbjct: 421  FLDELRPPNIILVHGEANEMSRLKQKLKTQF--DGTNIVSPKNCQSVEMYFTCEKMAKTI 478

Query: 1518 GRMAEKTPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIK 1697
            GR+AEK PE GE+  GLLVKKGFTYQIMAP+DL VF+QLSTA+ITQRI+VPY G+F VIK
Sbjct: 479  GRLAEKVPEGGESSGGLLVKKGFTYQIMAPEDLRVFTQLSTANITQRIAVPYSGSFEVIK 538

Query: 1698 HRLKQIYESVVS-LEEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMIL 1874
            +RLKQIYESV S  EE+DVP L+VHERVT+R DSE++VTLQWSSDPISDMVSDSVVAMIL
Sbjct: 539  YRLKQIYESVESATEESDVPALIVHERVTVRLDSESYVTLQWSSDPISDMVSDSVVAMIL 598

Query: 1875 NISREGPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKV 2054
            NI REGPKV  V             AQKVVYAL+ SLFGDVKV  EGK V++VDG+VA +
Sbjct: 599  NIGREGPKVVPVEEAVKTKEETEKVAQKVVYALMTSLFGDVKVTAEGKFVISVDGNVAHL 658

Query: 2055 DGKNGEVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
            DG +G+V+CEN  LK+R++TA RRIQSAVRPIPLSAS
Sbjct: 659  DGMSGDVKCENATLKERIKTAFRRIQSAVRPIPLSAS 695


>ref|XP_004981011.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            3-I-like [Setaria italica]
          Length = 695

 Score = 1132 bits (2927), Expect = 0.0
 Identities = 563/696 (80%), Positives = 620/696 (89%), Gaps = 1/696 (0%)
 Frame = +3

Query: 81   SMASCSVGGTGVKRREGGAVSRESDRLVITPLGAGNEVGRSCVHMTFKGKTVLFDCGIHP 260
            S+A+ S    G +   GG   RE D++V+TPLGAG+EVGRSCVH+TFKG+TVLFDCGIHP
Sbjct: 3    SVAAPSASQAGKRPATGG---REGDQMVVTPLGAGSEVGRSCVHLTFKGRTVLFDCGIHP 59

Query: 261  AYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAVYKL 440
            AYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA+YKL
Sbjct: 60   AYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL 119

Query: 441  LLSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMF 620
            LL DYVKVSKVSVEDMLY+E DI RSM+KIEVIDFHQT+EVNGIRFWCYTAGHVLGAAMF
Sbjct: 120  LLMDYVKVSKVSVEDMLYNESDIGRSMEKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMF 179

Query: 621  MVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLVREKRFTDV 800
            MVDIAGVR+LYTGDYSREEDRHLRAAE+PQFSPDICIIESTYG+Q HQPR+VREKRFT+V
Sbjct: 180  MVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTYGIQQHQPRIVREKRFTEV 239

Query: 801  IHSTIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTY 980
            IH+T++QGGRVLIPAFALGRAQELLLILDEYWS HPELH IPIYYASPLAKRCM+VYQTY
Sbjct: 240  IHNTVSQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMSVYQTY 299

Query: 981  INAMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPSGLQSGLSRQLFDKWC 1160
            IN+MN+RIRNQFA SNPF FKHI  L SIENF DVGPSVVMASP GLQSGLSRQLFDKWC
Sbjct: 300  INSMNDRIRNQFAQSNPFIFKHIESLNSIENFHDVGPSVVMASPGGLQSGLSRQLFDKWC 359

Query: 1161 SDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSNF 1340
            +DKKNACVIPGYVVEGTLAKTIINEP+EVTL NGLTAPL+MQV+YISFSAHADF QTSNF
Sbjct: 360  TDKKNACVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQTSNF 419

Query: 1341 LKELMPPNIILVHGEANEMGRLKQKLITQFAEKNTKIISPKNCQSVEMYFSSEKMAKAIG 1520
            L EL PPNIILVHGEANEM RLKQKLI+QF   NTKI+SPKNCQSVEMYF+ EKMAK IG
Sbjct: 420  LDELRPPNIILVHGEANEMSRLKQKLISQFDGTNTKIVSPKNCQSVEMYFTCEKMAKTIG 479

Query: 1521 RMAEKTPEPGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRISVPYCGAFGVIKH 1700
            R+AE  P  GE+  GLLVKKGFTYQIMAP+DL VF+QLSTA+ITQRI+VPY G+F VIK+
Sbjct: 480  RLAENVPGGGESSGGLLVKKGFTYQIMAPEDLRVFTQLSTANITQRIAVPYSGSFEVIKY 539

Query: 1701 RLKQIYESVVS-LEEADVPTLVVHERVTIRQDSENHVTLQWSSDPISDMVSDSVVAMILN 1877
            RL QIYESV S  EE+DVP L+VHERVT+R DSE++VTLQWSSDPISDMVSDSVV+MILN
Sbjct: 540  RLNQIYESVESATEESDVPALIVHERVTVRLDSESYVTLQWSSDPISDMVSDSVVSMILN 599

Query: 1878 ISREGPKVTAVAXXXXXXXXXXXXAQKVVYALLVSLFGDVKVGEEGKLVVTVDGDVAKVD 2057
            I REGPKV  V             A KVVY+L+ SLFGDVKVG+EGK V++VDGDVA +D
Sbjct: 600  IGREGPKVVPVEEAAKTKEDTERVALKVVYSLMASLFGDVKVGDEGKFVISVDGDVAHLD 659

Query: 2058 GKNGEVECENEGLKQRVRTALRRIQSAVRPIPLSAS 2165
            G++G+VEC N  LK+R++TA RRIQ AVRPIPLSAS
Sbjct: 660  GRSGDVECVNGTLKERIKTAFRRIQGAVRPIPLSAS 695