BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00005249
         (573 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]                        91   2e-23
gb|ABF97537.1| retrotransposon protein, putative, Ty1-copia subc...    92   5e-23
gb|AAR87214.1| retrotransposon protein, putative, Ty1-copia sub-...    92   5e-23
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]      92   9e-23
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]          91   1e-22
gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]      91   2e-22
emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]         90   2e-22
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s...    90   3e-22
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ...    90   3e-22
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]      90   3e-22
gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subc...    90   3e-22
gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subc...    90   3e-22
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...    90   3e-22
emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group] gi...    90   3e-22
gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subc...    90   3e-22
gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subc...    90   3e-22
gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group...    90   3e-22
gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group...    90   3e-22
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap...    90   3e-22
gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japo...    90   3e-22

>gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
          Length = 1264

 Score = 91.3 bits (225), Expect(3) = 2e-23
 Identities = 58/144 (40%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFR-----LLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQVN-V 409
           KSN P   +  K  K +       CG   H AKDC  R           R+  KG VN V
Sbjct: 187 KSNKPNKTTNFKKKKNKAELTCFACGEAGHFAKDCPDRAD---------RRGKKGNVNTV 237

Query: 408 VEVGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGN 229
           +     D  + ++ F  SV   +Q   WWLD+GAN+HV SD + FS+Y+ +R  SV+MGN
Sbjct: 238 IASNEEDKGYGNLPFIFSV---FQSPSWWLDTGANVHVCSDINLFSSYQGARDSSVLMGN 294

Query: 228 GISANVLGEGRVDLKMTSEKTLTL 157
           G  A+V G G VDLK TS K + L
Sbjct: 295 GSHASVHGTGTVDLKFTSGKIVQL 318



 Score = 35.0 bits (79), Expect(3) = 2e-23
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLMLI 2
           KVVLESNK+V+++   FIGKG+   G     L+
Sbjct: 343 KVVLESNKLVVSKSGQFIGKGYDCGGLFRFSLL 375



 Score = 28.9 bits (63), Expect(3) = 2e-23
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P IH+NLVSG+LL + G
Sbjct: 324 VPSIHKNLVSGTLLCRDG 341


>gb|ABF97537.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1397

 Score = 92.4 bits (228), Expect(3) = 5e-23
 Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 303 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTFKSANVTI 353

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 354 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 411

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TSEK + L
Sbjct: 412 HASVHGVGTVDLKFTSEKIVQL 433



 Score = 35.4 bits (80), Expect(3) = 5e-23
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 458 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 489



 Score = 25.8 bits (55), Expect(3) = 5e-23
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 439 VPSIDRNLVSGSRLTRDG 456


>gb|AAR87214.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
          Length = 1393

 Score = 92.4 bits (228), Expect(3) = 5e-23
 Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 303 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTFKSANVTI 353

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 354 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 411

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TSEK + L
Sbjct: 412 HASVHGVGTVDLKFTSEKIVQL 433



 Score = 35.4 bits (80), Expect(3) = 5e-23
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 458 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 489



 Score = 25.8 bits (55), Expect(3) = 5e-23
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 439 VPSIDRNLVSGSRLTRDG 456


>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score = 91.7 bits (226), Expect(3) = 9e-23
 Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C         S++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------SQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 9e-23
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 9e-23
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
          Length = 1319

 Score = 90.9 bits (224), Expect(3) = 1e-22
 Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       PSV    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPSVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 1e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 1e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1861

 Score = 90.5 bits (223), Expect(3) = 2e-22
 Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570  KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
            K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 640  KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 690

Query: 402  VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
                D S       P+V    Q ++WW+D+GANIHV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 691  GNTGDGS--GYGNLPTVFSVNQSTNWWIDTGANIHVCADISLFSSYQVARGSTVLMGNGS 748

Query: 222  SANVLGEGRVDLKMTSEKTLTL 157
             A+V G G VDLK TS K + L
Sbjct: 749  HASVHGVGTVDLKFTSGKIVQL 770



 Score = 35.4 bits (80), Expect(3) = 2e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 795 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 826



 Score = 25.8 bits (55), Expect(3) = 2e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 776 VPSIDRNLVSGSRLTRDG 793


>emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]
          Length = 1314

 Score = 90.1 bits (222), Expect(3) = 2e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 198 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 248

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 249 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVYADISLFSSYQVARGSTVLMGNGS 306

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 307 HASVHGVGTVDLKFTSGKIVQL 328



 Score = 35.4 bits (80), Expect(3) = 2e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 353 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 384



 Score = 25.8 bits (55), Expect(3) = 2e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 334 VPSIDRNLVSGSRLTRDG 351


>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
           Group]
          Length = 1911

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
          Length = 1460

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1391

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 315 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 365

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 366 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 423

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 424 HASVHGVGTVDLKFTSGKIVQL 445



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 470 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 501



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 451 VPSIDRNLVSGSRLTRDG 468


>gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1320

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1320

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
          Length = 1320

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group]
           gi|38345937|emb|CAD41412.2| OSJNBb0078D11.12 [Oryza
           sativa Japonica Group]
          Length = 1320

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1320

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1320

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|51854387|gb|AAU10767.1| hypothetical protein [Oryza
           sativa Japonica Group]
          Length = 1320

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|53749238|gb|AAU90098.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1320

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379


>gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score = 89.7 bits (221), Expect(3) = 3e-22
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
 Frame = -1

Query: 570 KSNTPKSDSGDKDGKFRLLCGRENHLAKDCFYRKQQKLVSRKKGRKRPKGQV----NVVE 403
           K     +++ ++D +   +CG+  HLA+ C          ++KG K P GQ     NV  
Sbjct: 226 KKQKKNNNNPNQDERTCFVCGQVGHLARKC---------PQRKGMKAPAGQTSKSANVTI 276

Query: 402 VGPSDSSFMSVSFTPSVNLTYQHSDWWLDSGANIHVRSDRSWFSTYEDSRGGSVIMGNGI 223
               D S       P+V    Q ++WW+D+GAN+HV +D S FS+Y+ +RG +V+MGNG 
Sbjct: 277 GNTGDGS--GYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGS 334

Query: 222 SANVLGEGRVDLKMTSEKTLTL 157
            A+V G G VDLK TS K + L
Sbjct: 335 HASVHGVGTVDLKFTSGKIVQL 356



 Score = 35.4 bits (80), Expect(3) = 3e-22
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 100 KVVLESNKVVITRENFFIGKGFVSEGFLSLML 5
           K+V ESNKVV+++  +FIGKG+   G     L
Sbjct: 381 KLVFESNKVVVSKHGYFIGKGYECGGLFRFSL 412



 Score = 25.8 bits (55), Expect(3) = 3e-22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 IPDIHRNLVSGSLLVQSG 102
           +P I RNLVSGS L + G
Sbjct: 362 VPSIDRNLVSGSRLTRDG 379