BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00005070
         (2601 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synt...   815   0.0  
gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus no...   815   0.0  
ref|XP_004961565.1| PREDICTED: multisubstrate pseudouridine synt...   815   0.0  
emb|CBI34194.3| unnamed protein product [Vitis vinifera]              807   0.0  
ref|XP_004961564.1| PREDICTED: multisubstrate pseudouridine synt...   803   0.0  
ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synt...   803   0.0  
gb|EOY11114.1| Pseudouridine synthase family protein isoform 2 [...   802   0.0  
ref|NP_001146470.1| hypothetical protein [Zea mays] gi|219887425...   801   0.0  
ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C...   800   0.0  
dbj|BAJ90067.1| predicted protein [Hordeum vulgare subsp. vulgare]    785   0.0  
ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ric...   784   0.0  
ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citr...   783   0.0  
ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Popu...   783   0.0  
gb|EOY11113.1| Pseudouridine synthase family protein, putative i...   782   0.0  
ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synt...   782   0.0  
gb|EMJ09385.1| hypothetical protein PRUPE_ppa020985mg [Prunus pe...   776   0.0  
ref|XP_003568149.1| PREDICTED: pseudouridylate synthase 7 homolo...   776   0.0  
ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synt...   774   0.0  
ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synt...   773   0.0  
ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synt...   772   0.0  

>ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
            vinifera]
          Length = 694

 Score =  815 bits (2105), Expect = 0.0
 Identities = 434/697 (62%), Positives = 516/697 (74%), Gaps = 18/697 (2%)
 Frame = +3

Query: 51   KPLDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXX 230
            K L+E+DVGI+ Y+S LPGFRG+LKQRY DFIVNEV  DGNVVHLTSLD           
Sbjct: 2    KHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLD-APPESMEKNE 60

Query: 231  XXXXXXADRNYTEEIELFRLLAGDADTELLRGFLD------KNDAPPIVLSPDPDKSHRA 392
                  +++ Y  EIELFR L GD+D E L+G +D      ++   PIVLS   DKSHR 
Sbjct: 61   TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRT 120

Query: 393  EVHNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQ 572
             VHNFFK+N KFLVTDTI+GPD  SK IRVR  S                          
Sbjct: 121  AVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNS------GGSHNNGRNSRKRKDRRDKP 174

Query: 573  YDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSISTQ 752
            +DSRGSDNW EH+GKFL FHLYKENKDTQEA+G+IGKMLG Q RSFGFAGTKDKRS+STQ
Sbjct: 175  FDSRGSDNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQ 234

Query: 753  KVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDIIK 932
            +VT+FKQ A RLAALN RL GIK+G+FC+V+EGLVLGQLLGNRFTITLRGVVADSE+ IK
Sbjct: 235  RVTVFKQHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIK 294

Query: 933  AAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVISEA 1112
            A+A+ LGR GFINY+GLQRFGSGSVPTHLIG ALLRGEW+TAV LILDPREGER  I +A
Sbjct: 295  ASADALGRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGERDAIRKA 354

Query: 1113 RLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQSY 1292
            R +YK + D++  L+QFPRHLVAERAILQCLKK PGNYLQ+LKAIPRTLRMMYVHSYQSY
Sbjct: 355  REYYKESDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSY 414

Query: 1293 LWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGD-INDSCEDNNLSELS 1469
            LWNHAASMRVQ +G  QVV+GDLVY K    EK+     ++ + D  +D+ + ++  E+S
Sbjct: 415  LWNHAASMRVQNYGTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDGCSDAFDSSHFDEIS 474

Query: 1470 DASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDGIN 1649
            +  LPEE+   VKA+++EDLLTGNYT +DVVLPLPGSR  YP NDIA  YH+ AKKD I+
Sbjct: 475  ETDLPEERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKKDAIS 534

Query: 1650 LRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKPAET 1829
            L ESAH  KEFSI +MTGG+RR+FQ+P D+ WELLTYT+GN+PLAETD D I++ KP+  
Sbjct: 535  LTESAHSVKEFSITNMTGGFRRVFQKPIDFEWELLTYTEGNIPLAETDWDKITKSKPSNI 594

Query: 1830 --KDKSINGNSGGH----VEISES-EITLDKNIISEDGSGSTS----QVEPVCSADTLAP 1976
               + S NGN   +    ++ SES E  ++ +  + + +G T     QVEP   +     
Sbjct: 595  IGGEDSRNGNEKENSFQCMKQSESFEHNVNLSTDNNEPNGVTEIGLPQVEPQFESGAPEA 654

Query: 1977 KMALKIGFTLPASCYATMAIRELLKTSTSVAYQKTLN 2087
            + ALK+ FTLPASCYATMAIRELLKTSTSVA+QKTLN
Sbjct: 655  QRALKLSFTLPASCYATMAIRELLKTSTSVAFQKTLN 691


>gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus notabilis]
          Length = 784

 Score =  815 bits (2104), Expect = 0.0
 Identities = 428/685 (62%), Positives = 502/685 (73%), Gaps = 13/685 (1%)
 Frame = +3

Query: 51   KPLDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXX 230
            K LDE+DVGI CY+S+LPGFRG+LKQRYSDFIVNEV  DGNVVHLTSLD           
Sbjct: 61   KTLDESDVGIFCYISNLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPETREETRT 120

Query: 231  XXXXXXADRNYTEEIELFRLLAGDADTELLRGFLDK------NDAPPIVLSPDPDKSHRA 392
                    ++YT EIE FR LAGD+D E L   +++       +  PIVLSP  DKSHR 
Sbjct: 121  ETIDAGT-KSYTSEIESFRCLAGDSDAESLEALINQINSGGGEEVSPIVLSPSSDKSHRT 179

Query: 393  EVHNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQ 572
            E+HNFFKKNFKFLVTDT++GPD  SK IRVR  S                          
Sbjct: 180  EIHNFFKKNFKFLVTDTVDGPDASSKCIRVRLNS------GRHNNHGRNSKKRKERGDKP 233

Query: 573  YDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSISTQ 752
            +D RGSD+WPEH+GKFL FHLYKENKD+QEALG+IGKMLG Q RSFGFAGTKDKRS+STQ
Sbjct: 234  FDRRGSDDWPEHVGKFLRFHLYKENKDSQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQ 293

Query: 753  KVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDIIK 932
            +VT+FKQRA RLAALN RL GI++G+FCYVKE LVLGQL GNRFT+TLRGVVADSE+ IK
Sbjct: 294  RVTVFKQRASRLAALNDRLIGIQVGDFCYVKEELVLGQLSGNRFTVTLRGVVADSEETIK 353

Query: 933  AAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGE--RAVIS 1106
            A+A  LGR GFINY+GLQRFGSGSVPT+LIG  L RGEWK AV +ILDPREG+    VI+
Sbjct: 354  ASASALGRRGFINYFGLQRFGSGSVPTYLIGAMLFRGEWKDAVHMILDPREGDILLDVIT 413

Query: 1107 EARLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQ 1286
            +AR +YK T D+D  L+Q PRHLVAE AILQCLKKCPGNYLQ+LKAIPRTLRMMYVHSYQ
Sbjct: 414  KAREYYKETNDIDGTLRQLPRHLVAENAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 473

Query: 1287 SYLWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDV-EGDINDSCEDNNLSE 1463
            SYLWNHAAS RVQK+G DQVV+GDLV+ KE   EK+ G    D  + D N     +++ E
Sbjct: 474  SYLWNHAASTRVQKYGTDQVVVGDLVFCKEHNIEKVKGTASADCKDEDSNAIFGSHDIDE 533

Query: 1464 LSDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDG 1643
            +S A LPEE+ + VK + +ED+L GN+  +DVVLPLPGSR+  P NDIA  YH++AKKD 
Sbjct: 534  VSGAELPEERNNPVKVVAAEDILAGNFAIDDVVLPLPGSRVILPTNDIAQVYHDLAKKDA 593

Query: 1644 INLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKPA 1823
            I+L ESAH  KEFSI SMTG YRR+FQ+P DY WELLTYT+G +PLAETDLDII++ KPA
Sbjct: 594  ISLTESAHNVKEFSITSMTGSYRRVFQKPVDYEWELLTYTNGTIPLAETDLDIIAKSKPA 653

Query: 1824 E-TKDKSINGN--SGGHVEISESEITLDKNIISEDGSGSTS-QVEPVCSADTLAPKMALK 1991
               ++  +NGN  S    +  E+E  L  +    DG      Q E  C  ++  P+MALK
Sbjct: 654  HVAEENEVNGNEESTKRSKRVENEAVLQTDDNKVDGEREAELQAESTCGTNSQEPQMALK 713

Query: 1992 IGFTLPASCYATMAIRELLKTSTSV 2066
            + FTLPASCYATMAIRELLKTSTSV
Sbjct: 714  LSFTLPASCYATMAIRELLKTSTSV 738


>ref|XP_004961565.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X2
            [Setaria italica]
          Length = 685

 Score =  815 bits (2104), Expect = 0.0
 Identities = 419/689 (60%), Positives = 502/689 (72%), Gaps = 12/689 (1%)
 Frame = +3

Query: 57   LDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXXXX 236
            L E + GI+C+ SSLPGFRGVLK RYSDFIV+EV  DG VV LTS D             
Sbjct: 7    LSEVEAGISCFASSLPGFRGVLKHRYSDFIVHEVARDGTVVQLTSFDLPSECVDVKEEEK 66

Query: 237  XXXXADRNYTEEIELFRLLAGDADTELLRGFLDK------NDAPPIVLSPDPDKSHRAEV 398
                AD ++++ +E FR L GDAD + LRG L++       D  P++LSPD DK+HR+EV
Sbjct: 67   AAPSADADHSQALESFRALCGDADCDALRGLLERVAAGGDGDVSPVILSPDADKAHRSEV 126

Query: 399  HNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQ-- 572
            HNFFKKNFKFLVTDT+E  DG  + IRVR  S                       G    
Sbjct: 127  HNFFKKNFKFLVTDTVEHSDGIQRCIRVRLGSGAGGGRGCGGGGRGKGRKRKNMGGSDWR 186

Query: 573  ----YDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRS 740
                +DSRGS NW + +GKFL FHLYKENKDTQEALG+IGKMLG Q RSFGFAGTKDKR+
Sbjct: 187  DDRPFDSRGSSNWSDSVGKFLRFHLYKENKDTQEALGIIGKMLGLQPRSFGFAGTKDKRA 246

Query: 741  ISTQKVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSE 920
            ++ Q+VT+FK +A RLAALN+RLFGIK+GNFCYVKEGLVLGQL+GN+FTITLRGV+A+SE
Sbjct: 247  VTLQQVTVFKVQANRLAALNNRLFGIKVGNFCYVKEGLVLGQLMGNQFTITLRGVIAESE 306

Query: 921  DIIKAAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAV 1100
            D+IKAAA+ LG+NGFINYYGLQRFGSGS+PTHL+G ALLRGEWK AV LILDPREGER  
Sbjct: 307  DVIKAAADGLGKNGFINYYGLQRFGSGSIPTHLVGAALLRGEWKAAVNLILDPREGERDD 366

Query: 1101 ISEARLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHS 1280
            I+E R HYK  GD+D AL+ FPRHLVAERAILQCLKKCPGNYLQ+LK IPRTLRMMYVHS
Sbjct: 367  INEVRKHYKEHGDIDKALRNFPRHLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHS 426

Query: 1281 YQSYLWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGDINDSCEDNNLS 1460
            YQSYLWNHAASMRV+K+G+ QVV GDLVY+KE P E+    +  + +    +S E +  S
Sbjct: 427  YQSYLWNHAASMRVEKYGMSQVVEGDLVYNKESPPEESTSVDIAETDDGHTNSSEIDLCS 486

Query: 1461 ELSDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKD 1640
            E    + PEE +  VK ++S DLL G YTF+DVVLPLPGS+  +P N++A+ YHEMAKKD
Sbjct: 487  E----AQPEETIQSVKIVDSGDLLKGMYTFDDVVLPLPGSQAMFPGNEVAEIYHEMAKKD 542

Query: 1641 GINLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKP 1820
            GI+L E+AHG KEFSI SM GGYRR+FQRP D+ WEL+TYTD +  LAETDLD++S  KP
Sbjct: 543  GISLMENAHGVKEFSITSMKGGYRRVFQRPIDFQWELMTYTDDSSSLAETDLDVLSRIKP 602

Query: 1821 AETKDKSINGNSGGHVEISESEITLDKNIISEDGSGSTSQVEPVCSADTLAPKMALKIGF 2000
             E        N     + S+ ++  D +  +      + + +P  S DT   KMA+K+ F
Sbjct: 603  KE-------ANELVTTDQSQDKLEKDSDTSTPTNGSDSLENKPTGSPDTAPRKMAIKLVF 655

Query: 2001 TLPASCYATMAIRELLKTSTSVAYQKTLN 2087
            TLPASCYATMAIRELLKTSTSVAYQKTL+
Sbjct: 656  TLPASCYATMAIRELLKTSTSVAYQKTLS 684


>emb|CBI34194.3| unnamed protein product [Vitis vinifera]
          Length = 693

 Score =  807 bits (2084), Expect = 0.0
 Identities = 431/697 (61%), Positives = 516/697 (74%), Gaps = 18/697 (2%)
 Frame = +3

Query: 51   KPLDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXX 230
            K L+E+DVGI+ Y+S LPGFRG+LKQRY DFIVNEV  DGNVVHLTSLD           
Sbjct: 2    KHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLD-APPESMEKNE 60

Query: 231  XXXXXXADRNYTEEIELFRLLAGDADTELLRGFLD------KNDAPPIVLSPDPDKSHRA 392
                  +++ Y  EIELFR L GD+D E L+G +D      ++   PIVLS   DKSHR 
Sbjct: 61   TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRT 120

Query: 393  EVHNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQ 572
             VHNFFK+N KFLVTDTI+GPD  SK IRVR  S                          
Sbjct: 121  AVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNS------GGSHNNGRNSRKRKDRRDKP 174

Query: 573  YDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSISTQ 752
            +DSRGSDNW EH+GKFL FHLYKENKDTQEA+G+IGKMLG Q RSFGFAGTKDKRS+STQ
Sbjct: 175  FDSRGSDNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQ 234

Query: 753  KVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDIIK 932
            +VT+FKQ A RLAALN RL GIK+G+FC+V+EGLVLGQLLGNRFTITLRGVVADSE+ IK
Sbjct: 235  RVTVFKQHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIK 294

Query: 933  AAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVISEA 1112
            A+A+ LGR GFINY+GLQRFGSGSVPTHLIG ALLRGEW+TAV LILDPREG+  ++ +A
Sbjct: 295  ASADALGRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGD-ILLLKA 353

Query: 1113 RLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQSY 1292
            R +YK + D++  L+QFPRHLVAERAILQCLKK PGNYLQ+LKAIPRTLRMMYVHSYQSY
Sbjct: 354  REYYKESDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSY 413

Query: 1293 LWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGD-INDSCEDNNLSELS 1469
            LWNHAASMRVQ +G  QVV+GDLVY K    EK+     ++ + D  +D+ + ++  E+S
Sbjct: 414  LWNHAASMRVQNYGTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDGCSDAFDSSHFDEIS 473

Query: 1470 DASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDGIN 1649
            +  LPEE+   VKA+++EDLLTGNYT +DVVLPLPGSR  YP NDIA  YH+ AKKD I+
Sbjct: 474  ETDLPEERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKKDAIS 533

Query: 1650 LRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKPAET 1829
            L ESAH  KEFSI +MTGG+RR+FQ+P D+ WELLTYT+GN+PLAETD D I++ KP+  
Sbjct: 534  LTESAHSVKEFSITNMTGGFRRVFQKPIDFEWELLTYTEGNIPLAETDWDKITKSKPSNI 593

Query: 1830 --KDKSINGNSGGH----VEISES-EITLDKNIISEDGSGSTS----QVEPVCSADTLAP 1976
               + S NGN   +    ++ SES E  ++ +  + + +G T     QVEP   +     
Sbjct: 594  IGGEDSRNGNEKENSFQCMKQSESFEHNVNLSTDNNEPNGVTEIGLPQVEPQFESGAPEA 653

Query: 1977 KMALKIGFTLPASCYATMAIRELLKTSTSVAYQKTLN 2087
            + ALK+ FTLPASCYATMAIRELLKTSTSVA+QKTLN
Sbjct: 654  QRALKLSFTLPASCYATMAIRELLKTSTSVAFQKTLN 690


>ref|XP_004961564.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Setaria italica]
          Length = 686

 Score =  803 bits (2074), Expect = 0.0
 Identities = 414/687 (60%), Positives = 496/687 (72%), Gaps = 12/687 (1%)
 Frame = +3

Query: 57   LDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXXXX 236
            L E + GI+C+ SSLPGFRGVLK RYSDFIV+EV  DG VV LTS D             
Sbjct: 7    LSEVEAGISCFASSLPGFRGVLKHRYSDFIVHEVARDGTVVQLTSFDLPSECVDVKEEEK 66

Query: 237  XXXXADRNYTEEIELFRLLAGDADTELLRGFLDK------NDAPPIVLSPDPDKSHRAEV 398
                AD ++++ +E FR L GDAD + LRG L++       D  P++LSPD DK+HR+EV
Sbjct: 67   AAPSADADHSQALESFRALCGDADCDALRGLLERVAAGGDGDVSPVILSPDADKAHRSEV 126

Query: 399  HNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQ-- 572
            HNFFKKNFKFLVTDT+E  DG  + IRVR  S                       G    
Sbjct: 127  HNFFKKNFKFLVTDTVEHSDGIQRCIRVRLGSGAGGGRGCGGGGRGKGRKRKNMGGSDWR 186

Query: 573  ----YDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRS 740
                +DSRGS NW + +GKFL FHLYKENKDTQEALG+IGKMLG Q RSFGFAGTKDKR+
Sbjct: 187  DDRPFDSRGSSNWSDSVGKFLRFHLYKENKDTQEALGIIGKMLGLQPRSFGFAGTKDKRA 246

Query: 741  ISTQKVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSE 920
            ++ Q+VT+FK +A RLAALN+RLFGIK+GNFCYVKEGLVLGQL+GN+FTITLRGV+A+SE
Sbjct: 247  VTLQQVTVFKVQANRLAALNNRLFGIKVGNFCYVKEGLVLGQLMGNQFTITLRGVIAESE 306

Query: 921  DIIKAAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAV 1100
            D+IKAAA+ LG+NGFINYYGLQRFGSGS+PTHL+G ALLRGEWK AV LILDPREGER  
Sbjct: 307  DVIKAAADGLGKNGFINYYGLQRFGSGSIPTHLVGAALLRGEWKAAVNLILDPREGERDD 366

Query: 1101 ISEARLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHS 1280
            I+E R HYK  GD+D AL+ FPRHLVAERAILQCLKKCPGNYLQ+LK IPRTLRMMYVHS
Sbjct: 367  INEVRKHYKEHGDIDKALRNFPRHLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHS 426

Query: 1281 YQSYLWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGDINDSCEDNNLS 1460
            YQSYLWNHAASMRV+K+G+ QVV GDLVY+KE P E+    +  + +    +S E +  S
Sbjct: 427  YQSYLWNHAASMRVEKYGMSQVVEGDLVYNKESPPEESTSVDIAETDDGHTNSSEIDLCS 486

Query: 1461 ELSDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKD 1640
            E    + PEE +  VK ++S DLL G YTF+DVVLPLPGS+  +P N++A+ YHEMAKKD
Sbjct: 487  E----AQPEETIQSVKIVDSGDLLKGMYTFDDVVLPLPGSQAMFPGNEVAEIYHEMAKKD 542

Query: 1641 GINLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKP 1820
            GI+L E+AHG KEFSI SM GGYRR+FQRP D+ WEL+TYTD +  LAETDLD++S  KP
Sbjct: 543  GISLMENAHGVKEFSITSMKGGYRRVFQRPIDFQWELMTYTDDSSSLAETDLDVLSRIKP 602

Query: 1821 AETKDKSINGNSGGHVEISESEITLDKNIISEDGSGSTSQVEPVCSADTLAPKMALKIGF 2000
             E        N     + S+ ++  D +  +      + + +P  S DT   KMA+K+ F
Sbjct: 603  KE-------ANELVTTDQSQDKLEKDSDTSTPTNGSDSLENKPTGSPDTAPRKMAIKLVF 655

Query: 2001 TLPASCYATMAIRELLKTSTSVAYQKT 2081
            TLPASCYATMAIRELLKTSTSV    T
Sbjct: 656  TLPASCYATMAIRELLKTSTSVVAMLT 682


>ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Citrus sinensis]
          Length = 739

 Score =  803 bits (2073), Expect = 0.0
 Identities = 420/700 (60%), Positives = 510/700 (72%), Gaps = 21/700 (3%)
 Frame = +3

Query: 51   KPLDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXX 230
            K +DE+D GI C++S+LPGFRG+LKQRY DFIVNEV  D  VVHLTSLD           
Sbjct: 46   KTVDESDAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVEHN 105

Query: 231  XXXXXXA-DRNYTEEIELFRLLAGDADTELLRGFLDK-------NDAPPIVLSPDPDKSH 386
                    +R+Y  EIE FR LAGD+D + L   +++       +  PPIVLS + DKSH
Sbjct: 106  ETKASDQLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDKSH 165

Query: 387  RAEVHNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDG 566
            R  +HNFFK NFKFLVTDT++GPD  SK IRVR  S                        
Sbjct: 166  RTAIHNFFKDNFKFLVTDTVDGPDASSKCIRVRLNS-----GGNNNSMGRNSKKRKERGD 220

Query: 567  GQYDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSIS 746
              +DSRGS+NWPE LGKFL FHLYKENKDTQEALG+I KMLG   RSFGFAGTKDKRS+S
Sbjct: 221  NPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVS 280

Query: 747  TQKVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDI 926
            TQ+VT+FKQRA +LAALN RL GI+LG+FCYVKEGL+LGQLLGNRFTITLRGVV DSED+
Sbjct: 281  TQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 340

Query: 927  IKAAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVIS 1106
            IKA+A  LGRNGFINY+GLQRFGSGSVPTHL+G  LLRGEWK+AV +ILDPREGER  IS
Sbjct: 341  IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 400

Query: 1107 EARLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQ 1286
            +AR +YK T D+D  L++ PRHLVAERAILQCLKKCPGNYLQ+LKAIPRTLRMMYVHSYQ
Sbjct: 401  KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 460

Query: 1287 SYLWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGD-INDSCEDNNLSE 1463
            S+LWNHAAS RVQKHG + VV+GDLV+ K    EK  G    + E +  ND+ + ++L E
Sbjct: 461  SFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDE 520

Query: 1464 LSDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDG 1643
            + +   P+ + + VK + +ED+ +G YT +DVVLPLPGSR+ YP ND+A+ YH +A+KDG
Sbjct: 521  VPETDHPDGRHNLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDG 580

Query: 1644 INLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKPA 1823
            INL ES H  KEFSI SMTG YRR+FQ+P D+ WELLTY DGN PLAETDLD I++ K A
Sbjct: 581  INLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKDKLA 640

Query: 1824 E--TKDKSINGNS----GGHVEISESEITLDKNIISEDGSGSTSQ------VEPVCSADT 1967
                +++++ GN        ++ SES ++ D  + +E+   + ++      VE VC AD+
Sbjct: 641  NIVKEEEAVCGNKKKDPSDCMKQSES-LSKDIKLSTENNEAACAKEVKQPHVESVCGADS 699

Query: 1968 LAPKMALKIGFTLPASCYATMAIRELLKTSTSVAYQKTLN 2087
               +MALK+G TLP+SCYATMAIRELLKTSTSVA+ KTLN
Sbjct: 700  QGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 739


>gb|EOY11114.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
          Length = 732

 Score =  802 bits (2072), Expect = 0.0
 Identities = 415/694 (59%), Positives = 499/694 (71%), Gaps = 17/694 (2%)
 Frame = +3

Query: 57   LDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXXXX 236
            + E+DVGI C++S LPGFRG+LKQRYSDFIVNEV  +GNVVHLTSLD             
Sbjct: 46   ITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPPEAVQEGETKT 105

Query: 237  XXXXADRNYTEEIELFRLLAGDADTELLRGFLDK------NDAPPIVLSPDPDKSHRAEV 398
                 ++ Y  EI  FR LAGD D + L  F+++       D  PIVLSPD DKSHR  +
Sbjct: 106  PDQL-NKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICPIVLSPDSDKSHRTAM 164

Query: 399  HNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQYD 578
            HNFFK+N +FLVTDT++GPD  SK IRVR  S                          YD
Sbjct: 165  HNFFKENLRFLVTDTVDGPDSSSKCIRVRLNS-------GNNNKGRNSKKRKERGDKPYD 217

Query: 579  SRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSISTQKV 758
            SRGS +WPEHLGKFL FHLYKENKDTQEALG+IGKMLG Q RSFGFAGTKDKRS+STQ+V
Sbjct: 218  SRGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQRV 277

Query: 759  TIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDIIKAA 938
            T+FKQ A RLAALN RL GIK+G+FCYVK+  +LGQLLGNRFTI LRG+VADSE+ IKA+
Sbjct: 278  TVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRGIVADSEETIKAS 337

Query: 939  AECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVISEARL 1118
             E LGR+GFINY+GLQRFGSGS+PTH IG  LLRGEW+ A   ILDPREGER  +S+AR 
Sbjct: 338  VESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPREGERDFVSKARE 397

Query: 1119 HYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQSYLW 1298
            +YK TGD++  L+Q PRHLVAERA+LQCLKKCPGNYLQ+LKAIPRTLRMMYVHSYQSYLW
Sbjct: 398  YYKETGDIEGTLRQLPRHLVAERAMLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLW 457

Query: 1299 NHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGDINDSCEDNNLSELSDAS 1478
            NHAASMRV+K+G ++VV+GDLVY K    EK+        + +  D+ + + L E+S   
Sbjct: 458  NHAASMRVEKYGSNEVVLGDLVYCKGNDAEKVKVVPSEHEDNNFEDAYDCSQLDEISGTD 517

Query: 1479 LPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDGINLRE 1658
            LPE K + VKAI + D+ TGNYT EDVVLP+PGSRI YP NDIA+ YH+MAKKDGI+L E
Sbjct: 518  LPEGKNNLVKAITAADISTGNYTIEDVVLPMPGSRIIYPVNDIANVYHDMAKKDGISLTE 577

Query: 1659 SAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKPAE--TK 1832
            S H  KEFSI SMTG YRR+FQ+P D+ WELL+YTDG++ L+ETDLD I++ KP     +
Sbjct: 578  SVHNIKEFSITSMTGSYRRVFQKPIDFEWELLSYTDGSIALSETDLDKIAKTKPVNLVKE 637

Query: 1833 DKSINGNSG-------GHVEISESEITLDKNIISEDGS--GSTSQVEPVCSADTLAPKMA 1985
            +K  +G  G        H+E  E +       +  +GS      Q+  +  +++L  + A
Sbjct: 638  EKPTDGTEGQDSSDHMEHIESFEDDKKFSTGNVEVEGSREAEPPQIHSLPESNSLGTQKA 697

Query: 1986 LKIGFTLPASCYATMAIRELLKTSTSVAYQKTLN 2087
            LK+ FTLPASCYATMAIRELLKTSTSVA+ KTLN
Sbjct: 698  LKLAFTLPASCYATMAIRELLKTSTSVAFHKTLN 731


>ref|NP_001146470.1| hypothetical protein [Zea mays] gi|219887425|gb|ACL54087.1| unknown
            [Zea mays] gi|413949796|gb|AFW82445.1| hypothetical
            protein ZEAMMB73_396305 [Zea mays]
          Length = 682

 Score =  801 bits (2069), Expect = 0.0
 Identities = 418/688 (60%), Positives = 497/688 (72%), Gaps = 11/688 (1%)
 Frame = +3

Query: 57   LDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXXXX 236
            L E + GI+C+ SSLPGFRGVLK RY+DFIV+EV  DG +V LTS D             
Sbjct: 7    LSEAEAGISCFASSLPGFRGVLKHRYADFIVHEVARDGALVQLTSFDLPTESVGVNEEDK 66

Query: 237  XXXXADRNYTEEIELFRLLAGDADTELLRGFLDK------NDAPPIVLSPDPDKSHRAEV 398
                A+ ++++ +E FR L GDAD   LRG L+K       D  P++LSPD DK+HR+EV
Sbjct: 67   AAPSAEADHSQALESFRSLCGDADCNALRGLLEKVSGEGGGDVSPVILSPDADKAHRSEV 126

Query: 399  HNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXX----DG 566
            HNFFKK FKFLVTDT+E  DG  K IRVRF S                          DG
Sbjct: 127  HNFFKKTFKFLVTDTVEHSDGVQKCIRVRFGSEAGVGRGAGGRGRGRKRKNMGSSDWRDG 186

Query: 567  GQYDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSIS 746
              +DSRGS NWP+++GKFL FHLYKENKDTQEALGVIGKMLG Q RSFGFAGTKDKR+++
Sbjct: 187  RPFDSRGSSNWPDNVGKFLRFHLYKENKDTQEALGVIGKMLGLQPRSFGFAGTKDKRAVT 246

Query: 747  TQKVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDI 926
            TQ+VT+FK +A +L ALN RLFGIK+GNFCYVKEGLVLGQL GNRFTITLRGV A+SED+
Sbjct: 247  TQQVTVFKVQASKLLALNKRLFGIKVGNFCYVKEGLVLGQLTGNRFTITLRGVTAESEDM 306

Query: 927  IKAAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVIS 1106
            IK A + LG+NGFINYYGLQRFGSGS+PTHL+G ALLRGEWK AV LILDPREGER  I+
Sbjct: 307  IKIAVDGLGKNGFINYYGLQRFGSGSIPTHLVGAALLRGEWKVAVNLILDPREGERDDIN 366

Query: 1107 EARLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQ 1286
            E R  YK  GD+DMAL+ FPRHLVAERAILQCLKKCPGN+LQ+LK IPRTLRMMYVHSYQ
Sbjct: 367  EVRKRYKEHGDIDMALRNFPRHLVAERAILQCLKKCPGNHLQALKGIPRTLRMMYVHSYQ 426

Query: 1287 SYLWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGDINDSCEDNNLSEL 1466
            SYLWNHAASMRV+K+GI QVV GDLVY+KE P E+    +  + + D  +S E +  SE 
Sbjct: 427  SYLWNHAASMRVEKYGISQVVEGDLVYNKECPSEESTSVDILETDDDHTNSIEIDLCSE- 485

Query: 1467 SDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDGI 1646
               + PEE +   K ++S D   G YTF+DVVLPLPGS+  +P N+IA+ YHEMA+KDGI
Sbjct: 486  ---AQPEESIQSAKIVDSGDFTKGIYTFDDVVLPLPGSQALFPGNEIAEIYHEMARKDGI 542

Query: 1647 NLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKPAE 1826
            +L E+AHG KEFSI SM GGYRR+FQRP  + WEL+TYTD    LAETDLD++S  KP E
Sbjct: 543  SLTENAHGVKEFSITSMKGGYRRVFQRPIGFEWELITYTDDTSSLAETDLDVLSRTKPKE 602

Query: 1827 TKDKSINGNSGGHVEISESEITLDK-NIISEDGSGSTSQVEPVCSADTLAPKMALKIGFT 2003
              +          +   ES+  L+K    S   +G++SQ + + S D    K+ALK+ FT
Sbjct: 603  ANEL---------ISKQESQDKLEKAPDTSVPTNGNSSQEKLIGSPDIRPKKLALKLAFT 653

Query: 2004 LPASCYATMAIRELLKTSTSVAYQKTLN 2087
            LP SCYATMAIRELLKTSTSVAYQKTL+
Sbjct: 654  LPTSCYATMAIRELLKTSTSVAYQKTLS 681


>ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C1A4.09-like [Cucumis
            sativus]
          Length = 719

 Score =  800 bits (2065), Expect = 0.0
 Identities = 427/697 (61%), Positives = 502/697 (72%), Gaps = 18/697 (2%)
 Frame = +3

Query: 51   KPLDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXX 230
            K + E+DVGI  Y+SSLPGFRG+LKQRYSDFIVNEV  DGNVVHLTSLD           
Sbjct: 41   KSVGESDVGILSYISSLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPEVIVSESG 100

Query: 231  XXXXXXADRNYTEEIELFRLLAGDADTELLRGFLDK------NDAPPIVLSPDPDKSHRA 392
                    ++Y  EIELFR LAGD+D E+L  FL +      +D  PIV SPD DK+HR 
Sbjct: 101  PTIVHSTSQSYASEIELFRSLAGDSDAEILEIFLKQINSGVNDDILPIVFSPDTDKTHRT 160

Query: 393  EVHNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQ 572
             VHNFFKK FKFLVTDTI+GPD  SK +RVR  S                          
Sbjct: 161  AVHNFFKK-FKFLVTDTIDGPDSSSKCVRVRVDS------GAQNNRGRFSKKRKERGDKP 213

Query: 573  YDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSISTQ 752
            +DSRGSDNWPEH+GKFL FHLYKENKDTQEALG+IGKMLG Q RSFGFAGTKDKRSISTQ
Sbjct: 214  FDSRGSDNWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGIQTRSFGFAGTKDKRSISTQ 273

Query: 753  KVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDIIK 932
            +VT+FKQ A R+AALN RL GIKLGNF Y++EGL+LGQLLGNRFTITLRGVVA+SED+IK
Sbjct: 274  RVTVFKQHASRIAALNDRLIGIKLGNFSYIQEGLLLGQLLGNRFTITLRGVVANSEDVIK 333

Query: 933  AAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVISEA 1112
            A+AE LGR+GFINY+GLQRFGSGSVPTHL+G +LLRGEWK AV +ILDPREG+  ++  A
Sbjct: 334  ASAEALGRHGFINYFGLQRFGSGSVPTHLVGASLLRGEWKGAVNMILDPREGDILLLMRA 393

Query: 1113 RLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQSY 1292
            R +YK + D+D  LKQ PR+LVAERAILQCLKKCPGNYLQ+LKAIPRTLRMMYVHSYQSY
Sbjct: 394  RDYYKESDDIDGTLKQLPRYLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSY 453

Query: 1293 LWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVE----GDIN--DSCEDNN 1454
            LWNHAASMRVQK+GID+VV+GDLVY KE   E     N  + E    GD N  DSC   +
Sbjct: 454  LWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSC---H 510

Query: 1455 LSELSDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAK 1634
            L E+    LP E+   VKA+ + D+L+GN+T +DVVLPLPGSR+ YP NDIA+ Y+++A 
Sbjct: 511  LEEVCKLGLPTERHKLVKAVTAGDVLSGNFTIDDVVLPLPGSRVLYPTNDIAEVYNDLAT 570

Query: 1635 KDGINLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISER 1814
            KD I+L  S H  KEFSI SMTG YRR+FQRP DY WEL++Y D N+PLA++DL  + + 
Sbjct: 571  KDSISLTNSVHNVKEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKS 630

Query: 1815 KPAETK------DKSINGNSGGHVEISESEITLDKNIISEDGSGSTSQVEPVCSADTLAP 1976
            +  E        DKS N +S   ++ ++  +   KNI  E G              T  P
Sbjct: 631  QSVEISKEEKIADKSKNEDS---LDSTDQSVCCKKNIQLEAGGKENEN-----GQGTQDP 682

Query: 1977 KMALKIGFTLPASCYATMAIRELLKTSTSVAYQKTLN 2087
            +MALK+ FTLPAS YATMAIRELLKTSTSVA+ KTLN
Sbjct: 683  QMALKLSFTLPASSYATMAIRELLKTSTSVAFHKTLN 719


>dbj|BAJ90067.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 700

 Score =  785 bits (2027), Expect = 0.0
 Identities = 417/700 (59%), Positives = 503/700 (71%), Gaps = 25/700 (3%)
 Frame = +3

Query: 63   ETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXXXXXX 242
            E +VGI C+ SSLPGFRGVLK RYSDFIV+EV  DG+VV LTSLD               
Sbjct: 9    EAEVGIACFTSSLPGFRGVLKHRYSDFIVHEVARDGSVVRLTSLDLPDQCVDAKEEEKAA 68

Query: 243  XXADRNYTEEIELFRLLAGDADTELLRGFLDK------NDAPPIVLSPDPDKSHRAEVHN 404
              AD ++++ +E F  L G+AD   LRG L+K       +  P++LSPD DK+HR+EVHN
Sbjct: 69   PAADADHSKALESFSGLCGEADCRALRGLLEKVAAGGEGEFSPVMLSPDADKAHRSEVHN 128

Query: 405  FFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQ---- 572
            FFKKNFKFLVTDT+E  DG  K IRVR  S                       G +    
Sbjct: 129  FFKKNFKFLVTDTVEHSDGVQKYIRVRVGSEAGGGRGRGGGGRGGGGRGGGGRGRKRKNM 188

Query: 573  ----------YDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAG 722
                      +DSRGS +WP H GKFL FHL KENKDTQ+ALGVIGKMLG Q RSFGF+G
Sbjct: 189  NGSDWGDDRPFDSRGSSSWPAHAGKFLRFHLCKENKDTQDALGVIGKMLGLQSRSFGFSG 248

Query: 723  TKDKRSISTQKVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRG 902
            TKDKR+++TQ+VT+FK  A ++AALN RL+GIK+GNFCYVKEGL LGQL+GNRFTITLRG
Sbjct: 249  TKDKRAVTTQQVTVFKVPANKIAALNKRLYGIKVGNFCYVKEGLGLGQLMGNRFTITLRG 308

Query: 903  VVADSEDIIKAAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPR 1082
            VVA+SED+IKAA + LG+NGFINYYGLQRFGSGSVPTHLIG ALLRGEWK+AV L+LDPR
Sbjct: 309  VVAESEDMIKAAVDGLGKNGFINYYGLQRFGSGSVPTHLIGAALLRGEWKSAVHLVLDPR 368

Query: 1083 EGERAVISEARLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLR 1262
            EGER  I E R HYK  GD+DMAL+ FPRHLVAE+AILQCL+KCPGNYLQ+LK IPR LR
Sbjct: 369  EGERDDIKEVREHYKQHGDIDMALRNFPRHLVAEKAILQCLRKCPGNYLQALKGIPRPLR 428

Query: 1263 MMYVHSYQSYLWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGDINDSC 1442
            MMYVH+YQSYLWNHAASMRV+K+GI QV+ GDLVY+KE    +      ++V+   N S 
Sbjct: 429  MMYVHAYQSYLWNHAASMRVEKYGISQVIEGDLVYTKESHPGEATSVGTSEVDSLTNASE 488

Query: 1443 EDNNLSELSDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYH 1622
             D  L      +LPEE +  VK ++SEDL  G Y+FEDVVLPLPGS+  +P N++A  YH
Sbjct: 489  IDICLE-----ALPEENIQSVKLVDSEDLTKGIYSFEDVVLPLPGSQALFPGNEVAQIYH 543

Query: 1623 EMAKKDGINLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDI 1802
            EMAKKDGI+L E+AHG KEFSI SM GGYRR+FQ+P D+ WEL+TYTD +  LAETDLDI
Sbjct: 544  EMAKKDGISLTENAHGVKEFSITSMKGGYRRVFQKPIDFEWELMTYTDDSASLAETDLDI 603

Query: 1803 ISERKPAETK---DKSINGNSGGHVEISESEITLDKNIISEDGSGSTSQVE--PVCSADT 1967
            +S+ K  E K   + + +GNS  +    + E  L+ ++ + +    TS VE   + S+DT
Sbjct: 604  LSKGKLTEAKVANEPAPSGNSASNPPDCKLEEPLETSMPTSE----TSLVENKSIGSSDT 659

Query: 1968 LAPKMALKIGFTLPASCYATMAIRELLKTSTSVAYQKTLN 2087
            L  K+A+K+ FTLPAS YATMAIRELLK STSVAYQKTL+
Sbjct: 660  LPSKLAVKLAFTLPASSYATMAIRELLKDSTSVAYQKTLD 699


>ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
            gi|223548191|gb|EEF49682.1| tRNA pseudouridine synthase
            d, putative [Ricinus communis]
          Length = 753

 Score =  784 bits (2025), Expect = 0.0
 Identities = 419/709 (59%), Positives = 500/709 (70%), Gaps = 32/709 (4%)
 Frame = +3

Query: 57   LDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXXXX 236
            ++E+DVGI+CY+S +PGFRG+LKQRYSDFIVNEV  +GNVVHLTSL              
Sbjct: 52   IEESDVGISCYISKVPGFRGILKQRYSDFIVNEVDNNGNVVHLTSLHVPREIVEVAEERE 111

Query: 237  XXXX--ADRNYTEEIELFRLLAGDADTELLRGFLDKN-------DAPPIVLSPDPDKSHR 389
                    +NY  EIE FR LAGDADT+ L  F+++        +  PI+LSPD DK+HR
Sbjct: 112  EEITNQVGKNYAAEIESFRELAGDADTQRLEAFINQVISEDNCINISPILLSPDSDKAHR 171

Query: 390  AEVHNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGG 569
               HNFFK+  KFLVTDT++GPD  SK IRVR  S                      +  
Sbjct: 172  TATHNFFKEKLKFLVTDTVDGPDASSKCIRVRLNS-----RGNINEGNRNSKKRKDRNDK 226

Query: 570  QYDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSIST 749
             +DSRGSD+WPEHLGKFL FHLYKENKDTQEA+G+IGKMLG Q RSFGFAGTKDKRS+ST
Sbjct: 227  PFDSRGSDHWPEHLGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVST 286

Query: 750  QKVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDII 929
            Q+VT+FKQ A RLAALN RL GIK+G+FCYV EGL+LGQLLGNRFT+TLRGVVADSED I
Sbjct: 287  QRVTVFKQHASRLAALNDRLIGIKVGDFCYVNEGLLLGQLLGNRFTVTLRGVVADSEDTI 346

Query: 930  KAAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVI-- 1103
            K +A+ LGR+GFINY+GLQRFGSGSVPTHLIG ALLRGEWK AV +ILDPREG+  ++  
Sbjct: 347  KGSADSLGRHGFINYFGLQRFGSGSVPTHLIGAALLRGEWKYAVSMILDPREGDILLLVI 406

Query: 1104 -----SEARLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMM 1268
                   AR +YK + D+D  L+Q PR+L AERA+LQCLKKCPGNYLQ+LKAIPRTLRMM
Sbjct: 407  CFMWMRMAREYYKESDDIDGTLRQLPRYLTAERAVLQCLKKCPGNYLQALKAIPRTLRMM 466

Query: 1269 YVHSYQSYLWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGDINDSCED 1448
            YVHSYQSYLWNHAASMRVQK+G DQVV+GDLVY K    E+  G   +  E   +D CED
Sbjct: 467  YVHSYQSYLWNHAASMRVQKYGTDQVVVGDLVYCKGDDTEREIGSANSACE---DDDCED 523

Query: 1449 ----NNLSELSDASLPEEKVHFVK---AINSEDLLTGNYTFEDVVLPLPGSRIQYPENDI 1607
                +NL E S   L E K   VK   A+N+EDL TGNYT  DV+LP+PGSR+ YP NDI
Sbjct: 524  MYGCSNLDETSGTDLSERKDTLVKVEQAVNAEDLSTGNYTINDVILPMPGSRVSYPTNDI 583

Query: 1608 ADSYHEMAKKDGINLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAE 1787
            A  YH++A+KD INL ES H AKEFSI SMTG YRR+FQ+P D+ WE+L+YTDG  PLAE
Sbjct: 584  AKVYHDLAEKDAINLAESVHSAKEFSITSMTGSYRRVFQKPMDFEWEILSYTDGTTPLAE 643

Query: 1788 TDLDIISE------RKPAETKDKSINGNSG--GHVEISESEITLDKNIISE-DGSGSTSQ 1940
            TD++ +++       K  ETK       S        S +++ L      E +     ++
Sbjct: 644  TDMEKLAKAKSIELNKEEETKKNDTKSPSDCMRQPMSSGNDLHLSAEYNREGEREVEVAK 703

Query: 1941 VEPVCSADTLAPKMALKIGFTLPASCYATMAIRELLKTSTSVAYQKTLN 2087
            VEP+   +T   + ALK+ FTLPASCYATMAIRELLKTSTSVA+ KTLN
Sbjct: 704  VEPLYGPNTRGAQTALKLTFTLPASCYATMAIRELLKTSTSVAFHKTLN 752


>ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citrus clementina]
            gi|557535111|gb|ESR46229.1| hypothetical protein
            CICLE_v10003382mg [Citrus clementina]
          Length = 697

 Score =  783 bits (2023), Expect = 0.0
 Identities = 411/694 (59%), Positives = 504/694 (72%), Gaps = 21/694 (3%)
 Frame = +3

Query: 51   KPLDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXX 230
            K +DE+D GI C++S+LPGFRG+LKQRY DFIVNEV  D  VVHLTSLD           
Sbjct: 2    KTVDESDAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVEHN 61

Query: 231  XXXXXXA-DRNYTEEIELFRLLAGDADTELLRGFLDK-------NDAPPIVLSPDPDKSH 386
                    +R+Y  EIE FR LAGD+D + L   +++       +  PPIVLS + DKSH
Sbjct: 62   ETKASDQLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDKSH 121

Query: 387  RAEVHNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDG 566
            R  +HNFFK NFKFLVTDT++GPD  SK IRVR  S                        
Sbjct: 122  RTAIHNFFKDNFKFLVTDTVDGPDASSKCIRVRLNS-----GGNNNSMGRNSKKRKERGD 176

Query: 567  GQYDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSIS 746
              +DSRGS+NWPE LGKFL FHLYKENKDTQEALG+I KMLG   RSFGFAGTKDKRS+S
Sbjct: 177  NPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVS 236

Query: 747  TQKVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDI 926
            TQ+VT+FKQRA +LAALN RL GI+LG+FCYVKEGL+LGQLLGNRFTITLRGVV DSED+
Sbjct: 237  TQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 296

Query: 927  IKAAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVIS 1106
            IKA+A  LGRNGFINY+GLQRFGSGSVPTHL+G  LLRGEWK+AV +ILDPREG+  ++ 
Sbjct: 297  IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGD-ILLF 355

Query: 1107 EARLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQ 1286
            +AR +YK T D+D  L++ PRHLVAERAILQCLKKCPGNYLQ+LKAIPRTLRMMYVHSYQ
Sbjct: 356  KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 415

Query: 1287 SYLWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGD-INDSCEDNNLSE 1463
            S+LWNHAAS RVQKHG + VV+GDLV+ K    EK  G    + E +  ND+ + ++L E
Sbjct: 416  SFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDE 475

Query: 1464 LSDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDG 1643
            + +   P+ + + VK + +ED+ +G YT +DVVLPLPGSR+ YP ND+A+ YH +A+KDG
Sbjct: 476  VPETDHPDGRHNLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDG 535

Query: 1644 INLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKPA 1823
            INL ES H  KEFSI SMTG YRR+FQ+P D+ WELLTY DGN PLAETDLD I++ K A
Sbjct: 536  INLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKDKLA 595

Query: 1824 E--TKDKSINGNS----GGHVEISESEITLDKNIISEDGSGSTSQ------VEPVCSADT 1967
                +++++ GN        ++ SES ++ D  + +E+   + ++      VE VC AD+
Sbjct: 596  NIVKEEEAVCGNKKKDPSDCMKQSES-LSKDIKLSTENNEAACAKEVKQPHVESVCGADS 654

Query: 1968 LAPKMALKIGFTLPASCYATMAIRELLKTSTSVA 2069
               +MALK+G TLP+SCYATMAIRELLKTSTSV+
Sbjct: 655  QGKQMALKLGLTLPSSCYATMAIRELLKTSTSVS 688


>ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Populus trichocarpa]
            gi|550338143|gb|ERP60572.1| hypothetical protein
            POPTR_0005s05300g [Populus trichocarpa]
          Length = 752

 Score =  783 bits (2022), Expect = 0.0
 Identities = 413/705 (58%), Positives = 500/705 (70%), Gaps = 28/705 (3%)
 Frame = +3

Query: 57   LDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXXXX 236
            ++E+DVGI CY+S LPGFRG+LKQRY+DFIVNEV  DGNVVHLT L+             
Sbjct: 55   MEESDVGILCYISQLPGFRGILKQRYADFIVNEVDTDGNVVHLTCLEPPPQMVEETKECG 114

Query: 237  XXXXADR-----NYTEEIELFRLLAGDADTELLRGFLDKNDA--------PPIVLSPDPD 377
                 ++     +Y  EIELFR LAGD+D E L   + + D+        P IVLSPD D
Sbjct: 115  AKVSDEKMSESKSYEAEIELFRSLAGDSDAEKLESLISQVDSCTGSEDSVPHIVLSPDSD 174

Query: 378  KSHRAEVHNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXX 557
            K+HR  VHNFFK+NFKFLVTDT +GPD  SK IRVR  S                     
Sbjct: 175  KTHRTAVHNFFKQNFKFLVTDTTDGPDASSKCIRVRLDS--------GGHKNNGRNSKKR 226

Query: 558  XDGGQ--YDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKD 731
             + G+  +DSRGS NWPEHLGKFL FHLYKENKDTQEALG+IGKMLG Q +SFGFAGTKD
Sbjct: 227  KERGEKPFDSRGSSNWPEHLGKFLRFHLYKENKDTQEALGIIGKMLGIQSKSFGFAGTKD 286

Query: 732  KRSISTQKVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVA 911
            KR++STQ+VT+FKQ+A RLAALN RL GIK+G+FC+VKEGL+LG+LLGNRFT+TLRGV+A
Sbjct: 287  KRAVSTQRVTVFKQQASRLAALNDRLIGIKVGDFCHVKEGLLLGRLLGNRFTVTLRGVIA 346

Query: 912  DSEDIIKAAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGE 1091
            DSED IKAAA+ LGR+GFINY+GLQRFG+GSVPTHLIG ALLRGEWKTAV +ILDPREG+
Sbjct: 347  DSEDTIKAAADSLGRHGFINYFGLQRFGTGSVPTHLIGAALLRGEWKTAVSMILDPREGD 406

Query: 1092 -----RAVISEARLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRT 1256
                   VI +AR +YK + D++  L+Q PRHLVAERA+LQCLKKCPG+YLQ++KAIPRT
Sbjct: 407  ILLLFPYVIRKAREYYKESNDIEGTLRQLPRHLVAERAVLQCLKKCPGDYLQAMKAIPRT 466

Query: 1257 LRMMYVHSYQSYLWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEK-LDGFNKNDVEGDIN 1433
            LRMMYVH YQSYLWNHAAS RVQK+G DQV++GDLVY K    EK   G N    + + +
Sbjct: 467  LRMMYVHGYQSYLWNHAASERVQKYGFDQVLLGDLVYCKGDDSEKETVGVNSECNDDNCD 526

Query: 1434 DSCEDNNLSELSDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIAD 1613
            D+ + ++L E S   L E K   VK +  ED+ TGNYT +DVVLP+PGSR+ +P N+IA 
Sbjct: 527  DTYDCSHLDETSGTDLLERKNTLVKVVTVEDMSTGNYTVDDVVLPMPGSRVIFPTNEIAK 586

Query: 1614 SYHEMAKKDGINLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETD 1793
             YH++AKKD INL ES H  KEFSI SMTG YRR+FQ+P D+ WELLTY D N PLAETD
Sbjct: 587  VYHDLAKKDAINLTESVHRVKEFSITSMTGSYRRVFQKPLDFEWELLTYNDSNKPLAETD 646

Query: 1794 LDIISERKPAETKDKSINGNSGGHVEISE-------SEITLDKNIISEDGSGSTSQVEPV 1952
            LD IS+        +   G      ++S+       S  ++  +  + + S    + E V
Sbjct: 647  LDKISKTGSTNIIKQEEQGKGDEDNDLSDCTKLPVCSRNSIALSSDTNEESEREVESEQV 706

Query: 1953 CSADTLAPKMALKIGFTLPASCYATMAIRELLKTSTSVAYQKTLN 2087
              ++    +MALK+  TLPASCYATMAIRELLKTSTSVAY KTLN
Sbjct: 707  SGSNWQETQMALKLSLTLPASCYATMAIRELLKTSTSVAYHKTLN 751


>gb|EOY11113.1| Pseudouridine synthase family protein, putative isoform 1 [Theobroma
            cacao]
          Length = 763

 Score =  782 bits (2020), Expect = 0.0
 Identities = 413/724 (57%), Positives = 498/724 (68%), Gaps = 47/724 (6%)
 Frame = +3

Query: 57   LDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXXXX 236
            + E+DVGI C++S LPGFRG+LKQRYSDFIVNEV  +GNVVHLTSLD             
Sbjct: 46   ITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPPEVMIDVFSLN 105

Query: 237  XXXXA------------DRNYTEEIELFRLLAGDADTELLRGFLDK------NDAPPIVL 362
                A            ++ Y  EI  FR LAGD D + L  F+++       D  PIVL
Sbjct: 106  KFTQAVQEGETKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICPIVL 165

Query: 363  SPDPDKSHRAEVHNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXX 542
            SPD DKSHR  +HNFFK+N +FLVTDT++GPD  SK IRVR  S                
Sbjct: 166  SPDSDKSHRTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNS-------GNNNKGRNS 218

Query: 543  XXXXXXDGGQYDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAG 722
                      YDSRGS +WPEHLGKFL FHLYKENKDTQEALG+IGKMLG Q RSFGFAG
Sbjct: 219  KKRKERGDKPYDSRGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAG 278

Query: 723  TKDKRSISTQKVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRG 902
            TKDKRS+STQ+VT+FKQ A RLAALN RL GIK+G+FCYVK+  +LGQLLGNRFTI LRG
Sbjct: 279  TKDKRSVSTQRVTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRG 338

Query: 903  VVADSEDIIKAAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPR 1082
            +VADSE+ IKA+ E LGR+GFINY+GLQRFGSGS+PTH IG  LLRGEW+ A   ILDPR
Sbjct: 339  IVADSEETIKASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPR 398

Query: 1083 EGERAVIS------------------EARLHYKGTGDVDMALKQFPRHLVAERAILQCLK 1208
            EG+   ++                   AR +YK TGD++  L+Q PRHLVAERA+LQCLK
Sbjct: 399  EGDILSLTFFFPFLLGKALFRCLTTQRAREYYKETGDIEGTLRQLPRHLVAERAMLQCLK 458

Query: 1209 KCPGNYLQSLKAIPRTLRMMYVHSYQSYLWNHAASMRVQKHGIDQVVIGDLVYSKEGPHE 1388
            KCPGNYLQ+LKAIPRTLRMMYVHSYQSYLWNHAASMRV+K+G ++VV+GDLVY K    E
Sbjct: 459  KCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVEKYGSNEVVLGDLVYCKGNDAE 518

Query: 1389 KLDGFNKNDVEGDINDSCEDNNLSELSDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLP 1568
            K+        + +  D+ + + L E+S   LPE K + VKAI + D+ TGNYT EDVVLP
Sbjct: 519  KVKVVPSEHEDNNFEDAYDCSQLDEISGTDLPEGKNNLVKAITAADISTGNYTIEDVVLP 578

Query: 1569 LPGSRIQYPENDIADSYHEMAKKDGINLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWE 1748
            +PGSRI YP NDIA+ YH+MAKKDGI+L ES H  KEFSI SMTG YRR+FQ+P D+ WE
Sbjct: 579  MPGSRIIYPVNDIANVYHDMAKKDGISLTESVHNIKEFSITSMTGSYRRVFQKPIDFEWE 638

Query: 1749 LLTYTDGNMPLAETDLDIISERKPAE--TKDKSINGNSG-------GHVEISESEITLDK 1901
            LL+YTDG++ L+ETDLD I++ KP     ++K  +G  G        H+E  E +     
Sbjct: 639  LLSYTDGSIALSETDLDKIAKTKPVNLVKEEKPTDGTEGQDSSDHMEHIESFEDDKKFST 698

Query: 1902 NIISEDGS--GSTSQVEPVCSADTLAPKMALKIGFTLPASCYATMAIRELLKTSTSVAYQ 2075
              +  +GS      Q+  +  +++L  + ALK+ FTLPASCYATMAIRELLKTSTSVA+ 
Sbjct: 699  GNVEVEGSREAEPPQIHSLPESNSLGTQKALKLAFTLPASCYATMAIRELLKTSTSVAFH 758

Query: 2076 KTLN 2087
            KTLN
Sbjct: 759  KTLN 762


>ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 2
            [Fragaria vesca subsp. vesca]
          Length = 693

 Score =  782 bits (2020), Expect = 0.0
 Identities = 399/696 (57%), Positives = 509/696 (73%), Gaps = 21/696 (3%)
 Frame = +3

Query: 63   ETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXXXXXX 242
            E++VGI CY+S LPGFRG+LKQRYSDF+VNEV ++GNVVHLT+L+               
Sbjct: 5    ESEVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAKTED 64

Query: 243  XXADRNYTEEIELFRLLAGDADTELLRGFL------DKNDAPPIVLSPDPDKSHRAEVHN 404
              A ++Y+ EIE FR LA   D E L  F+       ++   PIVLSPD DK HR  VHN
Sbjct: 65   A-ASKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAVHN 123

Query: 405  FFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQYDSR 584
            FFK+N KFLVTD ++GPD  SK IRVR  S                          +DSR
Sbjct: 124  FFKENLKFLVTDAVDGPDASSKCIRVRLNS------GGQNGRGRNSKKRKERGDKPFDSR 177

Query: 585  GSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSISTQKVTI 764
            G D+W EH+GKFL FHL+KENKDTQEALGVIGKMLG Q R+FGFAGTKDKR+++ Q+VT+
Sbjct: 178  GVDDWSEHVGKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTV 237

Query: 765  FKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDIIKAAAE 944
            FKQ A RLAALN RL GIK+G+FCYVKEGL LGQLLGNRFTITLRGVVADSEDII+A+A 
Sbjct: 238  FKQFASRLAALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASAN 297

Query: 945  CLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVISEARLHY 1124
             LG+ GF+NY+GLQRFGSGS+PTHLIG +LLRGEWK+ V ++L+PREGER VI+EAR +Y
Sbjct: 298  ALGKQGFVNYFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYY 357

Query: 1125 KGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQSYLWNH 1304
            K + D+D  L++ PR+LVAERA+LQCLKKCPGNY Q+LKA+PRTLRMMYVHSYQSYLWNH
Sbjct: 358  KESNDIDGTLRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNH 417

Query: 1305 AASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKND-VEGDIND-SCED----NNLSEL 1466
            AASMRVQK+G D+VV+GDLVY K    EK+ G   ++ V+ ++ND +C+D    N+L ++
Sbjct: 418  AASMRVQKYGTDRVVVGDLVYCKGHETEKVTGIVSSECVDENVNDENCDDTFDPNHLDDI 477

Query: 1467 SDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDGI 1646
            S+ ++PE +V  VKA+ +ED+  G YT +D+VLPLPGSR+ +PENDIA  +H++AKKDGI
Sbjct: 478  SETNVPEARVSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKKDGI 537

Query: 1647 NLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKPAE 1826
            +L ES H  KEFSI ++TG YRR+FQ+P D+ W++L Y DGN+PL ETD + I++ KP  
Sbjct: 538  SLTESVHNVKEFSITNVTGSYRRVFQKPVDFEWDILKYIDGNIPLVETDFEKIAKTKPVN 597

Query: 1827 TKDK---SINGNSGGHVEISESEITLDKNIISEDGSGSTSQVEPVCSADTL------APK 1979
               +    ++G+   H  I +SE +++   + +  +   S+ E +   ++L        +
Sbjct: 598  VNKEYPTGVSGDGSLHDRIKQSECSVNDVQLPKKDNEVESEGEKLPHVESLGGPIPQGTQ 657

Query: 1980 MALKIGFTLPASCYATMAIRELLKTSTSVAYQKTLN 2087
            +ALK+ FTLPASCYATMAIRELLKTSTSVA+ KTLN
Sbjct: 658  IALKLSFTLPASCYATMAIRELLKTSTSVAFHKTLN 693


>gb|EMJ09385.1| hypothetical protein PRUPE_ppa020985mg [Prunus persica]
          Length = 691

 Score =  776 bits (2005), Expect = 0.0
 Identities = 409/696 (58%), Positives = 500/696 (71%), Gaps = 16/696 (2%)
 Frame = +3

Query: 51   KPLDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXX 230
            K  +E DVGI CY+S LPGFRG+LKQRYSDF+VNEV  + NVVHLT+LD           
Sbjct: 2    KTTEEPDVGIFCYISQLPGFRGILKQRYSDFMVNEVDTEENVVHLTNLDAPAETVKEIET 61

Query: 231  XXXXXXADRNYTEEIELFRLLAGDADTELLRGFLDKNDAP------PIVLSPDPDKSHRA 392
                  + ++YT EIE FR L    D E L   +++ ++       PIVLSPD DKSHR 
Sbjct: 62   KTHDATS-KDYTTEIESFRSLVDPDDAERLEAIINQINSGSEDSILPIVLSPDYDKSHRT 120

Query: 393  EVHNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQ 572
             VHNFFK+NFKFLVTDT++GPD  SK IRVR  S                          
Sbjct: 121  AVHNFFKENFKFLVTDTVDGPDASSKCIRVRINS------GGQNSRGRNSRKRKERGDKP 174

Query: 573  YDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSISTQ 752
            +DSRGSD+W E++GKFL FHLYKENKDTQEALG+I KMLG Q RSFGFAGTKDKR+++TQ
Sbjct: 175  FDSRGSDDWSENVGKFLRFHLYKENKDTQEALGIIAKMLGIQPRSFGFAGTKDKRAVTTQ 234

Query: 753  KVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDIIK 932
            +VT+FKQ A RLAALN RL GIK+G+FCYVKEGLVLGQLLGNRFTITLRGVVADSED IK
Sbjct: 235  RVTVFKQLASRLAALNDRLIGIKVGDFCYVKEGLVLGQLLGNRFTITLRGVVADSEDTIK 294

Query: 933  AAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGE--RAVIS 1106
            A+   LG+ GFINY+GLQRFGSGSVPTHLIG  LLRGEWK+ V L LDPREG+    ++ 
Sbjct: 295  ASVIALGKQGFINYFGLQRFGSGSVPTHLIGATLLRGEWKSTVSLFLDPREGDILLMLLG 354

Query: 1107 EARLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQ 1286
             AR +YK T D++  L+Q PRHLV+E+AILQCLKKCPGNYLQ+LKAIPRTLRMMYVHSYQ
Sbjct: 355  IAREYYKETNDIEGTLRQLPRHLVSEKAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 414

Query: 1287 SYLWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKL-DGFNKNDVEGDINDSCEDNNLSE 1463
            SYLWNHAASMRVQK+G D+VV+GDLVY K    EK+ +  +   V+ + ND+ +  +L +
Sbjct: 415  SYLWNHAASMRVQKYGTDRVVLGDLVYCKGNETEKVSEVVSSKCVDENGNDTLDPIDLDD 474

Query: 1464 LSDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDG 1643
            +S  +LPEE+++ VKA+ +ED+L+GNYT +DVVLP+PGSR+ +PENDIA  +H++AKKD 
Sbjct: 475  ISGTNLPEERLNLVKAVTAEDILSGNYTIDDVVLPMPGSRVIFPENDIAHVFHDLAKKDA 534

Query: 1644 INLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKPA 1823
            I+L ES H  KEFSI SMTG YRR+FQ+P D+ WE+L Y DGN PL +TD D     K A
Sbjct: 535  ISLTESVHNVKEFSITSMTGSYRRVFQKPMDFEWEILKYIDGNKPLVDTDFD-----KIA 589

Query: 1824 ETKDKSINGNSGGHVEISESEITLDKNI-ISEDGSGSTS------QVEPVCSADTLAPKM 1982
            +TK  S+N +   H +  +SE  LD +I +  D +G+ +      Q E +C  +    + 
Sbjct: 590  KTKPSSLNEDGRLHDKTKQSE-CLDNDIGLQTDDNGAKAKGEELPQAESLCDTNPQETQT 648

Query: 1983 ALKIGFTLPASCYATMAIRELLKTSTSVAYQKTLNP 2090
            ALK+ FTLPASCYATMAIRELLKTSTSV      NP
Sbjct: 649  ALKLSFTLPASCYATMAIRELLKTSTSVCASFKSNP 684


>ref|XP_003568149.1| PREDICTED: pseudouridylate synthase 7 homolog [Brachypodium
            distachyon]
          Length = 693

 Score =  776 bits (2003), Expect = 0.0
 Identities = 407/696 (58%), Positives = 494/696 (70%), Gaps = 21/696 (3%)
 Frame = +3

Query: 63   ETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXXXXXX 242
            E +VGITC+ SSLPGFRGVLK RYSDFIV+EV  DG+VV LTS D               
Sbjct: 9    EPEVGITCFTSSLPGFRGVLKHRYSDFIVHEVARDGSVVRLTSFDLPDECVDVKEEEKAA 68

Query: 243  XXADRNYTEEIELFRLLAGDADTELLRGFLDKNDA------PPIVLSPDPDKSHRAEVHN 404
              AD ++++ +E F  L+ DAD + L+G L++  A       P++LSPD DK+HR+EVHN
Sbjct: 69   PPADADHSQALESFHALSTDADCDALKGLLERVSAGGDSGFSPVILSPDADKAHRSEVHN 128

Query: 405  FFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQ---- 572
            FFKKNFKFLVTDT+E  DG  K IRVR  S                        G     
Sbjct: 129  FFKKNFKFLVTDTVEHSDGVKKCIRVRVGSEAGGGRGSRGRGGGGRGKKRKNMNGSDWRD 188

Query: 573  ---YDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSI 743
               +D RGS NWP H+GKFL FHL KENKDTQ+ALGVIGKMLG Q R+FGF+GTKDKR++
Sbjct: 189  DTPFDRRGSTNWPPHIGKFLRFHLCKENKDTQDALGVIGKMLGLQPRAFGFSGTKDKRAV 248

Query: 744  STQKVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSED 923
            +TQ+VT+FK  A +LAALN RLFGIK+GNFCYVKEGL LGQL+GNRFTITLRGVVA+SE 
Sbjct: 249  TTQQVTVFKVPANKLAALNKRLFGIKVGNFCYVKEGLGLGQLMGNRFTITLRGVVAESEG 308

Query: 924  IIKAAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVI 1103
            +IKAA + LG+NGFINYYGLQRFGS SVPTHL+G ALLRGEWKTAV LILDPREGER  I
Sbjct: 309  VIKAAVDSLGKNGFINYYGLQRFGSSSVPTHLVGSALLRGEWKTAVKLILDPREGERDDI 368

Query: 1104 SEARLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSY 1283
             + R HYK  GD+DMAL+ FPRHLVAE+AILQCL+KCP NYLQ+LK IPRTLRMMYVHSY
Sbjct: 369  KKVREHYKEHGDIDMALRNFPRHLVAEKAILQCLRKCPENYLQALKGIPRTLRMMYVHSY 428

Query: 1284 QSYLWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGDINDSCEDNNLSE 1463
            QSYLWNHAASMRVQK+GI QV+ GDL+YSKE    +      ++ + D  +S E +  SE
Sbjct: 429  QSYLWNHAASMRVQKYGISQVIEGDLIYSKESHPGEATSVGTSETDDDHANSSEIDICSE 488

Query: 1464 LSDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDG 1643
                +LPEE +  VK ++SEDLL G Y+FEDVVLPLPGS+  +P N++A+ YHEMAKKDG
Sbjct: 489  ----TLPEENIQSVKIVDSEDLLKGIYSFEDVVLPLPGSQALFPGNEVAEIYHEMAKKDG 544

Query: 1644 INLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKPA 1823
            I+L  SAHG KEFSI +M G YRR+FQRP D+ WEL+ YTD +  LAETD+DI+S+ K  
Sbjct: 545  ISLTGSAHGVKEFSITNMKGSYRRVFQRPIDFEWELMKYTDESASLAETDMDILSKVKLT 604

Query: 1824 ETK-----DKSINGNSGGHVEI---SESEITLDKNIISEDGSGSTSQVEPVCSADTLAPK 1979
            E K        ++ +     ++   SE+ +   +  + E+ S  +S + P         K
Sbjct: 605  EAKANEPGSSGVSNSKPADCKLESPSENSMPTSETSLGENKSNGSSDISP--------SK 656

Query: 1980 MALKIGFTLPASCYATMAIRELLKTSTSVAYQKTLN 2087
            +A+K+ FTLPAS YATMAIRELLK  TSVAYQKTL+
Sbjct: 657  LAVKLAFTLPASTYATMAIRELLKNPTSVAYQKTLD 692


>ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            tuberosum]
          Length = 685

 Score =  774 bits (1998), Expect = 0.0
 Identities = 410/703 (58%), Positives = 505/703 (71%), Gaps = 24/703 (3%)
 Frame = +3

Query: 51   KPLDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXX 230
            K +DE+DVGI+CY+S+LPGFRG+LKQRYSDFIVNEV LD NVVHLT L+           
Sbjct: 2    KTMDESDVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLTLLEAPKECSENKDV 61

Query: 231  XXXXXXADRNYTEEIELFRLLAGDADTELLRGFLDKNDA------PPIVLSPDPDKSHRA 392
                   +R+Y  EIE FR LAG++D + L+ F+D+ ++        IVLSP  DKSHR 
Sbjct: 62   NISDQL-NRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRT 120

Query: 393  EVHNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQ 572
             +HNFFK+  KFLVTDTI+G +  SK +RVR  +                      D  +
Sbjct: 121  AIHNFFKERLKFLVTDTIDGVEDQSKCVRVRLNN------DRNNGRGRSSRKRKDRDDKR 174

Query: 573  YDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSISTQ 752
            YDSRGSD+WP HLGKFL FHL+KENKDTQEAL VI KMLG Q RSFGFAGTKDKR++STQ
Sbjct: 175  YDSRGSDSWPGHLGKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQ 234

Query: 753  KVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDIIK 932
            +VT+FKQ+A +LAALN RL GIK+G+FC+VKEGL+LGQL GNRFTITLRGV A+SEDIIK
Sbjct: 235  RVTVFKQQASKLAALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIK 294

Query: 933  AAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVISEA 1112
            A+A  LG++GFINY+GLQRFGS SVPTHLIG ALLRGEWK AV LILDPREGE+  IS  
Sbjct: 295  ASAVALGKHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNAISTV 354

Query: 1113 RLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQSY 1292
            R +YK +GD+D  L+Q PR+LVAE+AILQCLK+ PGNYLQ+LKAIPRTLRMMYVHSYQSY
Sbjct: 355  REYYKESGDIDGTLRQLPRYLVAEKAILQCLKRSPGNYLQALKAIPRTLRMMYVHSYQSY 414

Query: 1293 LWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGDINDSCEDNNLSELSD 1472
            LWNHAASMRVQKHG DQVV+GDLVYSKE  ++  + F     + + N+  + +NL E+S+
Sbjct: 415  LWNHAASMRVQKHGFDQVVLGDLVYSKE-EYKVKESFVAECEDVNDNNMDDYSNLDEISE 473

Query: 1473 ASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDGINL 1652
              LPEE+   VK IN EDL +G Y  +DV+LPLPGSR+ YP NDI + Y ++A+KD I+L
Sbjct: 474  TDLPEERNIPVKVINEEDLKSGTYAIDDVLLPLPGSRVIYPSNDIGEVYCDLAQKDDISL 533

Query: 1653 RESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDII--------- 1805
             E+AH  KEFSI +MTG YRR+FQ+P D+ WELL+YTDG +PLAETD D+I         
Sbjct: 534  TETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIANSVKSKVR 593

Query: 1806 -------SERKPAETKDKSINGN--SGGHVEISESEITLDKNIISEDGSGSTSQVEPVCS 1958
                   S+  PA++   S+ G+  SG   ++ E +I  +  + SE      +  E    
Sbjct: 594  EEDPTNGSKELPADSSAISVGGDMLSG---KVCEEKINNEAGMQSEKSQSGGNAEE---- 646

Query: 1959 ADTLAPKMALKIGFTLPASCYATMAIRELLKTSTSVAYQKTLN 2087
                  +MALK+ FTLPASCYATMA+RELLKTSTSVA+ K+LN
Sbjct: 647  -----SQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLN 684


>ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            lycopersicum]
          Length = 685

 Score =  773 bits (1997), Expect = 0.0
 Identities = 407/695 (58%), Positives = 507/695 (72%), Gaps = 16/695 (2%)
 Frame = +3

Query: 51   KPLDETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXX 230
            K +DE+DVGI+CY+S+LPGFRG+LKQRYSDFIVNEV LD NVVHL SL+           
Sbjct: 2    KTMDESDVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLNSLEAPKECSENKDV 61

Query: 231  XXXXXXADRNYTEEIELFRLLAGDADTELLRGFLDKNDA------PPIVLSPDPDKSHRA 392
                   +R+Y  EIE FR LAG++D + L+ F+D+ ++        IVLSP  DKSHR 
Sbjct: 62   NISDQL-NRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRT 120

Query: 393  EVHNFFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQ 572
            E+HNFFK+  KFLVTDTI+G +  SK +RVR  +                      +  +
Sbjct: 121  EIHNFFKERLKFLVTDTIDGVEDQSKCVRVRLNN------DRNNGRGRYSRKRKDRNDKR 174

Query: 573  YDSRGSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSISTQ 752
            YDSRGSD+WP HLGKFL FHL+KENKDTQEAL VI KMLG Q RSFGFAGTKDKR++STQ
Sbjct: 175  YDSRGSDSWPGHLGKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQ 234

Query: 753  KVTIFKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDIIK 932
            +VT+FKQ+A +LAALN RL GIK+G+FC+VKEGL+LGQL GNRFTITLRGV A+SEDIIK
Sbjct: 235  RVTVFKQQASKLAALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIK 294

Query: 933  AAAECLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVISEA 1112
            A+A  LG++GFINY+GLQRFGS SVPTHLIG ALLRGEWK AV LILDPREGE+  IS  
Sbjct: 295  ASAVALGKHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNTISTV 354

Query: 1113 RLHYKGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQSY 1292
            R +YK +GD+D  L+Q PR+LVAE+AILQ LK+ PGNYLQ+LKAIPRTLRMMYVHSYQSY
Sbjct: 355  REYYKESGDIDGTLRQLPRYLVAEKAILQSLKRSPGNYLQALKAIPRTLRMMYVHSYQSY 414

Query: 1293 LWNHAASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKNDVEGDINDSCED--NNLSEL 1466
            LWNHAASMRVQKHG DQVV+GDLVYSKE    K     + +   D+ND+  D  +NL E+
Sbjct: 415  LWNHAASMRVQKHGFDQVVLGDLVYSKEDYKVKESFVAECE---DVNDNNMDDYSNLDEI 471

Query: 1467 SDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDGI 1646
            S+  LPEE+   VK IN EDL +G YT +DV+LPL GSR+ YP NDI + Y ++A+KDGI
Sbjct: 472  SETDLPEERNIPVKVINEEDLKSGTYTIDDVLLPLSGSRVIYPSNDIGEVYRDLAQKDGI 531

Query: 1647 NLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKPAE 1826
            +L E+AH  KEFSI +MTG YRR+FQ+P D+ WELL+YTDG +PLAETD D+I++   ++
Sbjct: 532  SLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKSK 591

Query: 1827 TKDKSINGNSGGHVEISESEITLDKNIIS--------EDGSGSTSQVEPVCSADTLAPKM 1982
              ++ +  N    +    S I++  +++S         + +G  S+ +     +    +M
Sbjct: 592  VIEE-VPSNGSKELPADSSAISVGGDMLSGKVCEETINNEAGMQSE-KSQSGGNAEESQM 649

Query: 1983 ALKIGFTLPASCYATMAIRELLKTSTSVAYQKTLN 2087
            ALK+ FTLPASCYATMA+RELLKTSTSVA+ K+LN
Sbjct: 650  ALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLN 684


>ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 1
            [Fragaria vesca subsp. vesca]
          Length = 701

 Score =  772 bits (1993), Expect = 0.0
 Identities = 394/689 (57%), Positives = 503/689 (73%), Gaps = 21/689 (3%)
 Frame = +3

Query: 63   ETDVGITCYVSSLPGFRGVLKQRYSDFIVNEVGLDGNVVHLTSLDXXXXXXXXXXXXXXX 242
            E++VGI CY+S LPGFRG+LKQRYSDF+VNEV ++GNVVHLT+L+               
Sbjct: 5    ESEVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAKTED 64

Query: 243  XXADRNYTEEIELFRLLAGDADTELLRGFL------DKNDAPPIVLSPDPDKSHRAEVHN 404
              A ++Y+ EIE FR LA   D E L  F+       ++   PIVLSPD DK HR  VHN
Sbjct: 65   A-ASKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAVHN 123

Query: 405  FFKKNFKFLVTDTIEGPDGDSKRIRVRFCSVXXXXXXXXXXXXXXXXXXXXXDGGQYDSR 584
            FFK+N KFLVTD ++GPD  SK IRVR  S                          +DSR
Sbjct: 124  FFKENLKFLVTDAVDGPDASSKCIRVRLNS------GGQNGRGRNSKKRKERGDKPFDSR 177

Query: 585  GSDNWPEHLGKFLMFHLYKENKDTQEALGVIGKMLGTQQRSFGFAGTKDKRSISTQKVTI 764
            G D+W EH+GKFL FHL+KENKDTQEALGVIGKMLG Q R+FGFAGTKDKR+++ Q+VT+
Sbjct: 178  GVDDWSEHVGKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTV 237

Query: 765  FKQRAKRLAALNSRLFGIKLGNFCYVKEGLVLGQLLGNRFTITLRGVVADSEDIIKAAAE 944
            FKQ A RLAALN RL GIK+G+FCYVKEGL LGQLLGNRFTITLRGVVADSEDII+A+A 
Sbjct: 238  FKQFASRLAALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASAN 297

Query: 945  CLGRNGFINYYGLQRFGSGSVPTHLIGVALLRGEWKTAVGLILDPREGERAVISEARLHY 1124
             LG+ GF+NY+GLQRFGSGS+PTHLIG +LLRGEWK+ V ++L+PREGER VI+EAR +Y
Sbjct: 298  ALGKQGFVNYFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYY 357

Query: 1125 KGTGDVDMALKQFPRHLVAERAILQCLKKCPGNYLQSLKAIPRTLRMMYVHSYQSYLWNH 1304
            K + D+D  L++ PR+LVAERA+LQCLKKCPGNY Q+LKA+PRTLRMMYVHSYQSYLWNH
Sbjct: 358  KESNDIDGTLRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNH 417

Query: 1305 AASMRVQKHGIDQVVIGDLVYSKEGPHEKLDGFNKND-VEGDIND-SCED----NNLSEL 1466
            AASMRVQK+G D+VV+GDLVY K    EK+ G   ++ V+ ++ND +C+D    N+L ++
Sbjct: 418  AASMRVQKYGTDRVVVGDLVYCKGHETEKVTGIVSSECVDENVNDENCDDTFDPNHLDDI 477

Query: 1467 SDASLPEEKVHFVKAINSEDLLTGNYTFEDVVLPLPGSRIQYPENDIADSYHEMAKKDGI 1646
            S+ ++PE +V  VKA+ +ED+  G YT +D+VLPLPGSR+ +PENDIA  +H++AKKDGI
Sbjct: 478  SETNVPEARVSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKKDGI 537

Query: 1647 NLRESAHGAKEFSIISMTGGYRRIFQRPTDYVWELLTYTDGNMPLAETDLDIISERKPAE 1826
            +L ES H  KEFSI ++TG YRR+FQ+P D+ W++L Y DGN+PL ETD + I++ KP  
Sbjct: 538  SLTESVHNVKEFSITNVTGSYRRVFQKPVDFEWDILKYIDGNIPLVETDFEKIAKTKPVN 597

Query: 1827 TKDK---SINGNSGGHVEISESEITLDKNIISEDGSGSTSQVEPVCSADTL------APK 1979
               +    ++G+   H  I +SE +++   + +  +   S+ E +   ++L        +
Sbjct: 598  VNKEYPTGVSGDGSLHDRIKQSECSVNDVQLPKKDNEVESEGEKLPHVESLGGPIPQGTQ 657

Query: 1980 MALKIGFTLPASCYATMAIRELLKTSTSV 2066
            +ALK+ FTLPASCYATMAIRELLKTSTSV
Sbjct: 658  IALKLSFTLPASCYATMAIRELLKTSTSV 686