BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00001023
         (5019 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  2895   0.0  
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  2877   0.0  
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...  2873   0.0  
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...  2871   0.0  
ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [S...  2851   0.0  
gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Trit...  2850   0.0  
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...  2848   0.0  
gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...  2848   0.0  
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z...  2844   0.0  
dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]   2843   0.0  
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su...  2837   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  2804   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  2804   0.0  
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su...  2802   0.0  
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...  2801   0.0  
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su...  2800   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  2796   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...  2796   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...  2796   0.0  
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su...  2796   0.0  

>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 2895 bits (7504), Expect = 0.0
 Identities = 1423/1536 (92%), Positives = 1488/1536 (96%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFP+SPAE+AKV+ VQFGILSPDEIRQMSVV IEH ET+ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETCMA MAECPGHFGHLELAKPM+HIGF+KTVL+IMRCVCFNCSKILA+EDD +
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPKNRLKRIYDACKSKK C GG         D++EP K+ RGGCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKR-RGGCGAQQPNIT 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            +DGMKMVAE+KAPKKK+DDQEQLPEPVERKQ+LSAERVL+VLKRI+DEDCLLLGLNPK+A
Sbjct: 180  VDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            TEFAQLLQF+IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            REDGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVPAPAILKPRP+WTGKQVFNLIIPK I
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NLIRFSAWHSE+ETGFITPGDTMVRIEKGELLSGTLCKKT+GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETIS AKN+VKELIKQA +K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVKELIKQAHDKH 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK EFD V++YE+D +NW P+YMLPEHVEDLKTIREFRNVF+AEVQKLEADR+
Sbjct: 900  KLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRF 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEIATTGDNTWP+PVNLKRLIWNAQKTFK+DLRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960  QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+EAF+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KPEVNKKKELAKNVQCALEYTTLRSVTHATEIW+DPDP  TIIEEDVEFVRSYYEMPDE+
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            V P+KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDL+CIFNDDNA+KLILR+RI
Sbjct: 1200 VDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
             ND+APKGE+QDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+N+F++N+GF+
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNDGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
            PD EWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG +MRCSFEETVDILLDAAV+AE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            +LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSY+EGL+FGMTPARSPISGT
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGT 1499

Query: 329  PYHEGMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            PYHEGMMSPSYLLSPN RASP TDAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2877 bits (7459), Expect = 0.0
 Identities = 1420/1536 (92%), Positives = 1479/1536 (96%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFP+SPAE+AKVR VQFGILSPDEIRQMSVV IEH ET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETC A+MAECPGHFGHLELAKPM+HIGF+KTVL+IMRCVCFNCSKILA+E+D +
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQA KIRNPKNRLK+I DACK+K KCEGG          S+EP KKSRGGCGAQQP +T
Sbjct: 121  FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALD-SDEPVKKSRGGCGAQQPKLT 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            I+GMKM+AEYK  +KK+DD EQLPEPVERKQ LSAERVL+VLKRI+DEDC+LLGLNPKYA
Sbjct: 180  IEGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            +EFAQLLQF++ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            REDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NL+R SAWHSESETGFITPGDT VRIEKGELL+GTLCKKT+GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETISKAKN+VKELI+ AQE+Q
Sbjct: 660  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQ 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK EFD V+KYEID +NWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADR+
Sbjct: 900  KLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRF 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEIATTGDN+WP+PVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV
Sbjct: 960  QLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PGDD +SMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAF+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KP+V+K KE AKNVQCALEYTTLRSVT ATE+W+DPDP STIIEEDV+FV+SYYEMPDEE
Sbjct: 1140 KPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            VAPEKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDLTCIFNDDNAEKLILRIRI
Sbjct: 1200 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
            MND+APKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGK+N+FDE+EGF+
Sbjct: 1260 MNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
            P+VEWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG MMRCSFEETVDILLDAAV+AE D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
             LRGVTENIMLGQLAPIGTG CALYLNDQMLQ AIELQLPSYMEGL+FGMTP+RSPI+GT
Sbjct: 1440 FLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGT 1499

Query: 329  PYHEGMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            PYH+GMMSP+YLLSPN R SP TDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X1 [Setaria italica]
          Length = 1852

 Score = 2873 bits (7447), Expect = 0.0
 Identities = 1413/1537 (91%), Positives = 1481/1537 (96%), Gaps = 1/1537 (0%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFP+SPAE+AKV+ VQFGILSPDEIRQMSV+ IEH ET+ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETCMA MAECPGHFGHLELAKPM+HIGF+KTVL+IMRCVCFNCSKILA+EDD +
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPKNRLKRIYDACKSKK C GG         D++EP KK RGGCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKK-RGGCGAQQPNIT 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            +DGMKMVAE+KAPKKK+DDQ+QLPEPVERKQ+LSAERVL+VLKRI+DEDCLLLGLNPK+A
Sbjct: 180  VDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            TEFAQLLQF+IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            REDGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDT IEKDVFMN LMWW+DFDGK+PAPAILKPRP+WTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNTLMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NLIRFSAWHSE+ETGFITPGDTMVRIEKGELLSGTLCKK++GT +GSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQ  FSIGIGDTIADAATMEKINETISKAKN+VKELIKQAQ+K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIKQAQDKH 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK EFDNV++YE+D +NW P+YMLPEHV+DLKTIREFRNVF+AEVQKLEADR+
Sbjct: 900  KLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRF 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEI TTGDN+WP+PVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960  QLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+EAF+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KPEVNKKKELAKNVQCALEYTTLRSVTHATEIW+DPDP  TIIEEDVEFVRSYYEMPDE+
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            + P+KISPWLLRIELNREMM+DKKLSMADIAEKIN EFDDDL+CIFNDDNA+KLILRIRI
Sbjct: 1200 IDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
             NDDAPKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+FD++EGF+
Sbjct: 1260 TNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVNKFDQSEGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
             D EWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1320 ADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG +MRCSFEETVDILLDAAV+AEAD
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEAD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
             LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSY+EGL+FGMTPARSPISGT
Sbjct: 1440 LLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGT 1499

Query: 329  PYHEGMMSPSYLLSPNYRASP-TTDAQFSPYVGGMAF 222
            PYHEGMMSPSYLLSPN RASP  TDA FSPYVG MAF
Sbjct: 1500 PYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536


>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Setaria italica]
          Length = 1852

 Score = 2871 bits (7442), Expect = 0.0
 Identities = 1412/1537 (91%), Positives = 1480/1537 (96%), Gaps = 1/1537 (0%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFP+SPAE+AKV+ VQFGILSPDEIRQMSV+ IEH ET+ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETCMA MAECPGHFGHLELAKPM+HIGF+KTVL+IMRCVCFNCSKILA+EDD +
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPKNRLKRIYDACKSKK C GG         D++EP KK RGGCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKK-RGGCGAQQPNIT 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            +DGMKMVAE+KAPKKK+DDQ+QLPEPVERKQ+LSAERVL+VLKRI+DEDCLLLGLNPK+A
Sbjct: 180  VDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            TEFAQLLQF+IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            REDGQRLDLRY+KKSSDQHL+LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLDLGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDT IEKDVFMNILMWW+DFDGK+PAPAILKPRP+WTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NLIRFSAWHSE+ETGFITPGDTMVRIEKGELLSGTLCKK++GT +GSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQ  FSIGIGDTIADAATMEKINETISKAKN+VKELIKQA E  
Sbjct: 660  ARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIKQAHENH 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK EFDNV++YE+D +NW P+YMLPEHV+DLKTIREFRNVF+AEVQKLEADR+
Sbjct: 900  KLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRF 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEI TTGDN+WP+PVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960  QLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+EAF+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KPEVNKKKELAKNVQCALEYTTLRSVTHATEIW+DPDP  TIIEEDVEFVRSYYEMPDE+
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            + P+KISPWLLRIELNREMM+DKKLSMADIAEKIN EFDDDL+CIFNDDNA+KLILRIRI
Sbjct: 1200 IDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
             NDDAPKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+FD++EGF+
Sbjct: 1260 TNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVNKFDQSEGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
             D EWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1320 ADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG +MRCSFEETVDILLDAAV+AEAD
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEAD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
             LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSY+EGL+FGMTPARSPISGT
Sbjct: 1440 LLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGT 1499

Query: 329  PYHEGMMSPSYLLSPNYRASP-TTDAQFSPYVGGMAF 222
            PYHEGMMSPSYLLSPN RASP  TDA FSPYVG MAF
Sbjct: 1500 PYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536


>ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
            gi|241940227|gb|EES13372.1| hypothetical protein
            SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score = 2851 bits (7391), Expect = 0.0
 Identities = 1404/1537 (91%), Positives = 1475/1537 (95%), Gaps = 1/1537 (0%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFP+SPAE+AKV  VQFGILSPDEIRQMSVV IEH ET+ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVELVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETCMA MAECPGHFGHLELAKPM+HIGF+KTVL+IMRCVCFNCSKILA+ED+ +
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPKNRLKRIYDACKSKK C GG          ++EP KK RGGCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQD-TDEPVKK-RGGCGAQQPNIT 178

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            +DGMKMVAE+KAPKKKSDDQ+QLPEPVERKQ+LSAERVL+VLKRI+DEDCLLLGLNPKYA
Sbjct: 179  VDGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYA 238

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 239  RPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 298

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            TEFAQLLQF+IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 299  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 358

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 359  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 418

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            REDGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 419  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 478

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 479  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 538

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDT IEKDVFMNILMWW+DFDGK+PAPAILKPRP+WTGKQVFNLIIPKQI
Sbjct: 539  TLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQI 598

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NLIRFSAWHSE E GFITPGDTMVRIEKGELLSGTLCKK++GT TGSLIH+IWEEVGPDA
Sbjct: 599  NLIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDA 658

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TM+ IN+TI KAK++VKELIK+A EKQ
Sbjct: 659  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMQTINDTICKAKDEVKELIKKAHEKQ 718

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 719  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 778

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 779  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 838

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 839  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 898

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK EFDN+++YE+D +NW P+YMLPEHV+DLKTIREFRNVF+AEVQKLEADRY
Sbjct: 899  KLDSLKMKKPEFDNLFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRY 958

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEIATTGDN+WP+PVNLKRLIWNAQKTF++D RRPSDMHPMEIVEAVDKLQERLKVV
Sbjct: 959  QLGTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVV 1018

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+EAF+WVIGEIESRFLQSLVAP
Sbjct: 1019 PGDDPMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1078

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1079 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1138

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KPEVN+KKELAKNVQCALEYTTLRSVTHATEIW+DPDP  TIIEED EFV+SYYEMPDE+
Sbjct: 1139 KPEVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDED 1198

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            + P+KISPWLLRIELNREMMVDKKLSMADIA+KIN EFDDDL+CIFNDDNA+KLILRIRI
Sbjct: 1199 IDPDKISPWLLRIELNREMMVDKKLSMADIADKINREFDDDLSCIFNDDNADKLILRIRI 1258

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
             ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N F ++EGF+
Sbjct: 1259 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDEGFK 1318

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
               EWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1319 AANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1378

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG +MRCSFEETVDILLDAAV+AE+D
Sbjct: 1379 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1438

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSY+EGL+FGMTPARSPISGT
Sbjct: 1439 HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGT 1498

Query: 329  PYHEGMMSPSYLLSPNYRASP-TTDAQFSPYVGGMAF 222
            PYHEGMMSPSYLLSPN RASP  TDA FSPYVG MAF
Sbjct: 1499 PYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1535


>gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
          Length = 2040

 Score = 2850 bits (7389), Expect = 0.0
 Identities = 1401/1537 (91%), Positives = 1481/1537 (96%), Gaps = 1/1537 (0%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFP+SPAE+AKV+ VQFGILSPDEIRQMSVV+IEH ET+ERGK KPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KC+TCMA MAECPGHFGHLELAKPM+HIGF+KTVL+IMRCVCFNCSKILA+EDD +
Sbjct: 61   DRKIKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPKNRL+RIYDACKSKK C GG         D++EP KK RGGCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLRRIYDACKSKKICAGGDELEVQDQQDADEPVKK-RGGCGAQQPNIT 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            +DGMKMVAE+KA KKKSDDQ+QLPEPVERKQ+LSAERVL+VLKRI+DEDCLLLGLNPK+A
Sbjct: 180  VDGMKMVAEFKATKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            TEFAQLLQF+IATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            REDGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVPAPAIL+PRP+WTGKQVFNLIIPK I
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIWTGKQVFNLIIPKLI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NLIRFSAWH+E+E+GFITPGDTMVRIEKGELLSGTLCKKT+GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETI  AKN+VKELIKQAQEK 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKN 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LE EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK+EFDNV++YE+D +NW P+YMLP+HV+DLKTIREFRNVF+AEVQKLEADR 
Sbjct: 900  KLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVFEAEVQKLEADRL 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEI TTGDNTWP+PVNLKRLIWNAQKTFK+DLRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960  QLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+E+F+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KPEV+KKKELAKNVQCALEYTTLRSVTHATEIW+DPDP  TIIEEDVEFVRSYYEMPDE+
Sbjct: 1140 KPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            + P+KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDL+CIFNDDNA+KLILR+RI
Sbjct: 1200 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
             ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+FDE+EGF+
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNKFDESEGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
            PD EWMLDTEGVNLLAVMCHEDVD+TRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG +MRCSFEETVDILLDAAV+AE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            +LRGVTENIMLGQLAPIGTGGC LYLNDQMLQQAIELQLPSY+EGL++GMTPARSP+S T
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLDYGMTPARSPMSAT 1499

Query: 329  PYHE-GMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            PY + GMMSP  +LSPN+RASP TDAQFSPYVGGMAF
Sbjct: 1500 PYRDGGMMSP--MLSPNFRASPITDAQFSPYVGGMAF 1534


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 2848 bits (7383), Expect = 0.0
 Identities = 1408/1538 (91%), Positives = 1479/1538 (96%), Gaps = 2/1538 (0%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFP+SPAE+AKVR VQFGILSP+EIR MSVV I+H ET+ERGKPKP GLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRVVQFGILSPEEIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KC+TC A+MAECPGHFGHLELAKPM+HIGFLKTVL+IMRCVCFNCS+ILA+E+D R
Sbjct: 61   DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHR 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSR-GGCGAQQPNI 4293
            FKQALKIRNPK RLK++ D CK+K KCEGG         DSEE  KK R GGCGAQQP I
Sbjct: 121  FKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKI 180

Query: 4292 TIDGMKMVAEYKAPKKKSDDQEQ-LPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPK 4116
            TI+GMKMVAEYK P+KK+D+QEQ LPEPVERKQ L+AE+VL+VLKRITDEDC LLGLNPK
Sbjct: 181  TIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPK 240

Query: 4115 YARPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 3936
            YARPDWMILQV+        PSVMMDTSSRSEDDLTHQLAM+IRHNENL+RQE+NGAPAH
Sbjct: 241  YARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAH 300

Query: 3935 IITEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 3756
            II+EFAQLLQF++ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 301  IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 360

Query: 3755 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 3576
            SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 361  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 420

Query: 3575 IIREDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 3396
            IIREDGQRLDLRYLKKS D HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 421  IIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 480

Query: 3395 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 3216
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 481  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 540

Query: 3215 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPK 3036
            QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPK
Sbjct: 541  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 600

Query: 3035 QINLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGP 2856
            QINLIR+SAWHSESE+GFITPGDT VRIE+GELLSGTLCKKT+GTS+GSLIHVIWEEVGP
Sbjct: 601  QINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGP 660

Query: 2855 DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQE 2676
            DAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADAATMEKINETISKAKN+VKELIK AQE
Sbjct: 661  DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQE 720

Query: 2675 KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 2496
            KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 721  KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 780

Query: 2495 QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 2316
            QMTACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 781  QMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 840

Query: 2315 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 2136
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE
Sbjct: 841  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 900

Query: 2135 SQKLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEAD 1956
            SQKLDSLKMK++EF+NVYKYEID +NW+PSYMLPEHVEDLKTIREF+NVFDAEVQKLEAD
Sbjct: 901  SQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEAD 960

Query: 1955 RYQLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLK 1776
            R+QLGTEI TTGDN+WP+PVNLKRLIWNAQK FKVDLRRPSDMHPMEIVEAVDKLQERLK
Sbjct: 961  RHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLK 1020

Query: 1775 VVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV 1596
            VVPGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV
Sbjct: 1021 VVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV 1080

Query: 1595 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1416
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1081 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1140

Query: 1415 YLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPD 1236
            YLK EVNK KE AKNVQCALEYTTLRSVT ATE+W+DPDP STIIEEDV+FVRSYYEMPD
Sbjct: 1141 YLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPD 1200

Query: 1235 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRI 1056
            EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDLTCIFNDDNAEKLILRI
Sbjct: 1201 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1260

Query: 1055 RIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEG 876
            RIMND+APKGELQDES+EDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKIN+FDENEG
Sbjct: 1261 RIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEG 1320

Query: 875  FRPDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVIS 696
            F+P++EWMLDTEGVNLLAVMC+E+VDATRTTSNHLIEVI+VLGIEAVRR+LLDELRVVIS
Sbjct: 1321 FKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELRVVIS 1380

Query: 695  FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAE 516
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG MMRCSFEETVDILLDAAV+AE
Sbjct: 1381 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1440

Query: 515  ADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPIS 336
            ADHLRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSYMEG++FGMTP+RSP++
Sbjct: 1441 ADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGMDFGMTPSRSPMT 1500

Query: 335  GTPYHEGMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            GTPYHEGMMSP YLLSPN R+SP TDAQFSPYVGGMAF
Sbjct: 1501 GTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537


>gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1861

 Score = 2848 bits (7382), Expect = 0.0
 Identities = 1400/1537 (91%), Positives = 1480/1537 (96%), Gaps = 1/1537 (0%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            M  RFP+SPAE+AKV+ VQFGILSPDEIRQMSVV+IEH ET+ERGK KPGGLSDPRLGTI
Sbjct: 1    MAARFPYSPAEVAKVKLVQFGILSPDEIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KC+TCMA MAECPGHFGHLELAKPM+HIGF+KTVL+IMRCVCFNCSKILA+E+D +
Sbjct: 61   DRKIKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEEDTK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPKNRL+RIYDACKSKK C GG         D++EP KK RGGCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLRRIYDACKSKKICAGGDELEVQDQQDADEPVKK-RGGCGAQQPNIT 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            +DGMKMVAE+KA KKKSDDQ+QLPEPVERKQ+LSAERVL+VLKRI+DEDCLLLGLNPKYA
Sbjct: 180  VDGMKMVAEFKATKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            TEFAQLLQF+IATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            REDGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVPAPAIL+PRP+WTGKQVFNLIIPK I
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIWTGKQVFNLIIPKLI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NLIRFSAWH+E+E+GFITPGDTMVRIEKGELLSGTLCKKT+GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETI  AKN+VKELIKQAQEK 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKN 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LE EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK+EFDNV++YE+D +NW P+YMLP+HV+DLKTIREFRNVF+AEVQKLEADR 
Sbjct: 900  KLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVFEAEVQKLEADRL 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEI TTGDNTWP+PVNLKRLIWNAQKTFK+DLRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960  QLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+E+F+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KPEV+KKKELAKNVQCALEYTTLRSVTHATEIW+DPDP  TIIEEDVEFVRSYYEMPDE+
Sbjct: 1140 KPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            + P+KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDL+CIFNDDNA+KLILR+RI
Sbjct: 1200 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
             ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+FDE+EGF+
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNKFDESEGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
            PD EWMLDTEGVNLLAVMCHEDVD+TRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG +MRCSFEETVDILLDAAV+AE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            +LRGVTENIMLGQLAPIGTGGC LYLNDQMLQQAIELQLPSY+EGL++GMTPARSP+S T
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLDYGMTPARSPMSAT 1499

Query: 329  PYHE-GMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            PY + GMMSP  +LSPN+RASP TDAQFSPYVGGMAF
Sbjct: 1500 PYRDGGMMSP--MLSPNFRASPITDAQFSPYVGGMAF 1534


>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score = 2844 bits (7372), Expect = 0.0
 Identities = 1399/1537 (91%), Positives = 1472/1537 (95%), Gaps = 1/1537 (0%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFP+SPAE+AKV  VQFGILSPDEIRQMSV+ IEH ET+ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVEFVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETCMA MAECPGHFGHLELAKPM+HIGF+KTVL+IMRCVCFNCSKILA+ED+ +
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPKNRLKRIYDACKSKK C GG          ++EP KK RGGCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQD-TDEPIKK-RGGCGAQQPNIT 178

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            +DGMKMVAE+KAPKKK+DDQ+QLPEPVERKQ+LSAERVL+VLKRI+DEDCLLLGLNPKYA
Sbjct: 179  VDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYA 238

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 239  RPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 298

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            TEFAQLLQF+IATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 299  TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 358

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 359  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 418

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            REDGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 419  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 478

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 479  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 538

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDT IEKDVFMNILMWW+DFDGK+PAP ILKPRP+WTGKQVFNLIIPKQI
Sbjct: 539  TLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPTILKPRPIWTGKQVFNLIIPKQI 598

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NLIRFSAWHSE E GFITPGDTMVRIEKGELLSGTLCKK++GT +GSLIHVIWEEVGPDA
Sbjct: 599  NLIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDA 658

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN+TISKAKN VKELIK+A EKQ
Sbjct: 659  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQ 718

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ SLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 719  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQM 778

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 779  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 838

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 839  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 898

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK EFDNV++YE+D +NW P+YMLPEHV+DLKTIREFRNVF+AEVQKLEADRY
Sbjct: 899  KLDSLKMKKPEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRY 958

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLG+EI TTGDN+WP+PVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 959  QLGSEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVV 1018

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+EAF+WVIGEIESRFLQSLVAP
Sbjct: 1019 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1078

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1079 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1138

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KP+VN+KKELAKNVQCALEYTTLRSVTHATEIW+DPDP  TIIEED EFV+SYYEMPDE+
Sbjct: 1139 KPQVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDTEFVQSYYEMPDED 1198

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            + P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFNDDNA+KLILRIRI
Sbjct: 1199 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRI 1258

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
             ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N F +++GF+
Sbjct: 1259 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDDGFK 1318

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
               EWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1319 AANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1378

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG +MRCSFEETVDILLDAAV+AE+D
Sbjct: 1379 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1438

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSY+EGL+FGMTPARSPI+GT
Sbjct: 1439 HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPITGT 1498

Query: 329  PYHEGMMSPSYLLSPNYRASP-TTDAQFSPYVGGMAF 222
            PYHEGMMSPSYLLSPN RASP  TDA FSPYVG MAF
Sbjct: 1499 PYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1535


>dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1859

 Score = 2843 bits (7371), Expect = 0.0
 Identities = 1397/1537 (90%), Positives = 1480/1537 (96%), Gaps = 1/1537 (0%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFP+SPAE+AKV+ VQFGILSPDEIRQMSVV+IEH ET+ERGK KPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KC+TCMA MAECPGHFGHLELAKPM+HIGF+KTVL+IMRCVCFNCSKILA+E++ +
Sbjct: 61   DRKIKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEEETK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPK+RL+RIYDACKSKK C GG         D++EP KK R GCGAQQPNIT
Sbjct: 121  FKQALKIRNPKHRLRRIYDACKSKKICAGGDELDVQDQQDTDEPVKK-RSGCGAQQPNIT 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            +DGMKMVAE+KA KKKSDDQ+QLPEPVERKQ+LSAERVL+VLKRI+DEDCLLLGLNPKYA
Sbjct: 180  VDGMKMVAEFKATKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLR+QERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRKQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            TEFAQLLQF+IATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            REDGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVPAPAIL+PRP+WTGKQVFNLIIPK I
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIWTGKQVFNLIIPKLI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NLIRFSAWH+E+E+GFITPGDTMVRIEKGELLSGTLCKKT+GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETI  AKN+VKELIKQAQEK 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKN 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LE EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK+EFDNV++YE+D +NW P+YMLP+HV+DLKTIREFRNVF+AEVQKLEADR 
Sbjct: 900  KLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVFEAEVQKLEADRL 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEI TTGDNTWP+PVNLKRLIWNAQKTFK+DLRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960  QLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+E+F+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KPEV+KKKELAKNVQCALEYTTLRSVTHATEIW+DPDP  TIIEEDVEFVRSYYEMPDE+
Sbjct: 1140 KPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            + P+KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDL+CIFNDDNA+KLILR+RI
Sbjct: 1200 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
             ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+FDE+EGF+
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNKFDESEGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
            PD EWMLDTEGVNLLAVMCHEDVD+TRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG +MRCSFEETVDILLDAAV+AE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            +LRGVTENIMLGQLAPIGTGGC LYLNDQMLQQAIELQLPSY+EGL++GMTPARSP+S T
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLDYGMTPARSPMSAT 1499

Query: 329  PYHE-GMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            PY + GMMSP  +LSPN+RASP TDAQFSPYVGGMAF
Sbjct: 1500 PYRDGGMMSP--MLSPNFRASPITDAQFSPYVGGMAF 1534


>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Brachypodium distachyon]
          Length = 1862

 Score = 2837 bits (7355), Expect = 0.0
 Identities = 1394/1538 (90%), Positives = 1481/1538 (96%), Gaps = 2/1538 (0%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFP+SPAE+AKV+ VQFGILSPDEIRQMSVV+IE+ ET+E+GK KPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEYAETMEKGKAKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KC+TCMA MAECPGHFGHLELAKPM+HIGF+KTVL+IMRCVCFNCSKILA+EDDA+
Sbjct: 61   DRKVKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDAK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPKN+L+RIYDACKSKK C GG         D++EP KK RGGCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNKLRRIYDACKSKKICAGGDDLEVEDQQDTDEPVKKKRGGCGAQQPNIT 180

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            +DGMKMVAE+K  KKK+DDQ+QLPEPVERKQ+LSAERVL+VLKRI+DEDCLLLGLNPK+A
Sbjct: 181  VDGMKMVAEFKQTKKKNDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 240

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 241  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 300

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            TEFAQLLQF+IATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 361  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            REDGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 421  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVPAPAILKPRP+WTGKQVFNLIIPK I
Sbjct: 541  TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKLI 600

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NLIRFSAWH+ESE+GFITPGDTMVRIEKGELLSGTLCKKT+GT TGSLIHVIWEEVGPDA
Sbjct: 601  NLIRFSAWHAESESGFITPGDTMVRIEKGELLSGTLCKKTLGTGTGSLIHVIWEEVGPDA 660

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TMEKINETISKAK++V ELIKQAQ+K 
Sbjct: 661  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKSEVTELIKQAQDKL 720

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LE EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 721  LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GF+DRTLPHFTK+DYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781  TACVGQQNVEGKRIPFGFVDRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q
Sbjct: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 900

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK+EFDNVY+YE+D +NW P+YMLPEHV+DLKTIREFRNVF+AEVQKLEADR 
Sbjct: 901  KLDSLKMKKAEFDNVYRYELDDENWRPTYMLPEHVDDLKTIREFRNVFEAEVQKLEADRL 960

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEI TTGDN+WP+PVNLKRLIWNAQKTFK+DLRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 961  QLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1020

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+E+F+WVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAP 1080

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1140

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KPEV+KKKELAKNVQCALEYTTLRSVTHATEIW+DPDP  TIIEED++FV+SYYEMPDE+
Sbjct: 1141 KPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDMDFVKSYYEMPDED 1200

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            + P+KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDL+CIFNDDNA+KLILR+RI
Sbjct: 1201 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1260

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
             ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKIN+FDEN+GF+
Sbjct: 1261 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKINKFDENDGFK 1320

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
            PD EWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1321 PDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG +MRCSFEETVDILLDAAV+AE+D
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1440

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEF-GMTPARSPISG 333
            +LRGVTENIMLGQLAPIGTGGC LYLNDQMLQQAIELQLPSY+EGLE+ GMTPAR+  SG
Sbjct: 1441 YLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLEYIGMTPARASPSG 1500

Query: 332  TPYHE-GMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            TPYH+ GMMSP  +LSPN+R+SP +DAQFSPYVGGMAF
Sbjct: 1501 TPYHDGGMMSP--MLSPNFRSSPISDAQFSPYVGGMAF 1536


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 2804 bits (7269), Expect = 0.0
 Identities = 1381/1536 (89%), Positives = 1457/1536 (94%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFP+SPAE+AKVR VQFGILSPDEIRQMSVV IEHGET ERGKPK  GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETC A+MAECPGHFGHLELAKPM+HIGF+KTVL IMR VCFNCSKIL +E+D +
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQAL+I+NPKNRL++I DACK+K KCEGG          S++P KKSRGGCGAQQP I+
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQD-SDQPVKKSRGGCGAQQPKIS 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            I+GMKM AEYKA +KK+DD EQLPEPVERKQ L+AERVL +LKRITDEDC LLGLNPKYA
Sbjct: 180  IEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            +EFAQLLQF+IATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            R+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NL R SAWHSESETG ITPGDT VRIEKGELLSGTLCKK +GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKN+VK LIK+AQE+ 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LE EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK EF+ +++YE + +NW P+YMLPEHVEDLKTIREFRNVF+AEVQKLEADRY
Sbjct: 900  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEIATTG+N+WP+PVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVV
Sbjct: 960  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PG+D LS+EAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KPE NK KE AK VQCALEYTTLRSVT ATE+W+DPDP STIIEED++FV+SYYEMPDEE
Sbjct: 1140 KPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            +APEKISPWLLRIELNREMMVDKKLSMA+IAEKIN EFDDDLTCIFNDDNAEKLILRIRI
Sbjct: 1200 IAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+N+FDENEGF+
Sbjct: 1260 MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
            P++EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG MMRCSFEETVDILLDAAV+AE D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            HLRGVTENIMLGQLAPIGTGGCALYLND+ML+ AIELQLPSY++GL+FGMTP+RSPISGT
Sbjct: 1440 HLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGT 1499

Query: 329  PYHEGMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            PYHEGMMSP+YLLSPN R SP +DAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 2804 bits (7269), Expect = 0.0
 Identities = 1381/1536 (89%), Positives = 1457/1536 (94%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFP+SPAE+AKVR VQFGILSPDEIRQMSVV IEHGET ERGKPK  GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETC A+MAECPGHFGHLELAKPM+HIGF+KTVL IMR VCFNCSKIL +E+D +
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQAL+I+NPKNRL++I DACK+K KCEGG          S++P KKSRGGCGAQQP I+
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQD-SDQPVKKSRGGCGAQQPKIS 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            I+GMKM AEYKA +KK+DD EQLPEPVERKQ L+AERVL +LKRITDEDC LLGLNPKYA
Sbjct: 180  IEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            +EFAQLLQF+IATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            R+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NL R SAWHSESETG ITPGDT VRIEKGELLSGTLCKK +GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKN+VK LIK+AQE+ 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LE EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK EF+ +++YE + +NW P+YMLPEHVEDLKTIREFRNVF+AEVQKLEADRY
Sbjct: 900  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEIATTG+N+WP+PVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVV
Sbjct: 960  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PG+D LS+EAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KPE NK KE AK VQCALEYTTLRSVT ATE+W+DPDP STIIEED++FV+SYYEMPDEE
Sbjct: 1140 KPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            +APEKISPWLLRIELNREMMVDKKLSMA+IAEKIN EFDDDLTCIFNDDNAEKLILRIRI
Sbjct: 1200 IAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+N+FDENEGF+
Sbjct: 1260 MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
            P++EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG MMRCSFEETVDILLDAAV+AE D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            HLRGVTENIMLGQLAPIGTGGCALYLND+ML+ AIELQLPSY++GL+FGMTP+RSPISGT
Sbjct: 1440 HLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGT 1499

Query: 329  PYHEGMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            PYHEGMMSP+YLLSPN R SP +DAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
            lycopersicum]
          Length = 1846

 Score = 2802 bits (7263), Expect = 0.0
 Identities = 1384/1537 (90%), Positives = 1461/1537 (95%), Gaps = 1/1537 (0%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFPFSPAE+AKVRTVQFGI+SPDEIRQMSVV IEHGET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETCMA+MAECPGHFGHLELAKPM+HIGF+K VL+I+RCVCFNCSKILA+EDD +
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQA++IRNPKNRL+++ DACK+K KCEGG          +EEP KKSRGGCGAQQP I+
Sbjct: 121  FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQD-TEEPVKKSRGGCGAQQPKIS 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            IDGMKMVAEYK  KKKSDD EQ+PEPVERKQ LSAERVLS+LKR++DEDCLLLGLNP++A
Sbjct: 180  IDGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQ L        PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHII
Sbjct: 240  RPDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            +EFAQLLQF+IATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            R+DGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NL+R+SAWH++SE G+ITPGDT VRIEKGELLSGTLCKKT+GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQ AFSIGIGDTIADA+TMEKINETIS AK  VKELIK AQEK 
Sbjct: 660  ARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKL 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LEAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE+Q
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLK KK  FD++Y YEID  NWNPSYMLPE VEDLK IRE R+VFDAEVQKLEADR+
Sbjct: 900  KLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRH 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEIA TGDN+WPLPVN++RL+ NAQKTFK+D RRPSDMHPMEIVEAVDKLQERLKVV
Sbjct: 960  QLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PGDD+LSMEAQKNATLFFNILLRS  ASKRVLKEYRL+REAF+WV+GEIESRFLQSLVAP
Sbjct: 1020 PGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KPEV K KE AK VQCALEYTTLRSVT ATE+W+DPDP ST+IEEDVEFV+SYYEMPDEE
Sbjct: 1140 KPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEE 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            + P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDLTCIFNDDNAEKLILRIRI
Sbjct: 1200 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ K+ +FD+NEGF+
Sbjct: 1260 MNDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFK 1318

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
             + EWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1319 AENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1378

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG MMRCSFEETVDILLDAAVFAE+D
Sbjct: 1379 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1438

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYME-GLEFGMTPARSPISG 333
            HLRGVTENIMLGQLAPIGTGGC+LYLN++ML+QAIE+ LPSYME GLEFGMTP RSPISG
Sbjct: 1439 HLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISG 1498

Query: 332  TPYHEGMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            TPYH+GMMSP+YLLSPN R SP TDAQFSPYVGGMAF
Sbjct: 1499 TPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max]
          Length = 1827

 Score = 2801 bits (7261), Expect = 0.0
 Identities = 1384/1536 (90%), Positives = 1459/1536 (94%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFPFSPAE+AKVR VQFGILSPDEIRQMSVV IEHGET ERGKPK GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRKLKCETC ASMAECPGHFGHLELAKPM+HIGFLKTVL IMRCVCFNCSKILA+E+D +
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQAL+IRNPKNRLK+I DACK+K KCEGG          ++EP KKSRGGCGAQQP IT
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQD-TDEPVKKSRGGCGAQQPKIT 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            I+GMKM+AEYKA +KKSDDQEQLPEPVERKQ LSAERVL VLKRI+DEDC LLGLNPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            +EFAQLLQF+IATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            R+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDTFI KDVFMNILMWWEDFDGKVPAPAILKP PLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NLIR+S+WHSESE G ITPGDTMVRIEKGELL+GTLCKKT+GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA+TME IN+TIS AK  VK+LI++AQEK+
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKK 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LEAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLKMKK+EFD V++YE D +NW P+YML E VEDLKTIREFRNVF+AEVQKLEADRY
Sbjct: 900  KLDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRY 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QL TEIATTGD++ PLPVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960  QLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PG+D LS EAQKNATL FNILLRSTFASKRVL+EYRL+REAF+WV+GEIESRFLQSLVA 
Sbjct: 1020 PGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVAS 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            + +V K KE AK+VQCALEYTTLRSVT ATE+W+DPDP STIIEED +FV+SYYEMPDEE
Sbjct: 1140 RSDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEE 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            VA EKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDLTCIFNDDNAEKLILRIRI
Sbjct: 1200 VALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
            MND+APKGE+QDESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK+ K+ +FDEN+GF+
Sbjct: 1260 MNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
            P+ EWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1320 PNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG MMRCSFEETVDILLDAAV+AE D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            +LRGVTENIMLGQLAPIGTG CALYLND+ML+ AIELQLPSYM+GL+FGMTPARSPISGT
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGT 1499

Query: 329  PYHEGMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            PYHEG+MSPSYLLSPN R SPT+DAQFSPYVGGMAF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535


>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
            tuberosum]
          Length = 1839

 Score = 2800 bits (7257), Expect = 0.0
 Identities = 1383/1537 (89%), Positives = 1460/1537 (94%), Gaps = 1/1537 (0%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MD RFPFSPAE+AKVRTVQFGI+SPDEIRQMSVV IEHGET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETCMA+MAECPGHFGHLELAKPM+HIGF+K VL+I+RCVCFNCSKILA+EDD +
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQA++IRNPKNRL+++ DACK+K KCEGG          +EEP KKSRGGCGAQQP I+
Sbjct: 121  FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHD-TEEPVKKSRGGCGAQQPKIS 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            IDGMKMVAEYK  KKKSDD EQ+PEPVERKQ LSAERVLS+LKR++DEDCLLLGLNP++A
Sbjct: 180  IDGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQ L        PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHII
Sbjct: 240  RPDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            +EFAQLLQF+IATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            R+DGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NL+R+SAWH++SE G+ITPGDT VRIEKGELLSGTLCKKT+GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQ AFSIGIGDTIADA+TMEKINETIS AK  VKELIK AQEK 
Sbjct: 660  ARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKL 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LEAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE+Q
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
            KLDSLK KK  FD++Y YEID  NWNPSYMLPE VEDLK IRE R+VFDAEVQKLEADR+
Sbjct: 900  KLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRH 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QLGTEIA TGDN+WPLPVN++RL+ NAQKTFK+D RRPSDMHPMEIVEAVDKLQERLKVV
Sbjct: 960  QLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PGDD+LSMEAQKNATLFFNILLRS  ASKRVLKEYRL+REAF+WV+GEIESRFLQSLVAP
Sbjct: 1020 PGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KPEV K KE AK VQCALEYTTLRSVT ATE+W+DPDP ST+IEEDVEFV+SYYEMPDEE
Sbjct: 1140 KPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEE 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            + P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDLTCIFNDDNAEKLILRIRI
Sbjct: 1200 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRIRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ K+ +FD+NEGF+
Sbjct: 1260 MNDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFK 1318

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
             + EWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1319 AENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1378

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG MMRCSFEETVDILLDAAVFAE+D
Sbjct: 1379 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1438

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYME-GLEFGMTPARSPISG 333
            HLRGVTENIMLGQLAPIGTG C+LYLN++ML+QAIE+ LPSYME GLEFGMTP RSPISG
Sbjct: 1439 HLRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISG 1498

Query: 332  TPYHEGMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            TPYH+GMMSP+YLLSPN R SP TDAQFSPYVGGMAF
Sbjct: 1499 TPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 2796 bits (7248), Expect = 0.0
 Identities = 1374/1536 (89%), Positives = 1456/1536 (94%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MDTRFP+SPAE+AKVR VQFGILSPDEIRQMSVV IEHGET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETC A+MAECPGHFGHLELAKPM+HIGF+KTVL+IMR VCFNCSKILA+EDD +
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPKNRLK+I DACK+K KCEGG           EEP KK++GGCGAQQP +T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD-GEEPLKKNKGGCGAQQPKLT 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            I+GMKM+AEYKA +KK+DDQEQLPEPVERKQ L+AERVL VLKRI+DEDC LLGLNPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            +EFAQLLQF+IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            R+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NL R +AWH++++ G +T GDT+VRIEKGELLSGTLCKKT+GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TISKAKN+VK LIKQAQ+K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LE EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
             LDSLKMKKSEFD  +++E+D +NWNP+YML E+++DLKTI+E R+VFDAEVQKLEADRY
Sbjct: 900  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRY 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QL TEIAT+GD++WPLPVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVV
Sbjct: 960  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PG+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KP VN  KE AKNVQCALEYTTLRSVT ATE+W+DPDP  TIIEEDVEFV+SYYEMPDE+
Sbjct: 1140 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            +APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1200 IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK  ++D+NEGF+
Sbjct: 1260 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
             + EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1320 SEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG MMRCSFEETVDILLDAAVFAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            +LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSYMEGLEFGMTPARSP+SGT
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT 1499

Query: 329  PYHEGMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            PYH+GMMSP YL SPN R SP TDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score = 2796 bits (7248), Expect = 0.0
 Identities = 1374/1536 (89%), Positives = 1456/1536 (94%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MDTRFP+SPAE+AKVR VQFGILSPDEIRQMSVV IEHGET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETC A+MAECPGHFGHLELAKPM+HIGF+KTVL+IMR VCFNCSKILA+EDD +
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPKNRLK+I DACK+K KCEGG           EEP KK++GGCGAQQP +T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD-GEEPLKKNKGGCGAQQPKLT 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            I+GMKM+AEYKA +KK+DDQEQLPEPVERKQ L+AERVL VLKRI+DEDC LLGLNPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            +EFAQLLQF+IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            R+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NL R +AWH++++ G +T GDT+VRIEKGELLSGTLCKKT+GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TISKAKN+VK LIKQAQ+K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LE EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
             LDSLKMKKSEFD  +++E+D +NWNP+YML E+++DLKTI+E R+VFDAEVQKLEADRY
Sbjct: 900  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRY 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QL TEIAT+GD++WPLPVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVV
Sbjct: 960  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PG+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KP VN  KE AKNVQCALEYTTLRSVT ATE+W+DPDP  TIIEEDVEFV+SYYEMPDE+
Sbjct: 1140 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            +APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1200 IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK  ++D+NEGF+
Sbjct: 1260 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
             + EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1320 SEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG MMRCSFEETVDILLDAAVFAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            +LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSYMEGLEFGMTPARSP+SGT
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT 1499

Query: 329  PYHEGMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            PYH+GMMSP YL SPN R SP TDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score = 2796 bits (7248), Expect = 0.0
 Identities = 1374/1536 (89%), Positives = 1456/1536 (94%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MDTRFP+SPAE+AKVR VQFGILSPDEIRQMSVV IEHGET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETC A+MAECPGHFGHLELAKPM+HIGF+KTVL+IMR VCFNCSKILA+EDD +
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPKNRLK+I DACK+K KCEGG           EEP KK++GGCGAQQP +T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD-GEEPLKKNKGGCGAQQPKLT 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            I+GMKM+AEYKA +KK+DDQEQLPEPVERKQ L+AERVL VLKRI+DEDC LLGLNPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            +EFAQLLQF+IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            R+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NL R +AWH++++ G +T GDT+VRIEKGELLSGTLCKKT+GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TISKAKN+VK LIKQAQ+K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LE EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
             LDSLKMKKSEFD  +++E+D +NWNP+YML E+++DLKTI+E R+VFDAEVQKLEADRY
Sbjct: 900  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRY 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QL TEIAT+GD++WPLPVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVV
Sbjct: 960  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PG+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KP VN  KE AKNVQCALEYTTLRSVT ATE+W+DPDP  TIIEEDVEFV+SYYEMPDE+
Sbjct: 1140 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            +APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1200 IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK  ++D+NEGF+
Sbjct: 1260 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
             + EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1320 SEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG MMRCSFEETVDILLDAAVFAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            +LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSYMEGLEFGMTPARSP+SGT
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT 1499

Query: 329  PYHEGMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            PYH+GMMSP YL SPN R SP TDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Citrus sinensis] gi|568825318|ref|XP_006467028.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1-like
            isoform X2 [Citrus sinensis]
          Length = 1860

 Score = 2796 bits (7248), Expect = 0.0
 Identities = 1374/1536 (89%), Positives = 1456/1536 (94%)
 Frame = -2

Query: 4829 MDTRFPFSPAEIAKVRTVQFGILSPDEIRQMSVVMIEHGETLERGKPKPGGLSDPRLGTI 4650
            MDTRFP+SPAE+AKVR VQFGILSPDEIRQMSVV IEHGET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKLKCETCMASMAECPGHFGHLELAKPMYHIGFLKTVLAIMRCVCFNCSKILANEDDAR 4470
            DRK+KCETC A+MAECPGHFGHLELAKPM+HIGF+KTVL+IMR VCFNCSKILA+EDD +
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 4469 FKQALKIRNPKNRLKRIYDACKSKKKCEGGXXXXXXXXXDSEEPTKKSRGGCGAQQPNIT 4290
            FKQALKIRNPKNRLK+I DACK+K KCEGG           EEP KK++GGCGAQQP +T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD-GEEPLKKNKGGCGAQQPKLT 179

Query: 4289 IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRITDEDCLLLGLNPKYA 4110
            I+GMKM+AEYKA +KK+DDQEQLPEPVERKQ L+AERVL VLKRI+DEDC LLGLNPKYA
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 4109 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 3930
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 3929 TEFAQLLQFYIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3750
            +EFAQLLQF+IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3749 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3570
            RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3569 REDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3390
            R+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3389 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3210
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3209 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3030
            TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 599

Query: 3029 NLIRFSAWHSESETGFITPGDTMVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDA 2850
            NL R +AWH++++ G +T GDT+VRIEKGELLSGTLCKKT+GTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 2849 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKQAQEKQ 2670
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TISKAKN+VK LIKQAQ+K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 719

Query: 2669 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2490
            LE EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2489 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2310
            TACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2309 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2130
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 899

Query: 2129 KLDSLKMKKSEFDNVYKYEIDSDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY 1950
             LDSLKMKKSEFD  +++E+D +NWNP+YML E+++DLKTI+E R+VFDAEVQKLEADRY
Sbjct: 900  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRY 959

Query: 1949 QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1770
            QL TEIAT+GD++WPLPVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVV
Sbjct: 960  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1019

Query: 1769 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 1590
            PG+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1589 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1410
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1409 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWFDPDPTSTIIEEDVEFVRSYYEMPDEE 1230
            KP VN  KE AKNVQCALEYTTLRSVT ATE+W+DPDP  TIIEEDVEFV+SYYEMPDE+
Sbjct: 1140 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1199

Query: 1229 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI 1050
            +APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1200 IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1259

Query: 1049 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFR 870
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK  ++D+NEGF+
Sbjct: 1260 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFK 1319

Query: 869  PDVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 690
             + EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1320 SEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1379

Query: 689  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTMMRCSFEETVDILLDAAVFAEAD 510
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG MMRCSFEETVDILLDAAVFAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1439

Query: 509  HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLEFGMTPARSPISGT 330
            +LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSYMEGLEFGMTPARSP+SGT
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT 1499

Query: 329  PYHEGMMSPSYLLSPNYRASPTTDAQFSPYVGGMAF 222
            PYH+GMMSP YL SPN R SP TDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535