BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00000112
         (7359 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMT23234.1| DNA-directed RNA polymerase II subunit RPB1-B [Ae...  1562   0.0  
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative...  1550   0.0  
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...  1503   0.0  
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1501   0.0  
ref|XP_004951807.1| PREDICTED: DNA-directed RNA polymerase E sub...  1498   0.0  
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...  1462   0.0  
gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo...  1462   0.0  
ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V sub...  1458   0.0  
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...  1454   0.0  
ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E sub...  1454   0.0  
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...  1452   0.0  
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...  1452   0.0  
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...  1447   0.0  
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...  1445   0.0  
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...  1445   0.0  
gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative...  1438   0.0  
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus...  1431   0.0  
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe...  1422   0.0  
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...  1411   0.0  
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1409   0.0  

>gb|EMT23234.1| DNA-directed RNA polymerase II subunit RPB1-B [Aegilops tauschii]
          Length = 2017

 Score = 1562 bits (4045), Expect = 0.0
 Identities = 841/1857 (45%), Positives = 1154/1857 (62%), Gaps = 179/1857 (9%)
 Frame = +1

Query: 1837 EDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCESC 2016
            E++  + LV +G I+SIK SL+T EEICTYSIND PV+HPSQL NPFLGLPLE+GKCESC
Sbjct: 47   EEDQSAVLVAEGAIKSIKLSLSTEEEICTYSINDCPVTHPSQLGNPFLGLPLETGKCESC 106

Query: 2017 GTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKIGSSQAKETLSY 2196
            G  E  KCEGHFG+I+LP PVYHP H++EL+ +L++VCL C+R+KK K+     KE +S 
Sbjct: 107  GATENGKCEGHFGFIELPVPVYHPCHVSELRQLLSMVCLMCLRIKKGKVKQKNGKENVSV 166

Query: 2197 SSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFG-FHHGD-NMCQS 2370
            ++C YCR L  + +KE+KT DGAF LEL    +  + +  W+FL+K+G FHHG  + C++
Sbjct: 167  TACHYCRGLPALYLKEIKTEDGAFRLELRAPPKKHMTERSWDFLNKYGEFHHGGASHCRT 226

Query: 2371 LLPSESL--------------------------------------------------KIL 2400
            LLP E L                                                   IL
Sbjct: 227  LLPVELLWTVKIQIHPLSLGRTMLFETFRKISRIGDVCTRGVPYMAKAFGDMTLRAFNIL 286

Query: 2401 QKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXXXXXXLLKRVLC 2580
            +KIP++TKK+LA +G+  Q G++++Y+PVPPNCLY+PE               LLK++L 
Sbjct: 287  KKIPDDTKKKLAARGFIAQPGYVMKYLPVPPNCLYIPEFTDGQSIMSYDISISLLKKILQ 346

Query: 2581 NIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPHASRKFIVGTEATDCSAK 2760
             IE IKKSRSG+PNF SH+ ES  LQ SI +Y++LRGTTK P  +++F V T+++  S K
Sbjct: 347  KIEQIKKSRSGSPNFESHDSESADLQLSIGQYIQLRGTTKGPQDAKRFAVSTDSSHLSTK 406

Query: 2761 QWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDRVTEFNMDRLQE 2940
            QW EKMKTLFISKGSGFSSRSV+TGD Y G + +G+P E+AKR+TFE++VT+ N++RLQE
Sbjct: 407  QWLEKMKTLFISKGSGFSSRSVLTGDPYIGADVVGLPSEVAKRITFEEQVTDININRLQE 466

Query: 2941 LVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINRPPSTHKHSLQA 3120
            +VDK LCLTY+DG T YAI+VGSKG+T LKVGQ I+R+I+DGD+VF+NRPPSTHKHSLQA
Sbjct: 467  VVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQA 526

Query: 3121 FSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFSVEKQLLSSHNK 3300
            F+VY+HDDHTVKINPL+C+PL ADFDGDC+H++YPQSLAAKAE +ELFSVEKQL +SHN 
Sbjct: 527  FTVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTNSHNG 586

Query: 3301 NLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRNSGPFWTISQLL 3480
             +NLQ  NDSLLALK     T L++  A QL+M LS  LP PA+ KS+   P WTI+Q++
Sbjct: 587  KVNLQLANDSLLALKHMSSRTMLSKESANQLAMLLSLSLPPPAVVKSK---PCWTIAQIM 643

Query: 3481 QSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGPKEAIQFFNLLQ 3660
            QS LP  + C G++ L+R   +++ D +++++               GP +A++F N LQ
Sbjct: 644  QSALPAELTCEGDRFLVRDSTVIKLDIDKESVQASFSDLVSSILAVKGPGDALKFLNALQ 703

Query: 3661 PLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNELVDVQVDNHLR 3840
            PLLME L LDGFSV+L+DFSVPK ++E+ +  +++   VL Q R + ++ V+ +VDN+L+
Sbjct: 704  PLLMEFLLLDGFSVSLQDFSVPKPLLEEAQECIKKQSLVLEQSRCSSSQSVETRVDNNLK 763

Query: 3841 TIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLYSKALVEDIFSH 4020
             +K  +  F++K S LG LID KS+SS++KV              GK YS+ LV+D FS 
Sbjct: 764  DVKQQIADFVVKSSRLGLLIDPKSDSSVSKVVQQLAFVGPQLYREGKFYSRRLVDDCFSS 823

Query: 4021 YVTKY-------SNGAEAYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXXXGLTEPGTLF 4179
            +V ++        +  EAYGLV+S++FHGLN +EEL+H             GLTEPGTLF
Sbjct: 824  FVNRHPPIEDGVQHPPEAYGLVQSAYFHGLNPYEELVHSICTRETIVRSSRGLTEPGTLF 883

Query: 4180 KYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPVGVLAATAISNP 4359
            K LMAILRDVVICYDGTVRN+CSNSI+Q +Y    + +       GEPVGVLAATAISNP
Sbjct: 884  KSLMAILRDVVICYDGTVRNICSNSIMQLKYKEEDDTDFPSAIAPGEPVGVLAATAISNP 943

Query: 4360 AYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKNFCKENAAFTV 4539
            AYK VLDSSQ+ N+SWELMKEIL ++V+YKN   DR+V+L+LNDC C K FCKE AA  V
Sbjct: 944  AYKTVLDSSQSNNTSWELMKEILKTKVSYKNDAKDRKVILFLNDCSCPKKFCKEKAAIAV 1003

Query: 4540 QNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVLNKSTEEIVRK 4719
            Q  LKR+TL +CA D  IEY+K ++    SE     VGHIHL+K  L+ +N ST+EI++K
Sbjct: 1004 QGCLKRVTLEDCATDICIEYKKQVSLDAISEATPAFVGHIHLEKAHLEKINVSTDEILQK 1063

Query: 4720 CKDVISGYCKKKGHLSKVMERIHLSASECCSSEDHHGISSQLPCVQFTYLNE----TEDF 4887
            C++V   +  KKG L  + ++I  S  +C  ++       ++PC+QF++  +    ++  
Sbjct: 1064 CQEVSGKHANKKGTLGHLFKKITFSTCDCSFAQKPG--DGKVPCLQFSFSEDIPMLSDSV 1121

Query: 4888 EKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGEIALEVVIE 5067
            EK ++ +A+ +C +LL+ ++KGD RV  A I WVG+D+ SWV+++    KGE A+E+++E
Sbjct: 1122 EKAVNVLADSLCGVLLEIIIKGDPRVQEAKITWVGSDATSWVKHTKKISKGEPAVEIIVE 1181

Query: 5068 KNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSVQRLSTSIR 5247
            K    +NGDAW+   DAC+PV++L+D++RSIPYGIQQ++ELLGISC+FDQ VQRLS +++
Sbjct: 1182 KKEAMQNGDAWRIAMDACIPVMNLIDTQRSIPYGIQQVRELLGISCSFDQVVQRLSKTMK 1241

Query: 5248 AVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLTPMKCFETA 5427
             VAKG+LK+HL+LVANSMTCTG+L GF+ GG++A FRSLKVQVPFTEATLLTPMKCFE A
Sbjct: 1242 TVAKGILKDHLVLVANSMTCTGNLNGFHNGGYRATFRSLKVQVPFTEATLLTPMKCFEKA 1301

Query: 5428 AEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEFLDMVRITS 5607
            AEK HSD LGS+VSSCSWGKH A+GTG++FQILW+  Q+ +N+  G  +Y+FL +VR   
Sbjct: 1302 AEKCHSDSLGSVVSSCSWGKHAALGTGSSFQILWNENQLKSNKEYGDGLYDFLALVRT-- 1359

Query: 5608 GEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVERAYADKRSFEN 5787
             + E     F  DVD L        +CLSPE +       TF+D+ + +    D  S+EN
Sbjct: 1360 -DQEKAAYTFLDDVDYLVEDNAMDDICLSPEMD-GTHGMPTFEDDPEQQNTEKDS-SWEN 1416

Query: 5788 -------WE------GTKSRWEGITSSKCDIGSSQGW------EKLDKSASPVHKPGIWS 5910
                   WE           W G ++ + D     GW      +K   S  P  +P  W+
Sbjct: 1417 GTTAGASWERNANAGNDSGNWGGGSTVENDSTDWAGWGTGPANDKKIVSGEPA-EPDTWA 1475

Query: 5911 ----------SWD-----VDKVQQQPIESSK--------LEVERDGFCTWDSVRVKKADC 6021
                       W+      D    +P E  K        +E +  G+  W +   K  + 
Sbjct: 1476 DQGAKKDTEGGWNNAAAAADTGAAKPAEQDKSCWNAPPAVENDSSGWGGWGTGNAKDKNI 1535

Query: 6022 L---SGQSDAWNEFVTDRNVD----RPEKLLVWDAKPTSSPTKHISDDSSFSKLD----- 6165
                S + D W +    R+ D      +K+ V D         H+   +  ++ D     
Sbjct: 1536 ASEGSAEVDTWADQSGKRDTDGGGANWDKMKVKDHNMQQDQWGHVPSQNVDAQDDPWGSV 1595

Query: 6166 AGAHESFNAAD---SLKSFGDTSKKPEKGAWASIEMQDG-WAQRGVKGHERPLNIERWKE 6333
            AG  +   A        S+G  + K +      ++  +G W     K        E W  
Sbjct: 1596 AGVAQPSTAKHIDAQNDSWGSVAAKAQTSTAEPMDAGNGSWGSVAAKAQTYTAQQESW-G 1654

Query: 6334 NRANDPRDQGWR----SQGWGSSNSADPASHKNHSSRSPVT---------ADDWKG---- 6462
            N +  P D  W     SQG  +S++  P S     S +PV+          D W G    
Sbjct: 1655 NVSASPSDNAWGAAPVSQGPDNSDAKQPDSWDGWGSAAPVSQGDNSDAKQPDSWDGWGSA 1714

Query: 6463 ---------WNTNKTFNFKGRRSESFTPEE------------------------------ 6525
                     W TN + N KG +S+ +  +E                              
Sbjct: 1715 QADDSSTDKWKTNASGNNKGWKSDGWEAKENRRDQRDNPGRPPIRPPVERPPRPRYELPA 1774

Query: 6526 --EKILVDVEPIMHSLRKILHDSSDGSRLSPEDQSFIMENVFKHHPDKQAKVTNRIDYIM 6699
              +K+L ++EPI+  +RKI  +SSDG RL  ED+ FI+E V +HHP+K+ KV+  ID+IM
Sbjct: 1775 EAKKVLQEIEPIVTMVRKIFRESSDGIRLPLEDEKFIIEKVLEHHPEKEKKVSGEIDHIM 1834

Query: 6700 VDKHESFKDSRCFYVVSCDGSSADFSYLKCMENFVKENYPEHAESFNKKYFRRRRAE 6870
            V+KH  F+DSRCFYVVS DG+  DFSY+KCM+N+V++N+ EHAE   + +F++R  +
Sbjct: 1835 VNKHHVFQDSRCFYVVSSDGTQTDFSYIKCMDNYVRKNHEEHAELICEMHFKKRNRD 1891


>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score = 1550 bits (4013), Expect = 0.0
 Identities = 850/1786 (47%), Positives = 1137/1786 (63%), Gaps = 109/1786 (6%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            ME+N  +  V DG I  I F LAT  EI T SI+  P++H SQL+N +LGLPLE GKC +
Sbjct: 1    MEENSSASTV-DGEIVGIGFCLATPREIFTASISGFPINHVSQLSNSYLGLPLEFGKCNA 59

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMK-KLKIGSSQAKETL 2190
            CGT+E  KCEGHFGYI+LP P+YHP HI+ELK +L+L+CLKC+RMK K +I S    + L
Sbjct: 60   CGTSEPGKCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLRMKNKFQIKSGSISDRL 119

Query: 2191 SYSSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNM-CQ 2367
              +SC  C +   ++IKEVKT+DGA  LEL   SR       W FL+K+GF +GD+   +
Sbjct: 120  -LASC--CENAPQVSIKEVKTTDGACSLELKQPSRQARTS--WEFLEKYGFRYGDHHNTR 174

Query: 2368 SLLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXX 2547
            +LLP E ++IL++IP ET+++L+GKG+FPQ+G+IL+Y+PVPPNCL VP+           
Sbjct: 175  TLLPCEVMEILKRIPAETRRKLSGKGFFPQEGYILRYLPVPPNCLSVPDISDGVSIMSSD 234

Query: 2548 XXXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVP-HASRKF 2724
                +LK+VL  +E IK SRSG PNF SHEVE+  LQ+++ +Y+++RGT K   +   ++
Sbjct: 235  LSTAMLKKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRNIDARY 294

Query: 2725 IVGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFED 2904
             +  +A+D S K W EKM+TLFI KGSGFSSR VITGD Y+ +NEIGIP EIA+R+TFE+
Sbjct: 295  GISKDASDSSTKAWLEKMRTLFIRKGSGFSSRGVITGDPYKKVNEIGIPSEIAQRITFEE 354

Query: 2905 RVTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFIN 3084
            RV   NM  LQ LVD +LCLTY+DG + Y++  GSKGHT+L+ GQ+++R+IMDGDIVFIN
Sbjct: 355  RVNMHNMRYLQNLVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFIN 414

Query: 3085 RPPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELF 3264
            RPP+THKHSLQA SVYVHDDHTVKINPL+C PL ADFDGDCIHLFYPQSLAAKAEV ELF
Sbjct: 415  RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELF 474

Query: 3265 SVEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSR 3444
            SVEKQLLSSHN NLNLQ   DSLL+L+V  +T    +A AQQLSMFLSS LPQPA  K  
Sbjct: 475  SVEKQLLSSHNGNLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGN 534

Query: 3445 NSGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNG 3624
            + GP WT  Q+LQ+  P  +DC G+++LI + +IL  DF+RD +               G
Sbjct: 535  SFGPCWTALQILQTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKG 594

Query: 3625 PKEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYN 3804
            PKE + FF+ LQPLLME +F +GFSV+L DFSV ++V+++++  +Q+I  +L QLR TYN
Sbjct: 595  PKEVLNFFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYN 654

Query: 3805 ELVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKL 3984
            ELV +Q++NH+R  K P+ +FIL  SALGDLID+KS+S++ KV            ++GK 
Sbjct: 655  ELVGLQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKF 714

Query: 3985 YSKALVEDIFSHYVTKY-SNGAE----AYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXX 4149
            YSK LVED+   + + Y S+G +     +GL+KS FFHGL+ +E ++H            
Sbjct: 715  YSKTLVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSS 774

Query: 4150 XGLTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPVG 4329
             GL+EPGTLFK LMAILRDVVICYDGTVRN+ SNSI+QF+Y  N         PAGEPVG
Sbjct: 775  RGLSEPGTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYGLN--ARTKPQFPAGEPVG 832

Query: 4330 VLAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKN 4509
            VLAATA+SNPAYKAVLDS+ ++NSSWELMKEILL +V+ KN   DRRV+LYL DC CG+ 
Sbjct: 833  VLAATAMSNPAYKAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRK 892

Query: 4510 FCKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVL 4689
            +C+ENAA+ V+N+L+++ L++ AV+   EY++  T    SE+ +GLVGHI L+K  L+ L
Sbjct: 893  YCQENAAYLVKNHLRKVKLKDTAVELIFEYKQQQTV---SESEAGLVGHILLNKAVLKEL 949

Query: 4690 NKSTEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDHHGIS-SQLPCVQFTY 4866
            N S +E+  KC++ I  + KKK   +   +R  L  SECCS +   G     + C+ F  
Sbjct: 950  NISMQEVHMKCQETIISFRKKK-KTADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFC 1008

Query: 4867 LNETED-FEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGE 5043
             N  +D  + T+  + ++I P+LL+TV+KGD R+ SANIIWV  D+ +W+R+   T KGE
Sbjct: 1009 RNTKDDHLDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGE 1068

Query: 5044 IALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSV 5223
            +AL+VV+EK+AV++NGDAW+T+ D CLPV++L+D++RSIPY I+Q+QELLGISCAF+Q+V
Sbjct: 1069 LALDVVLEKSAVKQNGDAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAV 1128

Query: 5224 QRLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLT 5403
            QRLSTS+  VA+GVLKEHLIL+ANSMTC G+L+GFN GG+KAL RSL +QVPF+EATL T
Sbjct: 1129 QRLSTSVSMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFT 1188

Query: 5404 PMKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEF 5583
            P KCFE AAEK H D L SIV+SCSWGKHVAVGTG+ F +LWD +++  ++  G DVY F
Sbjct: 1189 PRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNF 1248

Query: 5584 LDMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVERAY 5763
            L M+   SG    T  C G +VDDL          LSPE +    D   F+D    E   
Sbjct: 1249 LHMLSSASGPSSTT-TCLGEEVDDLMDVDNMAEWSLSPEHSNGL-DKPVFEDAADFENDL 1306

Query: 5764 ADKRSFENWE-----------GTKSRWE-----------GITSSK-----CDIGSSQG-W 5859
              + +  +WE              S W             +TS+      CD G+S+   
Sbjct: 1307 DFQPAESSWEKGVSLDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQSDWCDWGTSKSKT 1366

Query: 5860 EKLDKSASPVHKPGIWSSWDVDKVQQQPIESSKL-EVERDGFCTWDSVR-----VKKADC 6021
            +    +A+   K   W  W   K + Q + ++     E++ +C W + +     V  A  
Sbjct: 1367 QDAAAAATSTTKKTEWCDWGTSKSKTQEVAATVTGTAEQNEWCDWRTSKSKIQVVAAAVT 1426

Query: 6022 LSGQSDAWNEFVTDRNVDRPEKLLVWDAKPT--------SSPTKHIS------------- 6138
             + +   W ++ T ++  +     V     T         S T+ +S             
Sbjct: 1427 STTKQSEWGDWGTSKSKTQDVAAAVTGTMETEWGDWGKGKSKTQDVSPKVDGTCVNEQTK 1486

Query: 6139 --------DDSSFSKLDAGAHESFNAADSLKSFGDTSKKPEKGAWASIEMQDGWAQRGV- 6291
                    +D+    ++    +S N AD+  S+G   K+ EK          GW  + V 
Sbjct: 1487 LSDWGLKKNDTQDVSMEEKTFKS-NGADTGTSWGTMGKESEKPDANDALPWSGWGTQDVI 1545

Query: 6292 --KGHERPLNIERWKENRANDPRDQGW----------RSQGW------------------ 6381
              K  +       W++ ++ +   QGW           S GW                  
Sbjct: 1546 PTKTLDDSSKSSGWEQQKSPE-CSQGWGSLDESNQPASSNGWDTPNGLGSTQSEKQHQWG 1604

Query: 6382 ---GSSNSADPASHKNHSSRSPVTADDWKGWNTNKTFNFKGRRSESFTPEEEKILVDVEP 6552
               GS   A  AS KNH  +S    +D    +    +    +R + FT EE+ IL DVEP
Sbjct: 1605 QSRGSRRWASDASKKNHPVKSARVMND--DSSMAAMYTATRQRLDMFTSEEQDILSDVEP 1662

Query: 6553 IMHSLRKILHDS--SDGSRLSPEDQSFIMENVFKHHPDKQAKVTNRIDYIMVDKHESFKD 6726
            +M S+RKI+H S  +DG  LS  DQSFI+ENVF HHPDK  K+   +DY+MV KH +F D
Sbjct: 1663 LMQSIRKIMHQSGYNDGDPLSALDQSFILENVFTHHPDKAIKMGAGVDYVMVSKHSNFPD 1722

Query: 6727 SRCFYVVSCDGSSADFSYLKCMENFVKENYPEHAESFNKKYFRRRR 6864
            SRCFYVVS DG   DFSY KC++NF+K  YP+ A+ F  KYFR+ R
Sbjct: 1723 SRCFYVVSTDGRKQDFSYRKCLDNFIKGKYPDMADVFIAKYFRKPR 1768


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 1503 bits (3891), Expect = 0.0
 Identities = 794/1571 (50%), Positives = 1046/1571 (66%), Gaps = 30/1571 (1%)
 Frame = +1

Query: 1852 SQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCESCGTAEQ 2031
            S  +LDG I  I+F LAT +EIC  S++D P+SH SQLTNPFLGLPLE GKCESCGTAE 
Sbjct: 5    SSTILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESCGTAEP 64

Query: 2032 EKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKIGSSQAKETLSYSSCLY 2211
             +CEGHFGYI+LP P+YHP H++ELK +L+L+CLKC++++K K+ ++   E L  + C  
Sbjct: 65   GQCEGHFGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKVTNNGITEQL-LAPC-- 121

Query: 2212 CRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNMCQSLLPSESL 2391
            C+D   ++++E + ++GA  LEL + SRS+  DGFW+FL ++G+ +G N+ + LLPSE +
Sbjct: 122  CQDSPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLPSEVM 181

Query: 2392 KILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXXXXXXLLKR 2571
            +IL++IPE+T+K+L  KGYFPQDG+ILQY+PVPPNCL VP+               +LK+
Sbjct: 182  EILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSMLKK 241

Query: 2572 VLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPHA-SRKFIVGTEATD 2748
            VL  IE IK SRSG PNF SH++E+  LQ+SI +Y+ +RGT K   +   +F    E  +
Sbjct: 242  VLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEPNE 301

Query: 2749 CSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDRVTEFNMD 2928
             S K W EKM+TLFI KGSGFSSRSVITGDAY+ +NEIG+P EIA+R+TFE+RV   NM 
Sbjct: 302  SSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHNMK 361

Query: 2929 RLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINRPPSTHKH 3108
             LQ LVD++LCLTY+DGL+ Y++  GSKGHT+L+ GQ+++R+IMDGDIVFINRPP+THKH
Sbjct: 362  HLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKH 421

Query: 3109 SLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFSVEKQLLS 3288
            SLQA SVYVHDDHTVKINPL+C PL ADFDGDC+HLFYPQSL AKAEV+ELFSVEKQLLS
Sbjct: 422  SLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLS 481

Query: 3289 SHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRNSGPFWTI 3468
            SH+ NLNLQ   DSLL+LKV F   FLN+A AQQL MF+S  LP+PAL KS  SGP WT 
Sbjct: 482  SHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTA 541

Query: 3469 SQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGPKEAIQFF 3648
             Q+LQ+ LP   DC GE+H I +  IL+ D+NRD L               GP E ++FF
Sbjct: 542  LQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFF 601

Query: 3649 NLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNELVDVQVD 3828
            + LQPLLME LF +GFSV+L DFS+P +V ++++ +V++I  +L  LR  YNEL+ +Q +
Sbjct: 602  DSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAE 661

Query: 3829 NHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLYSKALVED 4008
            NHLR  KVP+ +FIL  SALG+LID+KS+S+I KV            ++GK YS+ LVE 
Sbjct: 662  NHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEG 721

Query: 4009 IFSHYVTKYS-NGAE----AYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXXXGLTEPGT 4173
            +   + +KY  +GA+     +GL++S FFHGL+ +EE++H             GL+EPGT
Sbjct: 722  MAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGT 781

Query: 4174 LFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPVGVLAATAIS 4353
            LFK LMAILRDVVICYDGTVRNVCSNSI+QFEY            PAGEPVGVLAATA+S
Sbjct: 782  LFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMS 841

Query: 4354 NPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKNFCKENAAF 4533
            NPAYKAVLDSS ++NSSWELMKEILL +VN+KN   DRRV+LYLNDC CG+ +C+ENAA+
Sbjct: 842  NPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAY 901

Query: 4534 TVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVLNKSTEEIV 4713
             V+N LK+ +L++ AV+F IEY K       SE  +GLVGHIHL+K+ LQ LN S +E+ 
Sbjct: 902  LVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVC 961

Query: 4714 RKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDH-HGISSQLPCVQFTYL-NETEDF 4887
            +KC++ I+ + KKK ++    ++I LS  ECC+ +       S +PC+ F +  N  ++ 
Sbjct: 962  QKCEETINSFRKKK-NVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNL 1020

Query: 4888 EKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGEIALEVVIE 5067
            E+ +H +A+ ICP+LL T++KGD RV + NIIW+  D+ +W+RN C + KGE+AL++V+E
Sbjct: 1021 EQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLE 1080

Query: 5068 KNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSVQRLSTSIR 5247
            K AV++ GDAW+ + DACLPVLHL+D+RRSIPY I+Q+QELLGISCAFDQ+VQRLS S+ 
Sbjct: 1081 KAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVT 1140

Query: 5248 AVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLTPMKCFETA 5427
             VAKGVLKEHLIL+ANSMTC G+L+GFN GG+KAL R+L +QVPFTEATL TP KCFE A
Sbjct: 1141 MVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKA 1200

Query: 5428 AEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEFLDMVRITS 5607
            +EK H+D L SIV+SCSWGKHV VGTG+ F +LWD ++I   +  G D+Y FL +VR  S
Sbjct: 1201 SEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGS 1260

Query: 5608 GEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVERAYADKRSFEN 5787
               E   AC G +V+DL        + +SPE +  FE           +  + D   F+N
Sbjct: 1261 YGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFE-----------KPVFEDSAEFQN 1309

Query: 5788 WEGTKSRWEGITSSKCDIGSSQGW---EKLDKSASPVHKPGIWSSWDVDKVQQQPIESSK 5958
                   WE         GS   W   +  + +AS + KP  WSSW  DKV  +   S++
Sbjct: 1310 ------TWENHVP-----GSGGDWAVNQNKETTASTL-KPSAWSSWGTDKVTMKDTFSTR 1357

Query: 5959 LEVERDGFCTWDSVRVKKADCLSGQSDAWNEFVTD--RNVDRPEKLLVWDAKP---TSSP 6123
               E      WD       D    Q+ A+     D  R+  R E     D +P   +S+ 
Sbjct: 1358 EPDESSRSAGWDDKGTWGTD--KAQNTAFRRTHEDSPRSSGRDETFR--DGRPQFASSAW 1413

Query: 6124 TKHI--SDDSSFSKLDA-----GAHESFN-------AADSLKSFGDTSKKPEKGAWASIE 6261
             K I  +D + ++K D         ES++          +  ++G  S     G W   E
Sbjct: 1414 GKKIDEADKTGWNKNDGKPQMDKLRESYDWDCKVAQEKTTQSTYGGISS--TTGDWKKNE 1471

Query: 6262 MQDGWAQRGVKGHERPLNIERWKENRANDPRDQGWRSQGWGSSNSADPASHKNHSSRSPV 6441
            +Q       V+  E P+N   W  N   DP  Q   S GW SS   D    K  S     
Sbjct: 1472 LQ----MEVVQHDESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQ 1527

Query: 6442 TADDWKGWNTN 6474
                 K W+++
Sbjct: 1528 RDPAIKSWSSS 1538



 Score =  179 bits (454), Expect = 2e-41
 Identities = 121/367 (32%), Positives = 194/367 (52%), Gaps = 10/367 (2%)
 Frame = +1

Query: 5797 TKSRWEGITSSKCDIGSSQ-GWEKLDKSASPVHKPGIWSSWDVDKVQQQPIESSKLEVER 5973
            T+S + GI+S+  D   ++   E +    SPV++     SWD + + + P+  +   V  
Sbjct: 1453 TQSTYGGISSTTGDWKKNELQMEVVQHDESPVNE----HSWDAN-LPEDPLAQATTSVGW 1507

Query: 5974 DGFCTWDSVRVKKADCLSGQSD----AWNEF--VTDRNVDRPEKLLVWDAKPTSSPTKHI 6135
            D     D  + K       Q D    +W+    V     ++P     WD+ P +     +
Sbjct: 1508 DSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHNVMKEQSNQPASTHGWDS-PGAKGWNDV 1566

Query: 6136 SDDSSFSKLDAGAHESFNAADSLKSFGDTSKKPEKGAWASIEMQDGWAQRGV-KGHERPL 6312
             + S +++   G+    + ++S   +G ++++ +      +    GW       GHE   
Sbjct: 1567 EEQSQWNQ--RGSAVKNDQSESSHGWGPSNEQNQ------LPSSQGWGSPNAGAGHESET 1618

Query: 6313 NIERWKENRANDPRDQGWRSQGWGSSNSADPASHKNHSSRSPVTADDWKGWNTNKTFNFK 6492
               +W +      R +G  S+GWGS+N+ +  + KN  ++     +D   ++    F   
Sbjct: 1619 Q-SQWGQPSGKKSRPEG--SRGWGSNNT-EWKNKKNRPNKPQGPLND--DYSAGGIFTAT 1672

Query: 6493 GRRSESFTPEEEKILVDVEPIMHSLRKILHDS--SDGSRLSPEDQSFIMENVFKHHPDKQ 6666
             +R + FT EE+ IL+DVEPIM S+R+I+H +  +DG  LS +DQS+I++ VF +HPDK 
Sbjct: 1673 RQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKA 1732

Query: 6667 AKVTNRIDYIMVDKHESFKDSRCFYVVSCDGSSADFSYLKCMENFVKENYPEHAESFNKK 6846
             K+   IDY+MV +H SF +SRCFYVVS DG   DFSY KC+ENF+KE YP++AE+F  K
Sbjct: 1733 VKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGK 1792

Query: 6847 YFRRRRA 6867
            YFRR RA
Sbjct: 1793 YFRRPRA 1799


>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1 [Solanum lycopersicum]
          Length = 1632

 Score = 1501 bits (3886), Expect = 0.0
 Identities = 808/1696 (47%), Positives = 1100/1696 (64%), Gaps = 21/1696 (1%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            ME+   S  V DG ++ IKF LAT +EIC  SI+D P++HPS L NPFLGLPLE+G+CES
Sbjct: 1    MEEKSLSSKVSDGIVKRIKFGLATPQEICKSSISDCPITHPSLLLNPFLGLPLEAGRCES 60

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKIGSSQAKETLS 2193
            CGTAE  +CEGHFGYI+LP P+YHP H++ELK +L+L+CLKC++MK  K+ ++   E + 
Sbjct: 61   CGTAEPGQCEGHFGYIELPIPIYHPDHVSELKKMLSLLCLKCLKMKNRKVKNAGVLERM- 119

Query: 2194 YSSCLYCRDLQPIAIKEVKTSDGAFCLELHV-SSRSKLYDGFWNFLDKFGFHHGDNMCQS 2370
             SSC  C D+  +++ E KTSDGA  LEL V  + +KL +  WNFL+K+G+ +GD   + 
Sbjct: 120  LSSC--CEDVSQVSVYEGKTSDGASYLELKVPKNAAKLQE--WNFLEKYGYRYGDGYSRP 175

Query: 2371 LLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXXX 2550
            LLPSE L IL++I E+T+K+L+ KGYFPQ+G+ILQY+PVPPNCL VP+            
Sbjct: 176  LLPSEVLAILRRIREDTRKKLSAKGYFPQEGYILQYLPVPPNCLSVPDISDGNNIMSSDH 235

Query: 2551 XXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPH-ASRKFI 2727
               +L++VL  I+ IK SRSG PNF +HEVE+  LQA++ +Y++ RGT K      ++F 
Sbjct: 236  SITMLRKVLRQIDIIKSSRSGTPNFEAHEVEANDLQAAVVQYLQFRGTGKASRDVDKRFG 295

Query: 2728 VGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDR 2907
            +  EA D + K W EKMKTLFI KGSGFSSRSVITGD Y+G+ EIG+P EIA+++TFE+R
Sbjct: 296  IHKEAADTTTKAWLEKMKTLFIRKGSGFSSRSVITGDPYKGVGEIGLPCEIAQKITFEER 355

Query: 2908 VTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINR 3087
            V++ NM  LQ+LVD++LCLTYKDG + Y++  GSKGHT+L+ GQI++R+IMDGD VFINR
Sbjct: 356  VSQHNMAYLQKLVDEKLCLTYKDGSSTYSLREGSKGHTFLRPGQIVHRRIMDGDTVFINR 415

Query: 3088 PPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFS 3267
            PP+THKHSLQA SVYVHDDHTVKINPL+C PL ADFDGDCIHLFYPQSL+AKAEV+ELF+
Sbjct: 416  PPTTHKHSLQALSVYVHDDHTVKINPLMCGPLSADFDGDCIHLFYPQSLSAKAEVLELFA 475

Query: 3268 VEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRN 3447
            V KQLLSSH  N NLQ   DSLL+LK+ F   F ++A AQQL+MFL   LP  A+   R 
Sbjct: 476  VGKQLLSSHTGNFNLQLATDSLLSLKLMFSHYFFDKAAAQQLAMFLPMALPDSAVVDVRK 535

Query: 3448 SGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGP 3627
            SG  WT  Q+L + LPD  D  GE H I + + L  D++RD +               GP
Sbjct: 536  SGAMWTTLQILGAALPDGFDSCGETHTIGKSQFLGIDYHRDLISSILNDVITSIYFMKGP 595

Query: 3628 KEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNE 3807
             + ++FFN LQPLLME L  +GFS++LRDF + K V + ++  +Q + ++L+ LR +YNE
Sbjct: 596  NDVLKFFNSLQPLLMENLCTEGFSISLRDFYMTKAVRDGIQERIQCMSKLLHHLRSSYNE 655

Query: 3808 LVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLY 3987
             V+VQ+++HLR  K+P++ F+LK S +G LID+KSES+  KV            DRGK Y
Sbjct: 656  SVEVQLEHHLRNEKLPVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFY 715

Query: 3988 SKALVEDIFSHYVTKY----SNGAEAYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXXXG 4155
            +K LV D+   +  KY    +N +E +GLV+S  F+GL+ ++ +IH             G
Sbjct: 716  TKTLVHDMAQLFQKKYPSVGTNPSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRG 775

Query: 4156 LTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPVGVL 4335
            LTEPGTLFK LMAILRDVVICYDGTVRNV SNSI+QFEY  +   N+  +  AG+PVGVL
Sbjct: 776  LTEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVL 835

Query: 4336 AATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKNFC 4515
            AATA+SNPAYKAVLDSS ++NSSWE+MKEILL  V++KN  SDRRV+LYLNDC C + +C
Sbjct: 836  AATAMSNPAYKAVLDSSPSSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYC 895

Query: 4516 KENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVLNK 4695
            +E AA+ V+N+L ++ L++ A +F IEY      +E SET +GL+GHI L++ +L+ L  
Sbjct: 896  REKAAYVVKNHLSKVCLKDAADEFLIEYAGRQAGYENSETGTGLIGHIRLNQGQLENLGI 955

Query: 4696 STEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDHHGISS-QLPCVQFTYLN 4872
            S  E+  +C++ IS + KKK  +  + +RI LS SE CS   + G      PC++F++ +
Sbjct: 956  SVLEVHERCQENISSFQKKK-KIGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCLRFSWPD 1014

Query: 4873 ETED-FEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGEIA 5049
             ++D  E+  H +A++ICPILLDTV+KGD RV SANI W+  D+ SW+R+   + +GE+A
Sbjct: 1015 ASDDHLERVSHILADMICPILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELA 1074

Query: 5050 LEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSVQR 5229
            L++V+EK AV++ GDAW+ + D+CLPV+HL+D+ RSIPY I+Q+QEL+GISCAF+Q+V+R
Sbjct: 1075 LDIVLEKEAVKQRGDAWRILMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVKR 1134

Query: 5230 LSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLTPM 5409
            LSTS+  V KGVLK+HL+L+ANSMTC G+L+GFN GG KAL RSL VQ+PFTEATL TP 
Sbjct: 1135 LSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPR 1194

Query: 5410 KCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEFLD 5589
            KCFE AAEK H D L SIV+SCSWGKHVAVGTG+ F++L + + +  N    +DVY FL 
Sbjct: 1195 KCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFLH 1254

Query: 5590 MVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMA-----FEDDTTFDDNTKVE 5754
            +VR TS +     +C G ++D+L       G+ LSP  +       FED   FD N  ++
Sbjct: 1255 LVRNTSAQEVEGTSCLGAEIDELEEDEDM-GLYLSPNRDSGSEMPTFEDRAEFDYNENLD 1313

Query: 5755 RAYADKRSFENWEGTKSRWEGITSSKCDIGSSQGWEKLDKSASP----VHKPGIWSSWD- 5919
                        + + S WE  +S     G S  W+   K+ +     V++   WS+W  
Sbjct: 1314 EG----------KPSGSAWEKASSGSVKSGGS--WDMAGKTQNGAEEGVNQSDSWSAWGK 1361

Query: 5920 -VDKVQQQPIESSKLEVERDGFCTWDSVRVKKADCLSGQSDAWNEFVTDRNVDRPEKLLV 6096
             VD+ +    +S   E                      QS +W+ +      D       
Sbjct: 1362 KVDEPENNRQQSGSGE----------------------QSGSWSSWGKKVEKDGGS---- 1395

Query: 6097 WDAKPTSSPTKHISDDSSFSKLDAGAHESFNAADSLKSFGDTSKKPEKGAWASIEMQDGW 6276
            WD        K ++ +SS+ K   G       A+  K    +        W+S   +DG 
Sbjct: 1396 WDEP------KQLNSESSWGKAPNGGGLGSATAEGNKRLDQSVND-----WSSSVSRDGQ 1444

Query: 6277 AQRGVKGHERPLNIERWKENRANDPRDQGWR--SQGWGSSNSADPASHKNHSSRSPVTAD 6450
                     +   +E +K         + W   S+GW   N        N  +RS   AD
Sbjct: 1445 KXTNTXXLYKKWWLEFFK---------RWWLELSEGWQWKN--------NRPARS---AD 1484

Query: 6451 DWKGWNTNKTFNFKGRRSESFTPEEEKILVDVEPIMHSLRKILHDSSDGSRLSPEDQSFI 6630
            D    N    F    ++ + FT EE++I+ DV+PIM  +R           LS +DQS+I
Sbjct: 1485 DS---NRGGHFTATRQKIDLFTAEEQEIISDVDPIMLKVRS--------DPLSADDQSYI 1533

Query: 6631 MENVFKHHPDKQAKVTNRIDYIMVDKHESFKDSRCFYVVSCDGSSADFSYLKCMENFVKE 6810
            ++ V  +HPDK  K+   +DYI V KH +F+D+RCFYVVS DG+  DFS  KC+ENFV+ 
Sbjct: 1534 IDTVLNYHPDKAVKMGAGLDYITVSKHTNFQDTRCFYVVSTDGAKQDFSTRKCLENFVRS 1593

Query: 6811 NYPEHAESFNKKYFRR 6858
             YP+ AE+FN+KYF++
Sbjct: 1594 KYPDKAETFNEKYFKK 1609


>ref|XP_004951807.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Setaria
            italica]
          Length = 2038

 Score = 1498 bits (3879), Expect = 0.0
 Identities = 791/1590 (49%), Positives = 1048/1590 (65%), Gaps = 43/1590 (2%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            ME++  + L  +G I+SIK SL+T EEICTYSIND PV+HPSQL NPFLGLPLE+GKCE+
Sbjct: 1    MEEDQSAILFAEGAIKSIKLSLSTEEEICTYSINDCPVNHPSQLANPFLGLPLEAGKCEA 60

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKIGSSQAKETLS 2193
            CG +E +KCEGHFGYI+LP P+YHP HI+EL+ +L+L+C KC+R+KK K+     KET S
Sbjct: 61   CGASENDKCEGHFGYIELPVPIYHPCHISELRQLLSLICFKCLRIKKGKVNKQNGKETAS 120

Query: 2194 YS-SCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNM-CQ 2367
             + SC YCRD+  +++KE KT+DGA  LEL    R  + +  WNFLDK+GFH+G +   +
Sbjct: 121  ATLSCYYCRDIPALSLKETKTTDGAIRLELRAPPRKHMTERSWNFLDKYGFHYGGSAHSR 180

Query: 2368 SLLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXX 2547
             LLP E+L IL+K+P++T+++LA +GY  Q G++++Y+PVPPNCLY+PE           
Sbjct: 181  LLLPEEALNILKKVPDDTRRKLAARGYTVQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYD 240

Query: 2548 XXXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPHA-SRKF 2724
                LLK+VL  IE IK+SRSG+PNF SHE ES  +Q ++ +Y+ LRGTT+ P   S++F
Sbjct: 241  ISIALLKKVLQKIEQIKRSRSGSPNFESHEEESCDIQLAVGQYIHLRGTTRGPQDNSKRF 300

Query: 2725 IVGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFED 2904
             VGT+    S KQW EKM+TLFISKGSGFSSRSV+TGD Y G++ IG+P E+AKR+TFE+
Sbjct: 301  AVGTDTAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEE 360

Query: 2905 RVTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFIN 3084
            +VT+ N++RLQE+VDK LCLTY+DG   YAI+VGSKGHT LKVGQ I+R+I+DGD+VF+N
Sbjct: 361  QVTDININRLQEVVDKGLCLTYRDGKDTYAITVGSKGHTTLKVGQTISRRIVDGDVVFLN 420

Query: 3085 RPPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELF 3264
            RPPSTHKHSLQAF  YVHDDHTVKINPL+C+P  ADFDGDC+H++YPQSLAAKAE +ELF
Sbjct: 421  RPPSTHKHSLQAFYAYVHDDHTVKINPLMCSPFSADFDGDCVHIYYPQSLAAKAEALELF 480

Query: 3265 SVEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSR 3444
            SVEKQL+SSH+  +NLQ  NDSL+A+K     T L++ +A QL+MF+   LP PA+ KS 
Sbjct: 481  SVEKQLISSHSGQVNLQLGNDSLVAMKAMSSRTMLSKELANQLAMFVPFSLPAPAVIKSI 540

Query: 3445 NSGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNG 3624
               P WTI+Q++Q  LP ++ C G+ HL+R G I++ D ++D +               G
Sbjct: 541  ---PAWTITQIVQGALPAKLTCQGKTHLVRDGNIIKLDLDKDHVQDSFNDLVSSVLSEKG 597

Query: 3625 PKEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYN 3804
            P EA+QF N+LQPLLME L LDGFSV L+DF+VPK ++E++  ++Q+   +L Q R + +
Sbjct: 598  PGEALQFLNVLQPLLMEFLLLDGFSVTLKDFNVPKAILEEVHKNIQKQSLILEQSRFSKS 657

Query: 3805 ELVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKL 3984
            ++ +++V+N+L+ +K  +  F++K S LG LID K E+S++KV              GKL
Sbjct: 658  QIAEMRVENNLKGVKQQISEFVIKCSDLGLLIDPKKEASMSKVVQQLGFVGLQLYHEGKL 717

Query: 3985 YSKALVEDIFSHYVTKYS-----NGAEAYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXX 4149
            YS  LVED FS++V K+S     +  EAYGLV+SS+FHGLN +EEL+H            
Sbjct: 718  YSSRLVEDCFSNFVNKHSDIGDEHPPEAYGLVQSSYFHGLNPYEELVHSISTREAIVRSS 777

Query: 4150 XGLTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPVG 4329
             GLTEPGTLFK LMAILRDVVICYDGTVRN CSNSI+Q +Y  + E +     P GEPVG
Sbjct: 778  RGLTEPGTLFKNLMAILRDVVICYDGTVRNTCSNSIIQLKYKEDDETDFPSALPPGEPVG 837

Query: 4330 VLAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKN 4509
            VLAATAIS PAY+AVLDSSQ+ N+SWE MKEIL ++V YKN   DR+V+L+LNDC C K 
Sbjct: 838  VLAATAISTPAYRAVLDSSQSNNASWESMKEILQTKVGYKNDMKDRKVILFLNDCSCPKK 897

Query: 4510 FCKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVL 4689
            FCKE AA TVQ+ L+R+TL +CA D SIE+QK I   E SE A  LVGHIHLDK +L+ +
Sbjct: 898  FCKERAALTVQSCLRRVTLADCATDISIEHQKQINLDETSEAAPTLVGHIHLDKAQLERI 957

Query: 4690 NKSTEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDH-HGISSQLPCVQFTY 4866
            N ST++I++KC+++   Y KKKGHL  + ++I  S  +C  +++   G     PCVQF++
Sbjct: 958  NISTQDILQKCEEISGRYGKKKGHLCHLFKKITFSTCDCSFAQNTIDGYLHVAPCVQFSF 1017

Query: 4867 LNE----TEDFEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTL 5034
             ++    +E  E+ ++ +A+ +C +LLDT++KGD R+ SA IIWV +++ SWV+N+ NTL
Sbjct: 1018 SDDNTILSESVERAVNVIADSVCSVLLDTIIKGDPRIQSAKIIWVESEATSWVKNTQNTL 1077

Query: 5035 KGEIALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFD 5214
            KGE  LE+++EK+   +NG AW+T+ DAC+PVL+L+D+RRSIPYGIQQ++ELLGISCAFD
Sbjct: 1078 KGEPTLEIIVEKDEAVRNGYAWRTVMDACIPVLNLIDTRRSIPYGIQQVKELLGISCAFD 1137

Query: 5215 QSVQRLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEAT 5394
            Q VQRLST+++ VAKGVLK+HLILVANSMTCTG+L+GFN  G+KA FRSLKVQVPFTE+T
Sbjct: 1138 QVVQRLSTTVKMVAKGVLKDHLILVANSMTCTGNLIGFNTSGYKATFRSLKVQVPFTEST 1197

Query: 5395 LLTPMKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDV 5574
            L TPMKCFE AAEK  SD LG +VSSCSWGKH A+GTG++FQILW+  Q+ +N+  G  +
Sbjct: 1198 LFTPMKCFEKAAEKCDSDSLGCVVSSCSWGKHAAIGTGSSFQILWNENQLKSNKEYGDGL 1257

Query: 5575 YEFLDMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVE 5754
            Y+FL +VR    + E     F  DVD L        VCLSPE +       TF+DN + E
Sbjct: 1258 YDFLALVRT---DQEKAGYAFLDDVDYLVEENAVDDVCLSPEPD-GTHGKPTFEDNVE-E 1312

Query: 5755 RAYADKRSFENWEGTKSRWEGITSSKCDIGSSQGWEK---------------LDKSASPV 5889
            +   +  S+EN     S WE   S+  D G   GW                  D  A+  
Sbjct: 1313 QGIQNGSSWENDTTMNSSWEQNASAGNDSGDWGGWSNGAAAATKPLDQDNSCWDAHATVE 1372

Query: 5890 HKPGIWSSWDVDKVQQQPIESSKLEVERDGFCTWDSVRVKKADCLSGQSDAWNEFVTDRN 6069
            +    W  W  +K         +   E+    TW       AD  +G   +  +   +  
Sbjct: 1373 NNSTDWGGWGTEK---------QTNGEQAEINTW-------ADKGAGMESSAGDDNWEMK 1416

Query: 6070 VDRPEKLL------VWDAKPTSSPTKHISDDSSFSKLDAGAHESFNAADSLKSFG---DT 6222
               PEK         W   P  +      +     K D G         S K  G   D 
Sbjct: 1417 SSAPEKSKKNLDHDTWGNMPAPASASASENTWGEQKGDGGDGAWEKQTGSCKEQGMDVDQ 1476

Query: 6223 SKKPEKGAWASIEMQDGWAQRGVKGH--ERPLNIERWKENRANDPRDQGWRSQGWGSSNS 6396
                +K    S  M D     GV G+  E+P     W E   N  +D       WG    
Sbjct: 1477 DSWGKKTMPPSSNMWDKKKSDGVHGNWEEQP---SSWNEQMLNVDQD------SWGD--- 1524

Query: 6397 ADPASHKNHS----SRSPVTADDWKGWNTN 6474
               A  KN+S    SR P  A  +K   TN
Sbjct: 1525 ---AREKNNSHAGDSRWPEQASTYKRKRTN 1551



 Score =  185 bits (470), Expect = 2e-43
 Identities = 130/396 (32%), Positives = 198/396 (50%), Gaps = 25/396 (6%)
 Frame = +1

Query: 5758 AYADKRSFENWEGTKSRWEGITSS------KCDIGS---------SQGWEKLDKSASPVH 5892
            ++ D R   N     SRW    S+        D GS         +  W+  +     + 
Sbjct: 1521 SWGDAREKNNSHAGDSRWPEQASTYKRKRTNADAGSWDNMAMAPSNNAWDAGEGFGRSIT 1580

Query: 5893 KPGIWSSWDVDKVQQQPIESSKLEVERDGFCTWDSVRV--KKADCLSGQSDAWNEFVTDR 6066
            K    SSW  +K + +  E SK+  E D + T  S     +K D L    D+W     D 
Sbjct: 1581 KSDAGSSWG-NKDKMETDEHSKIPKEFDPWNTGKSNESSWEKTDALQ---DSWGNSAADN 1636

Query: 6067 NVDRP---EKLLVWDAKPTSSPTKHIS---DDSSFSKLDAGAHESFNAADSLKSFGDTSK 6228
            N  +    +K+ V D         +++    ++     D GA E    +D+  S+G+ + 
Sbjct: 1637 NNTQEGSWDKIAVKDTNSQQDSWGNVAVQNKNTQNGSWDNGA-EKVPTSDAQDSWGNLAA 1695

Query: 6229 KPEKGAWAS-IEMQDGWAQRGVKGHERPLNIERWKENRANDPRD-QGWRSQGWGSSNSAD 6402
             P   + A   +  DGW       +  P    + K N   D  D +GW+S+GWG   S +
Sbjct: 1696 TPAGNSDAKQSDSWDGW-------NAAPAENSQGKCNETTDSGDNKGWKSEGWGGK-SGN 1747

Query: 6403 PASHKNHSSRSPVTADDWKGWNTNKTFNFKGRRSESFTPEEEKILVDVEPIMHSLRKILH 6582
             +  +N+S R P   D+       + F          T EE+ IL+++EPIM  +R+I  
Sbjct: 1748 WSGQRNNSGRPPRGPDERGPPPPRQRFEL--------TAEEKNILLEIEPIMMRVRRIFR 1799

Query: 6583 DSSDGSRLSPEDQSFIMENVFKHHPDKQAKVTNRIDYIMVDKHESFKDSRCFYVVSCDGS 6762
            ++ +G RL PED+ FI+E V ++HP+KQ+KV++ IDYI VDKHE+F+D+RCFYVVS DGS
Sbjct: 1800 EACNGVRLQPEDEKFILEKVLENHPEKQSKVSSAIDYITVDKHETFQDTRCFYVVSTDGS 1859

Query: 6763 SADFSYLKCMENFVKENYPEHAESFNKKYFRRRRAE 6870
             ADFSY KC+ENFV++++ E A++F  KY R RR +
Sbjct: 1860 RADFSYFKCLENFVRKSFKEDADTFCMKYLRPRRRQ 1895


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score = 1462 bits (3784), Expect = 0.0
 Identities = 785/1598 (49%), Positives = 1054/1598 (65%), Gaps = 45/1598 (2%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            ME+N  S  +L+G I  I+F LAT +EICT SI+D  +SH SQL NPFLGLPLE GKCES
Sbjct: 1    MEENT-SSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES 59

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMK--KLKIGSSQAKET 2187
            CGT+E  KCEGHFGYI+LP P+YHP HI+ELK +L+L+CLKC++MK  KL+I +    + 
Sbjct: 60   CGTSEPGKCEGHFGYIELPIPIYHPSHISELKRMLSLLCLKCLKMKSTKLQIKNDGVAQR 119

Query: 2188 LSYSSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNMCQ 2367
            L  SSC  C +   ++I +VKT+DGAF LEL + S+ +L  GFWNFL+++GF +GD++ +
Sbjct: 120  L-LSSC--CEEASQVSIVDVKTTDGAFYLELKLPSKFRLCAGFWNFLERYGFRYGDSLTR 176

Query: 2368 SLLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXX 2547
            +LL SE  ++L++IPEET+K+LAGKGYFPQDG+IL+Y+PVPPNCL VP+           
Sbjct: 177  TLLASEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSD 236

Query: 2548 XXXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPHASRKFI 2727
                +LK+VL  +E I+ SRSG PNF S EVES  LQ ++ +Y+ +RGT K         
Sbjct: 237  LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARF 296

Query: 2728 VGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDR 2907
              ++  + + K W EKM+TLFI KGSGFSSRSVITGDAY+ +NEIG+P EIA+R+TFE+R
Sbjct: 297  GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 356

Query: 2908 VTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINR 3087
            V   N++ LQELVD +LCLTY DG + Y++  GSKGHT+L+ GQ+++R+IMDGD VFINR
Sbjct: 357  VNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINR 416

Query: 3088 PPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFS 3267
            PP+THKHSLQA SVYVHDDHTVKINPL+C PL ADFDGDCIHLFYPQSLAAKAEV+ELFS
Sbjct: 417  PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 476

Query: 3268 VEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRN 3447
            VEKQLLSSHN NLNLQ   D+LL+LKV F+  FL++A AQQL+MF  S LP+PAL K+  
Sbjct: 477  VEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFAQQLAMFALSPLPRPALSKAHC 536

Query: 3448 SGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGP 3627
            SGP WT  Q+LQSVLP   D  G+++LI++ E+L  DF+RD +               GP
Sbjct: 537  SGPRWTALQILQSVLPPGFDSCGDRYLIKKSEVLNGDFDRDTIPSVINEIVTSIFFEKGP 596

Query: 3628 KEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNE 3807
            +E ++FF+ LQPLLME LF DGFSV+L DFS+ K  + +++  +Q +  +L     T NE
Sbjct: 597  EEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE 656

Query: 3808 LVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLY 3987
            LVD+Q++NH+R +K+ +  FILK S LG LID+KS+S+++KV            DRGK Y
Sbjct: 657  LVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 716

Query: 3988 SKALVEDIFSHYVTKY----SNGAEAYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXXXG 4155
            SK LVEDI SH+   Y    +     YGL+K  FFHGL+ +EE+ H             G
Sbjct: 717  SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 776

Query: 4156 LTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFN-REGNVLCDPPAGEPVGV 4332
            L+EPGTLFK LMA+LRDVVICYDGTVRNVCSNSI+QF+YA N R+ + L   PAGEPVGV
Sbjct: 777  LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLF--PAGEPVGV 834

Query: 4333 LAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKNF 4512
            LAATA+SNPAYKAVLDSS ++N+SWELMKEILL RV++ N   DRRV+LYLNDC CG+ +
Sbjct: 835  LAATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKY 894

Query: 4513 CKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVLN 4692
            C+E AA+ V+N LKR++L++ AV+F IEY+K     E      GLVGHIHL+K+ L+ L 
Sbjct: 895  CQERAAYMVKNQLKRVSLKDAAVEFLIEYKK----PEIISDDEGLVGHIHLNKILLEDLR 950

Query: 4693 KSTEEIVRKCKDVISGYCKKKGHLSKVME---RIHLSASECCSSEDHHGIS-SQLPCVQF 4860
             S  +I+ KC++ +  +CKKK  + KV++      LS SECCS +       S +PC+ F
Sbjct: 951  ISMHDILPKCQETLKSFCKKK-KMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMF 1009

Query: 4861 TYLNETEDF-EKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLK 5037
                 ++ + +K    +AN+I P+LL+T++KGD R+ SANIIW+  D+ +W+RN     K
Sbjct: 1010 VLRGASDSYLDKLSGVLANMIYPVLLETIIKGDPRICSANIIWISPDTTAWIRNPSKNRK 1069

Query: 5038 GEIALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQ 5217
            GE+AL+VV+EK+ V+++GDAW+T+ D+CLPV HL+D+RRS+PY I+Q+QELLG+SCAF+Q
Sbjct: 1070 GELALDVVLEKSVVKQSGDAWRTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQ 1129

Query: 5218 SVQRLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATL 5397
            +VQRLS S+  VAKGVLKEHLIL+ANSMTC G L+GFN GG+KAL RSL VQVPFTEATL
Sbjct: 1130 AVQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATL 1189

Query: 5398 LTPMKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVY 5577
              P KCFE AAEK H+D L S+V++CSWGKHVAVGTG+ F +LW  +    N+  G DVY
Sbjct: 1190 FMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVY 1249

Query: 5578 EFLDMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVER 5757
            +FL MVR ++G  E+   C G +VD L          LSPE N+   D   F+D  + + 
Sbjct: 1250 DFLHMVRSSTGIEELDTGCLGEEVDGLEDEFDW---SLSPEHNLC-SDKPIFEDLVEDQS 1305

Query: 5758 AYADKRSFENWE-------GTKSRWEGITSSKCDIGSSQGW-----------EKLDKSAS 5883
               +K+  ENW+        ++ +WE + +S      S GW           +KL+K+ S
Sbjct: 1306 WLENKQENENWDSEADCRKSSEDKWEKLGTSL--EKPSSGWRTEGAWGKSSDDKLEKAGS 1363

Query: 5884 PVHKPGIWSSWDVDKVQQQPIESSKLEVERDGFCTWDSVRVKKADCLS--GQSDAWNEFV 6057
            P  KP  W +           E+S  E   D    W++V    A   S  G   +W +  
Sbjct: 1364 PSRKPSGWGT-----------EASWGESSSD---KWENVGSPAAKSFSEWGTEASWGKSF 1409

Query: 6058 TDRNVDRPEKLLVWDAKPTSSPTKHISDDSSFSKLDAGAHESF--NAADSLKSFG----- 6216
                 D+PE +      P +  +     ++S+ K      E+   +A+  L  +G     
Sbjct: 1410 G----DKPENV----RSPAAKTSSGWGSEASWGKSPGDRQENVGRSASKPLSGWGAKASW 1461

Query: 6217 --DTSKKPEKGAWASIEMQDGWAQRGVKGHERPLNIERWKENRANDPRDQGWRSQGWGSS 6390
               +  K E+      +    W           + +E+      N     GW ++   S 
Sbjct: 1462 GKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPL--SGWGTEAQDSG 1519

Query: 6391 NSADPASHKNHSSRSPV----TADDWKGWNTNKTFNFK 6492
             S+D +  K+H++ +       +++  GW+T  ++N K
Sbjct: 1520 KSSDWSEWKDHANATASWGRNGSEENSGWDTKASWNTK 1557



 Score =  166 bits (419), Expect = 2e-37
 Identities = 124/382 (32%), Positives = 182/382 (47%), Gaps = 40/382 (10%)
 Frame = +1

Query: 5842 GSSQGWEK-----LDKSASPVHKP--------------GIWSSWDVDKVQQQPIESSKLE 5964
            G+   W+K     L+K A+P   P                WS W  D             
Sbjct: 1484 GTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWK-DHANATASWGRNGS 1542

Query: 5965 VERDGFCT---WDSVRVKKAD----CLSGQSDAWN---EFVTD--RNVDRP---EKLLVW 6099
             E  G+ T   W++  + K D     +   S  W    +F T    +  +P   EK +V 
Sbjct: 1543 EENSGWDTKASWNTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVH 1602

Query: 6100 DAKPTSSPTKHISDDSSFSKL----DAGAHESFNAADSLKSFGDTSKKPEKGAWASIEMQ 6267
                 + P    +DDSS+ K     +A   +  +      +  ++S+     AW   ++ 
Sbjct: 1603 QIGGWNVPDAKGTDDSSWGKQKLTENAKGTDDSSWGKQKHTENESSQPASSNAW---DLP 1659

Query: 6268 DGWAQRGVKGHERPLNIERWKENRANDPRDQGWRSQGWGSSNSADPASHKNHSSRSPVTA 6447
            D        G E  + +  W ++R    ++   +++GW SS S +    KN   RSP   
Sbjct: 1660 DATG-----GSETEMQV--WGQSR----KEPFKKNRGWASS-SGEWKGKKNRPPRSPGVV 1707

Query: 6448 DDWKGWNTNKTFNFKGRRSESFTPEEEKILVDVEPIMHSLRKILHDS--SDGSRLSPEDQ 6621
            +D      N  +    +R + FT EE+ IL DVEPIM S+R+I+H S  +DG RLS +D+
Sbjct: 1708 NDDS--TVNAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDK 1765

Query: 6622 SFIMENVFKHHPDKQAKVTNRIDYIMVDKHESFKDSRCFYVVSCDGSSADFSYLKCMENF 6801
            SFI +NVF +HPDK  K+   ID+  VDKH SF+DSRC +VVS DGS  DFSY KC+E+F
Sbjct: 1766 SFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESF 1825

Query: 6802 VKENYPEHAESFNKKYFRRRRA 6867
            ++  YPE  + F  KYFRR R+
Sbjct: 1826 IRGKYPEFVDEFIGKYFRRPRS 1847


>gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
          Length = 2017

 Score = 1462 bits (3784), Expect = 0.0
 Identities = 790/1660 (47%), Positives = 1052/1660 (63%), Gaps = 114/1660 (6%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            ME++  +  V +G I+SIK SL+T +EI TYSIND PV+HPSQL NPFLGLPLE+GKCES
Sbjct: 1    MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKIGSSQAKETLS 2193
            CG +E  KCEGHFGYI+LP P+YHP H+ EL+ ILN+VCLKC+R+KK K+  ++ K+  S
Sbjct: 61   CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTS 120

Query: 2194 YSSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNM-CQS 2370
              SC YCRDL  +++KE+KT+DGAF LEL +  R  + +G WNFLDK+GFHHG    C++
Sbjct: 121  ALSCYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRT 180

Query: 2371 LLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXXX 2550
            LLP E+L IL+KIPEETK++LA +GY  Q G++++Y+PVPPNCLY+PE            
Sbjct: 181  LLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2551 XXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPHASRK-FI 2727
               LLK+VL  IE IKKSR+G+PNF SHEVES  LQ SI++Y+ LRGTT+ P  + K F 
Sbjct: 241  SISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFA 300

Query: 2728 VGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDR 2907
            + T+ +  S KQW EKM+TLFISKGSGFSSRSV+TGD Y G++ IG+P E+AKR+TFE++
Sbjct: 301  ISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQ 360

Query: 2908 VTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINR 3087
            VT+ N++RLQE+VDK LCLTY+DG   YAI+VGSKGHT LKVGQ I+R+I+DGD+VF+NR
Sbjct: 361  VTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNR 420

Query: 3088 PPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFS 3267
            PPSTHKHSLQAF VYVH+DHTVKINPL+CAP  ADFDGDC+H++YPQSLAAKAE +ELFS
Sbjct: 421  PPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFS 480

Query: 3268 VEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRN 3447
            VEKQL SSH+  +NLQ V+DSLLALK     T L++  A QL+M ++  LP PA+ KS+ 
Sbjct: 481  VEKQLTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAVIKSK- 539

Query: 3448 SGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGP 3627
              P+WTISQ++Q  LP  +   G+KH++R   I++ D +++++               GP
Sbjct: 540  --PYWTISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKESVQTSFSDLVYSTLSVKGP 597

Query: 3628 KEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNE 3807
             EA+QF N+LQPLLME++ LDGFSV+L+DF+VPK ++E+ + ++++   +L Q R   N+
Sbjct: 598  GEALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAENQ 657

Query: 3808 LVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLY 3987
            +V+++VDN+L+ IK  +  F++K S LG LID KS+SS++KV              GK Y
Sbjct: 658  VVEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKFY 717

Query: 3988 SKALVEDIFSHYVTKY-----SNGAEAYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXXX 4152
            S+ LVED +  +V K+      +  EAYGLV+SS+FHGLN +EEL+H             
Sbjct: 718  SRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSSR 777

Query: 4153 GLTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPA---GEP 4323
            GLTEPGTLFK LMA+LRDVVICYDGTVRNVCS SI+Q  Y    E + L  P A   GEP
Sbjct: 778  GLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYT---EDDALDFPSAIGPGEP 834

Query: 4324 VGVLAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCG 4503
            VGVLAATAISNPAYKAVLD+SQ+ N+SWE MKEIL +   YKN   DR+V+L+LNDC C 
Sbjct: 835  VGVLAATAISNPAYKAVLDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCA 894

Query: 4504 KNFCKENAAFTVQNYLKRITLRECAVDFSIE----------------------------- 4596
            K FCKE AA  VQ  L+RITL +CA D  IE                             
Sbjct: 895  KKFCKEKAAIAVQGCLRRITLEDCATDICIEDGNWAAPAGFQHPVPPPQCKILPVPIPIP 954

Query: 4597 -------------------YQKHITFHE-------GSETASGLVGHIHLDKMRLQVLNKS 4698
                               Y  H+  ++        SE A  LVGHIHLD+  L+ +N S
Sbjct: 955  AHGSVKFPPVPIPAPEHLKYNIHVVRYQKQIGLDGTSEAAPALVGHIHLDRAHLERINIS 1014

Query: 4699 TEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSED-HHGISSQLPCVQFTYLNE 4875
            TE+I++KC++V   Y KKKGHLS + + I  S  +C  ++    G   +LPC+QF   + 
Sbjct: 1015 TEDILQKCQEVSGKYGKKKGHLSNLFKNITFSTCDCLFTQKLVDGKLPKLPCLQFFVSDN 1074

Query: 4876 ---TEDFEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGEI 5046
               +E  E+ +  +A+ +C +LL+T++KGD R+  A I+WVG+D+ SWV+N+    KGE 
Sbjct: 1075 MIVSESVERAVSVLADSLCGVLLNTIIKGDPRIQEAKIVWVGSDATSWVKNTQKASKGEP 1134

Query: 5047 ALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSVQ 5226
            A+E+++E+      GDAW+T  DAC+PVL+L+D RRSIPYGIQQ++ELLGISCAFDQ VQ
Sbjct: 1135 AVEIIVEEEEALHIGDAWRTTMDACIPVLNLIDIRRSIPYGIQQVRELLGISCAFDQVVQ 1194

Query: 5227 RLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLTP 5406
            RLST++R VAK VLK+HL+LVANSMT TG+L GFN  G+KA FRSLKVQVPFTE+TL+TP
Sbjct: 1195 RLSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNNAGYKATFRSLKVQVPFTESTLITP 1254

Query: 5407 MKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEFL 5586
            MKCFE AAEK HSD LG +VSSCSWGKH A GTG++FQILW+  Q+ +N+  G  +Y++L
Sbjct: 1255 MKCFEKAAEKCHSDSLGCVVSSCSWGKHAASGTGSSFQILWNESQLKSNKEYGDGLYDYL 1314

Query: 5587 DMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVERAYA 5766
             +VR    +   T   F  DVD L        VCLSPE +        FDDN + E+   
Sbjct: 1315 ALVRTDEEKARYT---FFDDVDYL-AEENEADVCLSPELDGTI-GQPIFDDNLE-EQDVQ 1368

Query: 5767 DKRSFENWEGTKSRWEGITSSKCDIGSSQGWEKLDKSA-SPVHKP--------------- 5898
            +  S++N   T + WE   S+  D     GW      A + V KP               
Sbjct: 1369 NNSSWDNGTTTNASWEQNGSAGNDSDKWGGWNDAAAGADTGVTKPANQGNSCWDVPATVE 1428

Query: 5899 ---GIWSSW------DVDKVQQQPIESSKLEVERDGFCTWDSVRVKKADCLSGQSDAWNE 6051
                 W  W      + +K+ ++P +     V+     T      KK        ++W E
Sbjct: 1429 KSSSDWGGWGTEKAKEKEKISEEPAQHDAWSVQGPKRATDGGASWKKQSSTQNDGNSWKE 1488

Query: 6052 FV------TDRNVDRPEKLLVWDAKPTSSPTKHISDDSSFSKLDAGAHESFNAADSLKSF 6213
                         D  +K   W      +   +   + S+  + A AH     A + KS+
Sbjct: 1489 NKGRGSNGGSWEKDNAQK-GSWGRGNDEAENNNDVQNKSWETVAADAH-----ASTEKSW 1542

Query: 6214 GDTSKKPEKGAWASIEMQ--------------DGWAQRGVKGHERPLNIERWKENRANDP 6351
            G+ +  P   AW++  +               DGW   GV   ++ +N +  KE+  N P
Sbjct: 1543 GNVTASPSDNAWSAAPVSQGNGSSDTKQSDSWDGWKSAGV---DKAINKD--KESLGNVP 1597

Query: 6352 RDQGWRSQGWGSSNSADPASHKNHSSRSPVTADDWKGWNT 6471
                +      S+ +A P S  N  S +   +D W GW +
Sbjct: 1598 ASPSF------SAWNASPVSQGNERSDAK-QSDSWDGWKS 1630



 Score =  207 bits (528), Expect = 4e-50
 Identities = 140/435 (32%), Positives = 207/435 (47%), Gaps = 58/435 (13%)
 Frame = +1

Query: 5734 DDNTKVERAYADKRSFENWEGTKSRWEGITSSKCDIGSSQGWEKLDKSASPVHKPGIWSS 5913
            ++N  V+    +  + +    T+  W  +T+S  D   S         +S   +   W  
Sbjct: 1517 ENNNDVQNKSWETVAADAHASTEKSWGNVTASPSDNAWSAAPVSQGNGSSDTKQSDSWDG 1576

Query: 5914 WD---VDKVQQQPIESSKLEVERDGFCTWDSVRVKKADCLSG--QSDAWNEFVT---DRN 6069
            W    VDK   +  ES         F  W++  V + +  S   QSD+W+ + +   D+ 
Sbjct: 1577 WKSAGVDKAINKDKESLGNVPASPSFSAWNASPVSQGNERSDAKQSDSWDGWKSAGVDKA 1636

Query: 6070 VDRPEKLL----------VWDAKPTSSPTKHISDDSSFSKLDAGAHESFNAADSLK---S 6210
            +++ ++ L           W+A P S   + +    S S       +S    DS+K   S
Sbjct: 1637 INKDKESLGNVPASPSFSAWNAAPVSQGNERLDAKQSDSW---DGWKSAGVDDSVKDKES 1693

Query: 6211 FGDTSKKPEKGAWASIEMQ--------------DGWAQRGV-----KGHERPLNI----- 6318
            +G+    P   AW +  +               DGW   GV     K  E   N+     
Sbjct: 1694 WGNVPASPSDSAWNAAPVSQGNESSDAKQSDSWDGWKSAGVDASTNKDKESWGNVPASPS 1753

Query: 6319 -------------ERWKENRANDPRDQGWRSQGWGSSNSADPASHKNHSSRSPVTADDWK 6459
                         + W    AN+ R++ W+S GWG+    +    +N+  R P    D +
Sbjct: 1754 DSAWNAAPVSQGDDVWNSAEANESRNKDWKSDGWGA-RGGNWRGQRNNPGRPP-RKPDGR 1811

Query: 6460 GWNTNKTFNFKGRRSESFTPEEEKILVDVEPIMHSLRKILHDSSDGSRLSPEDQSFIMEN 6639
            G           RR    T EEEKIL ++EP + S+RKI  +S D  +LSPED+ FI EN
Sbjct: 1812 GLPRRPDERGPPRRHFDLTAEEEKILGEIEPTVLSIRKIFRESIDSIKLSPEDEKFIKEN 1871

Query: 6640 VFKHHPDKQAKVTNRIDYIMVDKHESFKDSRCFYVVSCDGSSADFSYLKCMENFVKENYP 6819
            V +HHP+KQ+KV+  ID+IMVDKH+ F+DSRC +VVS DG+ +DFSYLKCMENFV++ YP
Sbjct: 1872 VLEHHPEKQSKVSGEIDHIMVDKHQVFQDSRCLFVVSSDGTRSDFSYLKCMENFVRKTYP 1931

Query: 6820 EHAESFNKKYFRRRR 6864
            EH +SF KKYF+RRR
Sbjct: 1932 EHGDSFCKKYFKRRR 1946


>ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Oryza
            brachyantha]
          Length = 1993

 Score = 1458 bits (3774), Expect = 0.0
 Identities = 784/1630 (48%), Positives = 1056/1630 (64%), Gaps = 65/1630 (3%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            ME++  +  V +G I+SIK SLAT +EI  YSIND PV+HPSQL NPFLGLPLE+GKCES
Sbjct: 1    MEEDQSAIPVAEGAIKSIKLSLATEDEIRIYSINDCPVTHPSQLGNPFLGLPLETGKCES 60

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKIGSSQAKETLS 2193
            CG +E  KCEGHFGYI+LP P+YHP H+ EL+ ILNLVC KC+R+KK K+  ++ K+  S
Sbjct: 61   CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNLVCFKCLRVKKGKVKHTEGKDNTS 120

Query: 2194 YSSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNM-CQS 2370
              SC YCRDL  +++KE KT+DGA  LEL    R  + +G WNFLDK+GFHHG    C++
Sbjct: 121  ALSCYYCRDLPALSLKENKTADGAVRLELKAPPRKFMTEGSWNFLDKYGFHHGGTSHCRT 180

Query: 2371 LLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXXX 2550
            LLP E+L IL+KIP+ETK++LA +GY  Q G++++Y+PVPPNCLY+PE            
Sbjct: 181  LLPEEALNILKKIPDETKRKLAARGYIAQPGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2551 XXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPHASRK-FI 2727
               LLK+VL  IE IKKSR+G+PNF SHEVES  LQ SI++Y+ LRGTT+ P  + K F 
Sbjct: 241  SISLLKKVLQKIEQIKKSRAGSPNFESHEVESSDLQLSIAQYIHLRGTTRGPQDNTKRFS 300

Query: 2728 VGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDR 2907
            + T+++  S KQW EKM+TLFISKGSGFSSRSV+TGD Y G++ +G+P E+AKR+TFE++
Sbjct: 301  ISTDSSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDMVGLPSEVAKRITFEEQ 360

Query: 2908 VTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINR 3087
            VT  N+++LQE+VDK LCLTY+DG   YAI+VGSKGHT LKVGQ I+R+I+DGDIVF+NR
Sbjct: 361  VTNININKLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDIVFLNR 420

Query: 3088 PPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFS 3267
            PPSTHKHSLQAF  YVH+DHTVKINPL+C+P  ADFDGDC+H++YPQSLAAKAE +ELFS
Sbjct: 421  PPSTHKHSLQAFRAYVHEDHTVKINPLICSPFAADFDGDCVHIYYPQSLAAKAEALELFS 480

Query: 3268 VEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRN 3447
            VEKQL SSH+  +NLQ  NDSLLALK     T L++ +A QL+M ++  LP+PAL KSR 
Sbjct: 481  VEKQLTSSHSGKVNLQLANDSLLALKHMSFRTILSKEVANQLAMNVTYSLPKPALIKSR- 539

Query: 3448 SGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGP 3627
              P WTI+Q++Q  LP  +   G+KHL+R   I++ D +++++               GP
Sbjct: 540  --PHWTIAQIVQGALPKDLTSQGDKHLVRDSTIIKLDLDKESVQTSFSDLLYSTLSVKGP 597

Query: 3628 KEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNE 3807
             EA+QF N+LQPLLME++ LDGFSV+L+DF+VPK  +++ + ++++   +L Q R   N+
Sbjct: 598  GEALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVHLQEAQKNIEKQSIILEQSRCAENQ 657

Query: 3808 LVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLY 3987
             V+++VDN+L+ IK  +  F++K S LG LID KS+ S++KV              GK Y
Sbjct: 658  FVEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDPSVSKVVQQLGFVGLQLYREGKFY 717

Query: 3988 SKALVEDIFSHYVTKY-----SNGAEAYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXXX 4152
            S+ LVED FS++V K+      +  EAYGLV+SS+FHGLN +EEL+H             
Sbjct: 718  SRRLVEDCFSNFVNKHPAVRKEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSSR 777

Query: 4153 GLTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPA---GEP 4323
            GLTEPGTLFK LMA+LRDVVICYDGTVRNVCS SI+Q +Y   +E + L  P A   GEP
Sbjct: 778  GLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLKY---KEEDALDFPSAIAPGEP 834

Query: 4324 VGVLAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCG 4503
            VGVLAATAISNPAYKAVLD+SQ+ N+SWE MKEIL +   YKN   DR+++L+LNDC C 
Sbjct: 835  VGVLAATAISNPAYKAVLDASQSNNTSWERMKEILQTTTRYKNDTKDRKIILFLNDCSCA 894

Query: 4504 KNFCKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQ 4683
            K FCKE AA  VQ  L+RITL +CA D  IEYQK I+    SE +  LVGHIH D+  L+
Sbjct: 895  KKFCKEKAAIAVQGCLRRITLEDCATDICIEYQKQISLDGTSEASPALVGHIHFDRAHLE 954

Query: 4684 VLNKSTEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSED-HHGISSQLPCVQF 4860
             +N S E+I +KC++V   Y KKKGHLS + + I  S  +C  ++    G  +++PC+QF
Sbjct: 955  RINVSIEDIFQKCQEVSGKYGKKKGHLSHLFKNITFSICDCSFTQKLIDGKLAKVPCLQF 1014

Query: 4861 TYLNE----TEDFEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCN 5028
             +       +E  E  ++ +A+ +C +LL+T++KGD R+  A I+WVG+D+ SWV+N+  
Sbjct: 1015 FFPESNTMLSESVEGAVNLLADSVCGVLLNTIIKGDPRIQEAKIVWVGSDATSWVKNTKK 1074

Query: 5029 TLKGEIALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCA 5208
              KGE A+E+++E+      GD+W+   DAC+PVL L+D+RRSIPYGIQQ++ELLGISCA
Sbjct: 1075 ESKGEPAVEIIVEEQEALHTGDSWRITMDACIPVLDLIDTRRSIPYGIQQLRELLGISCA 1134

Query: 5209 FDQSVQRLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTE 5388
            FDQ VQRLST++R VAK VLK+HL+LVANSMT TG+L GFN  G+K  FRSLKVQVPFTE
Sbjct: 1135 FDQVVQRLSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNTAGYKTTFRSLKVQVPFTE 1194

Query: 5389 ATLLTPMKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGK 5568
            +TL+TPMKCFE AAEK HSD LG +VSSCSWGK+ A GTG++FQILW+  Q+ +N+  G 
Sbjct: 1195 STLITPMKCFEKAAEKCHSDSLGCVVSSCSWGKYAASGTGSSFQILWNESQLKSNKEYGD 1254

Query: 5569 DVYEFLDMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTK 5748
             +Y++L +VR    +   T   F  DVD L        VCLSPE         TFDDN +
Sbjct: 1255 GLYDYLALVRTDEEKARYT---FFDDVDYL-AEENETDVCLSPELEGTI-GQPTFDDNLE 1309

Query: 5749 VERAYADKRSFENWEGTKSRWEGITSSKCDIGSSQGWEKLDKSA-SPVHKPGIW--SSWD 5919
             E+ +    S+EN       WE   S+  D     GW      A + V K      S WD
Sbjct: 1310 -EQDFQKNNSWENGTAANGSWEQNGSAGDDSDKWGGWNAAAVGADTAVTKQADQEKSCWD 1368

Query: 5920 VDKVQQQPIESSKLEVERDGFCTWDSVRVKKADCLSGQSDAWNEFVTDRNVDRPEKLLVW 6099
            V          + +E     +  W + + K  + L  +    + ++  R++D  +  + W
Sbjct: 1369 V---------PAAVEKSSSDWGGWGTEKRKVKENLPEEPAEHDAWLAKRSMDGGD--INW 1417

Query: 6100 DAKPT-SSPTKHISDDSSFSKLDA-------------GAHESFNAADSLKSFGDTSKKPE 6237
              +P+ S   K   D  S+  +               G   ++N   S ++ G  + + +
Sbjct: 1418 GKQPSISDEFKKNVDQGSWGNMSLSAENRAWDKKKPDGGDATWNKQSSTQNDGGDTWEKQ 1477

Query: 6238 KGAWASIEMQ----DGW----AQRGVKGHERPLNIERWKEN-------RANDPRDQGW-- 6366
              AW   + +      W    +Q+G  G++   N    K++         ND +++ W  
Sbjct: 1478 PSAWKENKGRGSNGGSWEKSNSQKGSWGNDEAHNNANMKQDTWGSVTAHNNDTQNKSWGT 1537

Query: 6367 --------RSQGWG------SSN--SADPASHKNHSSRSPVTADDWKGWNTNKTFNFKGR 6498
                      + WG      S N  +A P S  N +S +      W+GWN+        R
Sbjct: 1538 VDAKANTSTEKSWGNVIASPSDNAWNAAPVSQGNENSDAK-QPGSWEGWNS-------AR 1589

Query: 6499 RSESFTPEEE 6528
              +S T ++E
Sbjct: 1590 ADDSSTKDKE 1599



 Score =  208 bits (530), Expect = 3e-50
 Identities = 132/383 (34%), Positives = 197/383 (51%), Gaps = 27/383 (7%)
 Frame = +1

Query: 5797 TKSRWEGITSSKCDIGSSQGWEKLDKSASPVHKPGIWSSWDVDKVQQQPIESSKLEVERD 5976
            T+  W  + +S  D   +          S   +PG W  W+  +      +SS  + E  
Sbjct: 1546 TEKSWGNVIASPSDNAWNAAPVSQGNENSDAKQPGSWEGWNSARAD----DSSTKDKEPW 1601

Query: 5977 G-------FCTWDSVRVKKAD-----CLSGQSDAWNEFVTDRNVDRPEKLLVWDAKPTSS 6120
            G       F  W++  V + D       SG  + WN    D +  + ++   WD    SS
Sbjct: 1602 GNVAASPSFNAWNAAPVSQGDESSDAKQSGSWEGWNSARADNSTTKDKE--PWDNVVASS 1659

Query: 6121 --------PTKHISDDSSFSKLDAGAHESFNA--ADSL-----KSFGDTSKKPEKGAWAS 6255
                    P  H  ++SS +K  +G+ E +N+  A+ L     +S+G+ +  P   AW +
Sbjct: 1660 SDNAWNAAPVCH-GNESSDAK-QSGSWEGWNSSRAEDLSRKDNESWGNVASSPSDSAWNA 1717

Query: 6256 IEMQDGWAQRGVKGHERPLNIERWKENRANDPRDQGWRSQGWGSSNSADPASHKNHSSRS 6435
              +         K   +P + + W  ++A++P ++ W+S GWG+          N     
Sbjct: 1718 APVSQENKNSDTK---QPGSWDGWNSSQADEPSNKDWKSDGWGARGGNWRGQRSNPGR-- 1772

Query: 6436 PVTADDWKGWNTNKTFNFKGRRSESFTPEEEKILVDVEPIMHSLRKILHDSSDGSRLSPE 6615
            P    D +G           RR    TPEEEKIL ++EPI+ S+RKI  +S DG RLS E
Sbjct: 1773 PPRKSDGRGPPRRPDDRGPPRRHFDLTPEEEKILGEIEPIVLSIRKIFRESIDGIRLSLE 1832

Query: 6616 DQSFIMENVFKHHPDKQAKVTNRIDYIMVDKHESFKDSRCFYVVSCDGSSADFSYLKCME 6795
            D+ FI ENV +HHP+KQ+KV+  ID+IMVDKH+ F+DSRC +V+S DG+ +DFSYLKCME
Sbjct: 1833 DEKFIKENVLEHHPEKQSKVSGEIDHIMVDKHQVFQDSRCLFVMSSDGTRSDFSYLKCME 1892

Query: 6796 NFVKENYPEHAESFNKKYFRRRR 6864
            N+V++ Y EH +SF KKYF+RRR
Sbjct: 1893 NYVRKTYTEHGDSFCKKYFKRRR 1915


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score = 1454 bits (3765), Expect = 0.0
 Identities = 777/1604 (48%), Positives = 1050/1604 (65%), Gaps = 55/1604 (3%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            MEDN PS  VLDG +  IKF +AT +EICT SI++S +SH SQL+NPFLGLPLE G+CES
Sbjct: 1    MEDNPPSS-VLDGTVVGIKFGMATRQEICTASISESSISHASQLSNPFLGLPLEFGRCES 59

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKI-GSSQAKETL 2190
            CGT+E  KCEGHFGY++LP P+YHP HI+ELK +L++VCL C++M+K K   SS      
Sbjct: 60   CGTSEVGKCEGHFGYVELPVPIYHPSHISELKRMLSVVCLNCLKMRKTKFPASSSGLAQR 119

Query: 2191 SYSSCLYCRDLQP--IAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNMC 2364
              S C  C+D+    ++I+EVKTSDGA  L L VS +SK++DGFW+FL+K+G+ +  +  
Sbjct: 120  LISPC--CQDVNAALVSIREVKTSDGACYLALKVS-KSKIHDGFWSFLEKYGYRYEGDET 176

Query: 2365 QSLLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXX 2544
            ++LLP E+++I+++IP ETKK+LAGKG+FPQDG++L+Y+PVPPNCL VPE          
Sbjct: 177  RALLPCEAMEIIKRIPIETKKKLAGKGFFPQDGYVLKYLPVPPNCLSVPEVSDGASVMSS 236

Query: 2545 XXXXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPH-ASRK 2721
                 +L+++L  +E IK SRSG PNF SH VE+  LQ+ + +Y ++RGT+K        
Sbjct: 237  DPSMTILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETH 296

Query: 2722 FIVGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFE 2901
            F V  E T  S K W EKM+TLFI KGSGFSSR+VITGD Y+ INE+GIP E+A+R+TFE
Sbjct: 297  FGVNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFE 356

Query: 2902 DRVTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFI 3081
            +RV   N+  LQ+LVD+ LCLTYK+G++ Y++  GSKGH YLK GQI++R+IMDGDIVFI
Sbjct: 357  ERVNIHNIRYLQKLVDEHLCLTYKEGVSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFI 416

Query: 3082 NRPPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVEL 3261
            NRPP+THKHSLQA  VY+H+DHTVKINPL+C PLGADFDGDC+HLFYPQSLAAKAEVVEL
Sbjct: 417  NRPPTTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 476

Query: 3262 FSVEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKS 3441
            F+VE QLLSSH+ NLNLQ   DSLLALK+  +  FL RA A QL+MFL   LP+PAL K+
Sbjct: 477  FAVENQLLSSHSGNLNLQLSTDSLLALKMLVKRCFLGRAAANQLAMFLLLPLPRPALLKA 536

Query: 3442 RNSGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXN 3621
             +    WT  Q+LQ  LP   DC G ++LIR+ EIL FDF+RDAL               
Sbjct: 537  SSDDACWTSIQILQGALPMGFDCTGGRYLIRQSEILEFDFSRDALPATINEIAASIFFGK 596

Query: 3622 GPKEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTY 3801
            GP EA++FF++LQP LME LF +GFSV+L +FS+ + +   +  S+ +   +L QLR  Y
Sbjct: 597  GPMEALKFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLLYQLRSLY 656

Query: 3802 NELVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGK 3981
            NELV  Q++ H++ +++P+++F LK + LGDLID+KS+S+I KV            DRG+
Sbjct: 657  NELVAQQLEKHIQDVELPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGR 716

Query: 3982 LYSKALVEDIFSHYVTKYSNGAEA-----YGLVKSSFFHGLNVFEELIHXXXXXXXXXXX 4146
             YSK LV+D+ SH+  K     +      YGL+K  FF+GL+ +EE++H           
Sbjct: 717  FYSKGLVDDVASHFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRS 776

Query: 4147 XXGLTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPV 4326
              GL+EPGTLFK LMAILRDVVICYDGTVRN+CSNSI+QFEY            PAGEPV
Sbjct: 777  SRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKTEHLFPAGEPV 836

Query: 4327 GVLAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGK 4506
            GVLAATA+SNPAYKAVLD+S  +NSSWELMKEILL +VN++N   DRRV+LYLNDC CG 
Sbjct: 837  GVLAATAMSNPAYKAVLDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGG 896

Query: 4507 NFCKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQV 4686
            + C+ENAA++V+N L++++L+  AV+F IEYQ+  T  E SET +GLVGHI+LD+M L+ 
Sbjct: 897  SCCRENAAYSVKNQLRKVSLKNAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEMMLEE 956

Query: 4687 LNKSTEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDHHGISSQLPCVQFTY 4866
            L  S   +  KC + +  + +KK  +++ ++ I LS SE CSS          PC+ F  
Sbjct: 957  LKISMANVFEKCLERLKSFSRKK-KVNQYLKNIELSFSESCSSS-----HPAAPCLTFWL 1010

Query: 4867 LNETEDFEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGEI 5046
             N   D +  +  ++  ICP+L +T++KGD R+ SA+IIWV  D+N+WVRN   +  GE+
Sbjct: 1011 KNHDSDLDNAVKVLSENICPVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGEL 1070

Query: 5047 ALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSVQ 5226
            AL++V+E+ AV+++GDAW+ + D+CLPVLHL+D+RRSIPY I+QIQELLGISC FDQ++Q
Sbjct: 1071 ALDIVLEEEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQ 1130

Query: 5227 RLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLTP 5406
            R++ S++ VAKGVL+EHLIL+A+SMTC G+L+GFN GG+KAL R L +QVPFT+ATL TP
Sbjct: 1131 RVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTP 1190

Query: 5407 MKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEFL 5586
             KCFE AAEK H+D L SIV+SCSWGKHVAVGTG+ F I+WD+ +I +NE+ G DVY FL
Sbjct: 1191 KKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFL 1250

Query: 5587 DMVR-ITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKV---- 5751
             MV+ +T+GE E TDAC G D+DDL        + +SP+ N  FE    F++N +V    
Sbjct: 1251 HMVKSVTNGE-EETDACLGEDIDDL-LEEEYMDLGMSPQHNSGFE--AVFEENPEVLNGS 1306

Query: 5752 ---------ERAYADKRSFENWEGT----------KSRWEGITSSKCDIGSSQGWEKLDK 5874
                      +  +    +  W  +          ++ W G T ++ D   S  W     
Sbjct: 1307 TSNGWDVSSNQTQSKTNEWSGWASSNKDGRSETAQENSW-GKTVNQEDSSKSNAWNTSTT 1365

Query: 5875 SASPVHKPGIWSSWDVDKVQQQPIESSKLEVERDGFCTWDSVRVKKADCLSGQSDAWNEF 6054
            +     K   WS W  +K  + P   SK  V+ D                S +S+AWN  
Sbjct: 1366 ADQTKTKSNEWSDWGSNK-SEIPAGGSK-AVQED----------------SSKSNAWNTS 1407

Query: 6055 VT-DRNVDRPEKLLVWDAKPTSSP---TKHISDDSSFSKLDAGAHESFNAADSLKSFGDT 6222
             T ++   + ++   W +  +  P   +K + +DSS S        +   AD  K     
Sbjct: 1408 TTSNQTKTKSKEWSAWGSNKSEIPACGSKAVQEDSSKS----NTWNTSTTADQTK----- 1458

Query: 6223 SKKPEKGAWASIEMQ-DGWAQRGVKGHERPLNIERW-KENRANDPRDQGWRSQGWGSSNS 6396
            +K  E  AW S + +      + V+      N   W +   A+  + +      WGS+ S
Sbjct: 1459 TKSNEWSAWGSNKSEIPAGGSKAVQEDSSKSN--AWNRSTTADQTKTKSNEWSAWGSNKS 1516

Query: 6397 ADPA---------SHKNHSSRSPVTAD-------DWKGWNTNKT 6480
              PA         S K+++  +  TAD       +W  W +NK+
Sbjct: 1517 EIPAGGSKAVQEDSSKSNAWNTSTTADQTKTKSNEWSAWGSNKS 1560



 Score =  169 bits (429), Expect = 1e-38
 Identities = 122/372 (32%), Positives = 181/372 (48%), Gaps = 39/372 (10%)
 Frame = +1

Query: 5869 DKSASPVHKPGIWSSWDVDK--VQQQPIESSKLEVERDGFCTWDSVRVKKADCLSGQSDA 6042
            D +A+   K   WS W   K   Q+  ++ S    +R    T +          SG  D 
Sbjct: 1638 DANAADQTKSNEWSGWGKKKDVTQEDNVQHSWGSGKRKDKVTQEDN--------SGSGD- 1688

Query: 6043 WNEFVTDRNVDRPEKLLVWDAKPTSSP---TKHISDDS-SFSKLD--------AGAHESF 6186
            W    TD  + +  +   W    T  P   + ++ +DS    KL+         GA    
Sbjct: 1689 WGANRTDLAITKSSEWSSWGKNKTEIPAGGSANVQNDSWGLGKLNDTQKDNSGCGAWGEN 1748

Query: 6187 NAADSLKSFGDT----SKKPEKGAWASIEMQDGWAQRGVKGHE---RPLNIER--W-KEN 6336
            + +  +++  +T    S+KP++ AW S      W      G+    +P + E   W   N
Sbjct: 1749 SGSAWVRNKAETIDGGSEKPQEDAWNS----GNWKAESKVGNTTWGKPKSSESHAWDSHN 1804

Query: 6337 RAN-DPRDQGWRSQ------------GWGSSNSADPASHKNHSSRSPVTADDWKGWNTNK 6477
            ++N +   QGW S              WG    +   +    S      A DWK  N N+
Sbjct: 1805 QSNQNSSSQGWESHIASANSENEKGFQWGKGRDSFKKNRFEGSQGRGSNAGDWK--NRNR 1862

Query: 6478 TFNFKGRRSESFTPEEEKILVDVEPIMHSLRKILHDS--SDGSRLSPEDQSFIMENVFKH 6651
                 G+R + ++ EE+ +L D+EPIM S+R+I+     SDG  L+ EDQ F++ENVF+H
Sbjct: 1863 PPRAPGQRLDIYSSEEQDVLKDIEPIMQSIRRIMQQQGYSDGDPLAAEDQLFVLENVFEH 1922

Query: 6652 HPDKQAKVTNRIDYIMVDKHESFKDSRCFYVVSCDGSSADFSYLKCMENFVKENYPEHAE 6831
            HPDK+ K+   IDY+MV+KH SF++SRCFYVV  DG S DFSY KC+ N++ + YP+ AE
Sbjct: 1923 HPDKETKMGAGIDYVMVNKHSSFQESRCFYVVCKDGQSKDFSYRKCLANYISKKYPDLAE 1982

Query: 6832 SFNKKYFRRRRA 6867
            SF  KYFR+ RA
Sbjct: 1983 SFLGKYFRKPRA 1994


>ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Brachypodium
            distachyon]
          Length = 1935

 Score = 1454 bits (3764), Expect = 0.0
 Identities = 773/1568 (49%), Positives = 1031/1568 (65%), Gaps = 48/1568 (3%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            ME++  + LV +G I+SIK SL+T +EI TYSIND PV+HPSQL NPFLGLPLE+GKCES
Sbjct: 1    MEEDQSAVLVAEGAIKSIKLSLSTEDEILTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKIGSSQAKETLS 2193
            CG +E  KCEGHFGYI+LP P+YHP H++EL+ +L+LVCLKC+R+KK K           
Sbjct: 61   CGASENGKCEGHFGYIELPVPIYHPCHVSELRQLLSLVCLKCLRIKKGK----------- 109

Query: 2194 YSSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGD-NMCQS 2370
                    D+  +++KEVKT+DGAF LEL    R  + D  WNFLDK+GFHHG  +  ++
Sbjct: 110  --------DVPALSLKEVKTADGAFRLELRAPPRRLMKDSSWNFLDKYGFHHGGASHFRT 161

Query: 2371 LLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXXX 2550
            LLP E+L IL+KIP++T+K+LA +GY  Q G++++Y+PVPPNCLY+PE            
Sbjct: 162  LLPEEALNILKKIPDDTRKKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 221

Query: 2551 XXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPHASRKFIV 2730
               LLK++L  IE IKKSR+G PNF SHE ES  LQ SI++Y+ LRGTTK P  +++F +
Sbjct: 222  SISLLKKILHRIEQIKKSRAGTPNFESHEAESSDLQISIAQYIHLRGTTKGPQDTKRFTI 281

Query: 2731 GTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDRV 2910
             T+++  S KQW EKM+TLFISKGSGFSSRSV+TGD Y G++ +G+P E+AKR+TFE++V
Sbjct: 282  STDSSHLSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVVGLPSEVAKRITFEEQV 341

Query: 2911 TEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINRP 3090
            T+ N+ RLQE+VDK LCLTY+DG T YAI+VGSKG+T LKVGQ I+R+I+DGD+VF+NRP
Sbjct: 342  TDINIKRLQEVVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDVVFLNRP 401

Query: 3091 PSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFSV 3270
            PSTHKHSLQAF VY+HDDHTVKINPL+C+PL ADFDGDC+H++YPQSLAAKAE +ELFSV
Sbjct: 402  PSTHKHSLQAFYVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELFSV 461

Query: 3271 EKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRNS 3450
            EKQL +SHN  +NLQ  NDSLLALK     T L++  A QL+M LS  LP PA+ K +  
Sbjct: 462  EKQLTNSHNGKVNLQLSNDSLLALKHMSSRTVLSKESANQLAMLLSFSLPDPAVVKLK-- 519

Query: 3451 GPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGPK 3630
             P WTI+Q++Q  LP  + C G + L++   +++ D  ++++               GP 
Sbjct: 520  -PCWTITQIIQGALPAALTCEGGRFLVKDSTVIKLDLAKESVQASFSDLVSSILCVKGPG 578

Query: 3631 EAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNEL 3810
             A+QF N LQPLLME L LDGFSV+L+DF+VPK ++E++  S+QE   VL Q R + ++ 
Sbjct: 579  GALQFLNALQPLLMEYLLLDGFSVSLQDFNVPKVLLEEVHKSIQEQSLVLEQSRCSKSQF 638

Query: 3811 VDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLYS 3990
            V+++VDN+L+ +K  +  F+++ S LG LID KSE S++KV              GK YS
Sbjct: 639  VEMRVDNNLKDVKQQISDFVVESSHLGLLIDPKSEPSMSKVVQQLGFVGLQLYREGKFYS 698

Query: 3991 KALVEDIFSHYVTKY------SNGAEAYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXXX 4152
              LVED FS +V K+       +  EAYGLV++S+FHGLN +EEL+H             
Sbjct: 699  SRLVEDCFSSFVDKHPPIVGNQHPPEAYGLVQNSYFHGLNPYEELVHSISTREAIVRSSR 758

Query: 4153 GLTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPVGV 4332
            GLTEPGTLFK LMAILRDVVICYDGTVRN+CSNSI+Q +Y  +   ++      GEPVGV
Sbjct: 759  GLTEPGTLFKNLMAILRDVVICYDGTVRNICSNSIMQLKYNEDDATDIPSALTPGEPVGV 818

Query: 4333 LAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKNF 4512
            LAATAISNPAYKAVLD+SQ+ N+SW  MKEIL ++V+YKN  +DR+V+L+LNDC C K F
Sbjct: 819  LAATAISNPAYKAVLDASQSNNTSWASMKEILQTKVSYKNDTNDRKVILFLNDCSCPKKF 878

Query: 4513 CKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVLN 4692
            CKE AA  VQN LKR+TL +CA D  IEY K I     SE    LVGHIHL+K RL ++N
Sbjct: 879  CKEKAAIAVQNRLKRVTLEDCATDICIEYHKQI-LDGSSEATPALVGHIHLEKARLDMIN 937

Query: 4693 KSTEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDH--HGISSQLPCVQFTY 4866
             STE+I++KC++V   + KKKGHL  + ++I  S  +C  ++     G   ++PC+QF++
Sbjct: 938  VSTEDILQKCQEVSLKHGKKKGHLGHLFKKITFSTCDCSFTQKPMIDGKLPKVPCLQFSF 997

Query: 4867 LNE----TEDFEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTL 5034
              +    +E  E+ +  +AN +C +LLDT++KGD R+  A I+WVG+D+ SWV+N+    
Sbjct: 998  SEDIPMLSESVERAVSVLANSLCDVLLDTIIKGDPRIQEAKIMWVGSDAQSWVKNTRKVS 1057

Query: 5035 KGEIALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFD 5214
            KGE  +E+V+EKN   K GDAW+   DAC+PV+ L+D+RRSIPYGIQQ++ELLGISC+FD
Sbjct: 1058 KGEPTVEIVVEKNEASKQGDAWRIAMDACIPVIDLIDTRRSIPYGIQQVRELLGISCSFD 1117

Query: 5215 QSVQRLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEAT 5394
            Q VQRLST+++ VAKG+LK+HLILVANSMTCTG+L GFN GG++A FR+LKVQVPFTE+T
Sbjct: 1118 QIVQRLSTTMKTVAKGILKDHLILVANSMTCTGNLYGFNTGGYRATFRALKVQVPFTEST 1177

Query: 5395 LLTPMKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDV 5574
            L TPMKCFE AAEK HSD LG +VSSCSWGKH A+GTG++FQILW+  Q+ +N+  G  +
Sbjct: 1178 LFTPMKCFEKAAEKCHSDALGCVVSSCSWGKHAALGTGSSFQILWNENQLKSNKEYGDGL 1237

Query: 5575 YEFLDMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVE 5754
            Y+FL MVR    +   T   F  DVD L        +CLSPE N       TF+DN +  
Sbjct: 1238 YDFLAMVRTDQEKARYT---FLDDVDYLVEDNAMDDICLSPELN-GTHGVPTFEDNFE-- 1291

Query: 5755 RAYADKRSFENWE-GTKSR--WEGITSSKCDIGSSQGWEKLDKSA-SPVHKPGIW--SSW 5916
              + D ++  +WE GTK+   WE   S+  D  +  GW     +A +   KP     SSW
Sbjct: 1292 --HQDTQNGNSWENGTKANASWEQNASAGNDSDNWGGWSNAAAAADTGAAKPADQGNSSW 1349

Query: 5917 DVDKV------------QQQPIESSKLEVERDGFCTWDSVRVKKADCLSGQSDAWNEFV- 6057
            DV                ++  ++  +  E     TW     KK     G   +W +   
Sbjct: 1350 DVPATAENDSTDWGGWGNEKAKDNRTVSTEPAELDTWSDRGAKKG--TDGGGGSWGKQTN 1407

Query: 6058 ----TDRNVDRPEKLLVWDAKPTSSPTKHISDDSSFSKLDAGAHESFNAADSLK------ 6207
                +  N++R      W  +P+S      +  +S    D G       A+S K      
Sbjct: 1408 TCEDSGTNLERNS----WAKRPSSPSLSTWAKKNS----DGGDGTWDKQANSCKKNVEQD 1459

Query: 6208 SFGDTSKKPEKGAWASIEMQDG---WAQRGVKGHERPL---NIERWKENRANDPRDQGWR 6369
            S+ +    P + AW   E   G   W  R     E+     N   W+++ A   +   W 
Sbjct: 1460 SWKNMPVSPARNAWNKKESSRGDATWEMRASTLEEKKTSESNEGSWEKSNA---QKDSWG 1516

Query: 6370 SQGWGSSN 6393
            +   GSS+
Sbjct: 1517 NTQHGSSD 1524



 Score =  154 bits (390), Expect = 4e-34
 Identities = 124/425 (29%), Positives = 195/425 (45%), Gaps = 34/425 (8%)
 Frame = +1

Query: 5689 LSPETNMAFEDDTTFDDNTKVERAYA--DKRSFENWEGTKSRWEGITSSKCDIGSSQGWE 5862
            +SP  N   + +++  D T   RA    +K++ E+ EG+   WE   + K   G++Q   
Sbjct: 1466 VSPARNAWNKKESSRGDATWEMRASTLEEKKTSESNEGS---WEKSNAQKDSWGNTQHGS 1522

Query: 5863 KLDKSASPVHKPGIWSSWDVDKVQQQP---IESSKLEVERDGFCTWDSVRVKK----ADC 6021
              DK A            D D +QQ P   I +  +  + D    W SV  K     A+ 
Sbjct: 1523 S-DKMAVK----------DND-MQQDPWGHIATQNINAQDD---LWGSVAAKAQTSTAEN 1567

Query: 6022 LSGQSDAWNEFVTDR----------NVDRPEKLLVWDAKPTSSPTKHISDDSSFSKLDAG 6171
               Q D+W                 NV        W A P S  +     D+        
Sbjct: 1568 TDAQDDSWGAVAAKAQTSTAQESWGNVAASPSDNAWKAPPISQTSAAEHTDAHNDSWGIV 1627

Query: 6172 AHESFNAADSLKSFGDTSKKPEKGAWASIEMQ---------DGWAQRGVKGHERPLNIER 6324
            A ++  +    +S+G+ +  P   AW +  M          DGW+    +          
Sbjct: 1628 AAKAQTSTAQQESWGNATASPSDNAWNAAPMDLDAKQPGSWDGWSSALAED--------- 1678

Query: 6325 WKENRANDP--RDQGWRSQGWGSSNSADPASHKNHSSRSPVTADDWKGWNTNKTFNFKGR 6498
               N+A+D   +++GW+S GWG+  +      +++ S  P+  D+            +  
Sbjct: 1679 --SNKADDSSNKNKGWKSDGWGAKGNR--RDQRDNPSMPPMRPDE------------RPP 1722

Query: 6499 RSESFTPEE-EKILVDVEPIMHSLRKILHDSSDGSRLSPEDQSFIMENVFKHHPDKQAKV 6675
            R     P E +KIL ++EPI+  +RKI  +S DG RL  ED+ FI E++ +HHP+K+ KV
Sbjct: 1723 RPRFEVPAEAKKILREIEPIVSMVRKIFRESCDGVRLPLEDEKFIKESILEHHPEKERKV 1782

Query: 6676 TNRIDYIMVDKHESFKDSRCFYVVSCDGSSADFSYLKCMENFVKENY---PEHAESFNKK 6846
               ID+IMV+KH  F++SRCFYVV  DG+  DFSY KCM+N+V++ Y    EHA+  ++ 
Sbjct: 1783 PGEIDHIMVNKHHIFQESRCFYVVLADGTHTDFSYNKCMDNYVRKTYTDAAEHADLVSQM 1842

Query: 6847 YFRRR 6861
            YF++R
Sbjct: 1843 YFKKR 1847


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score = 1452 bits (3758), Expect = 0.0
 Identities = 782/1626 (48%), Positives = 1046/1626 (64%), Gaps = 78/1626 (4%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            MEDN PS  VLDG +  IKF +AT +EICT SI+DS +SH SQL+NPFLGLPLE G+CES
Sbjct: 1    MEDNPPSS-VLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCES 59

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKI-GSSQAKETL 2190
            CGT+E  KCEGHFGYI+LP P+YHP HI++LK +L++VCL C++++K K+  SS      
Sbjct: 60   CGTSEVGKCEGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLRKTKLPASSSGLAQR 119

Query: 2191 SYSSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNMCQS 2370
              S C        ++I+EVKTSDGA  L L VS +SK+ +GFW+FL+K+G+ +G +  ++
Sbjct: 120  LISPCCQEDKAALVSIREVKTSDGACYLALKVS-KSKMQNGFWSFLEKYGYRYGGDHTRA 178

Query: 2371 LLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXXX 2550
            LLP E+++I+++IP ETKK+LAGKGYFPQDG++L+Y+PVPPNCL VPE            
Sbjct: 179  LLPCEAMEIIKRIPIETKKKLAGKGYFPQDGYVLKYLPVPPNCLSVPEVSDGVSVMSSDP 238

Query: 2551 XXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPH-ASRKFI 2727
               +L+++L  +E IK SRSG PNF SH VE+  LQ+ + +Y ++RGT+K        F 
Sbjct: 239  SITILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFG 298

Query: 2728 VGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDR 2907
            V  E T  S K W EKM+TLFI KGSGFSSR+VITGD Y+ INE+GIP E+A+R+TFE+R
Sbjct: 299  VNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEER 358

Query: 2908 VTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINR 3087
            V   N+  LQ+LVD+ LCLTYK+G + Y++  GSKGH YLK GQI++R+IMDGDIVFINR
Sbjct: 359  VNIHNIRYLQKLVDEHLCLTYKEGGSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINR 418

Query: 3088 PPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFS 3267
            PP+THKHSLQA  VY+H+DHTVKINPL+C PLGADFDGDC+HLFYPQSLAAKAEVVELFS
Sbjct: 419  PPTTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 478

Query: 3268 VEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRN 3447
            VE QLLSSH+ NLNLQ   DSLL+LK+  +  F +RA A QL+MF+   LP+PAL K+ +
Sbjct: 479  VENQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPALLKASS 538

Query: 3448 SGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGP 3627
                WT  Q+LQ  LP   DC G ++LIR+ EIL F+F+RD L               GP
Sbjct: 539  GDACWTSIQILQCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVFFGKGP 598

Query: 3628 KEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNE 3807
            KEA+ FF++LQP LME LF +GFSV+L +FS+ + +   +  S+ ++  +L QLR  YNE
Sbjct: 599  KEALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNE 658

Query: 3808 LVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLY 3987
            LV  Q++ H+R +++P+++F LK + LGDLID+KS+S+I KV            DRG+ Y
Sbjct: 659  LVAQQLEKHIRDVELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFY 718

Query: 3988 SKALVEDIFSHYVTKYSNGAEA-----YGLVKSSFFHGLNVFEELIHXXXXXXXXXXXXX 4152
            SK LV+D+ SH+  K     +      YGL+K  FF+GL+ +EE++H             
Sbjct: 719  SKGLVDDVASHFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSR 778

Query: 4153 GLTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPVGV 4332
            GL+EPGTLFK LMAILRDVVICYDGTVRN+CSNSI+QFEY            PAGEPVGV
Sbjct: 779  GLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGV 838

Query: 4333 LAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKNF 4512
            LAATA+SNPAYKAVLD+S ++NSSWELMKEILL +VN++N   DRRV+LYLNDC CG ++
Sbjct: 839  LAATAMSNPAYKAVLDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSY 898

Query: 4513 CKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVLN 4692
            C+ENAA++V++ L++++L++ AV+F IEYQ+  T  E SET  GLVGHI+LD+M L+ L 
Sbjct: 899  CRENAAYSVKDQLRKVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELK 958

Query: 4693 KSTEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDHHGISSQLPCVQFTYLN 4872
             S   +  KC + +  + +KK  +++ ++ I LS SE CSS          PC+ F   N
Sbjct: 959  ISMAYVFDKCHERLKSFSQKK-KVNQSLKNIELSFSESCSSS-----HPAAPCLTFWLKN 1012

Query: 4873 ETEDFEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGEIAL 5052
               D +  +  +A  ICP+L  T+++GD R+ SA+IIWV  D+N+WVRN   +  GE+AL
Sbjct: 1013 YDSDLDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELAL 1072

Query: 5053 EVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSVQRL 5232
            ++++EK AV+++GDAW+ + DACLPVLHL+D+RRSIPY I+QIQELLGISC FDQ++QR+
Sbjct: 1073 DIILEKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRV 1132

Query: 5233 STSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLTPMK 5412
            + S++ VAKGVL+EHLIL+A+SMTC G+L+GFN GG+KAL R L +QVPFT+ATL TP K
Sbjct: 1133 AASVKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKK 1192

Query: 5413 CFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEFLDM 5592
            CFE AAEK H+D L SIV+SCSWGKHVAVGTG+ F ++WD  +I +NE+ G DVY FL M
Sbjct: 1193 CFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFLHM 1252

Query: 5593 VRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVERAYADK 5772
            V+  +   E TDAC G D+DDL        + +SP+ N  FE    F++N +V       
Sbjct: 1253 VKSFTNGEEETDACLGEDIDDL-LEEEYMDLGMSPQHNSGFE--AVFEENPEVLNGSTSN 1309

Query: 5773 R---SFENWEGTKSRWEGITSS--------KCDIGSSQGWEKL----DKSAS-------- 5883
                S    E   + W G  SS        + +I     W K     D S S        
Sbjct: 1310 GWDVSSNQGESKTNEWSGWASSNKAEIKDGRSEIAPKNSWGKTVNQEDSSKSNPWSTSTI 1369

Query: 5884 ---PVHKPGIWSSWDVDKVQQQPI---ESSKLEVERDGFC------TWDSVRVKKADCLS 6027
                  K   WS+W  +K  + P+    S+K E+ +DG        +W    V + D  S
Sbjct: 1370 ADQTKTKSNEWSAWGSNK-SEIPVGWASSNKTEI-KDGRSETAQENSWGKT-VNQED--S 1424

Query: 6028 GQSDAWNEFVT-DRNVDRPEKLLVWDAKPTSSP---TKHISDD---SSFSKLDAGAHES- 6183
             +S+AWN   T D    +  +   W +  +  P   +K + +D   SS  K D    ++ 
Sbjct: 1425 SKSNAWNTSTTVDHANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQEDNS 1484

Query: 6184 ------FNAADSLKS--FGDTSKKPE--------KGAWASIEMQ-------DGWAQRGVK 6294
                   NAAD  KS  +    KK +         GAW +            GW ++   
Sbjct: 1485 RLGAWDANAADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKKDI 1544

Query: 6295 GHERPLNIERWKENRANDPRDQGWRSQGWGSSNSADPASHKNHSSRSPVTAD-----DWK 6459
              E    +  W  N A+  +   W   GWG         +    +    TAD     +W 
Sbjct: 1545 TQEDNSRLGAWDANAADQTKSSEW--SGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWS 1602

Query: 6460 GWNTNK 6477
            GW   K
Sbjct: 1603 GWGKKK 1608



 Score =  167 bits (422), Expect = 9e-38
 Identities = 121/413 (29%), Positives = 197/413 (47%), Gaps = 31/413 (7%)
 Frame = +1

Query: 5722 DTTFDDNTKV---ERAYADKRSFENWEGTKSRWEGITSSKCDIGSSQGWEKLDKSASPVH 5892
            + T +DN++    +    D+     W G   + +        +G+   W   D +A+   
Sbjct: 1642 EVTQEDNSRFGAWDANAEDQTKSNEWSGWGKKKDVTQEDNSRLGA---W---DANAADQT 1695

Query: 5893 KPGIWSSWDVDK--VQQQPIESSKLEVERDGFCTWDSVRVKKADCLSGQSDAWNEFVTDR 6066
            K   WS W   K   Q+  ++ S    +R    T +          +  S  W    TD 
Sbjct: 1696 KSNEWSDWGKKKEVTQEDNVQDSWGSGKRKDKVTQED---------NSGSGGWGANRTDL 1746

Query: 6067 NVDRPEKLLVWDAKPTSSP---TKHISDDSSFS-KLDAGAHESFNAADSLKSFGDT---- 6222
               +  +   W    +  P   ++++ +DS  S KL+    +  + +  +++  +T    
Sbjct: 1747 AKSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETIDGG 1806

Query: 6223 SKKPEKGAWASIEMQ-DGWAQRGVKGHERPLNIERW-KENRAN-DPRDQGWRSQ------ 6375
            S+KP++ AW S   + +        G  +    + W   N++N +   QGW S       
Sbjct: 1807 SEKPQEDAWNSGNWKAESKVGNASWGKPKSSESQAWDSHNQSNQNSSSQGWESHIASANS 1866

Query: 6376 ------GWGSSNSADPASHKNHSSRSPVT-ADDWKGWNTNKTFNFKGRRSESFTPEEEKI 6534
                   WG         ++   S+   + A DWK  N N+     G+R + ++  E+ +
Sbjct: 1867 ESEKGFQWGKQGRDSFKKNRFEGSQGRGSNAGDWK--NRNRPPRAPGQRLDIYSSGEQDV 1924

Query: 6535 LVDVEPIMHSLRKILHDS--SDGSRLSPEDQSFIMENVFKHHPDKQAKVTNRIDYIMVDK 6708
            L D+EPIM S+R+I+     +DG  L+ EDQ F++ENVF+HHPDK+ K+   IDY+MV+K
Sbjct: 1925 LKDIEPIMQSIRRIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKETKMGTGIDYVMVNK 1984

Query: 6709 HESFKDSRCFYVVSCDGSSADFSYLKCMENFVKENYPEHAESFNKKYFRRRRA 6867
            H SF++SRCFYVV  DG S DFSY KC+ N++ + YP+ AESF  KYFR+ RA
Sbjct: 1985 HSSFQESRCFYVVCKDGESKDFSYRKCLANYISKKYPDLAESFLGKYFRKPRA 2037


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score = 1452 bits (3758), Expect = 0.0
 Identities = 782/1598 (48%), Positives = 1053/1598 (65%), Gaps = 45/1598 (2%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            ME+N  S  +L+G I  I+F LAT +EICT SI+D  +SH SQL NPFLGLPLE GKCES
Sbjct: 1    MEENT-SSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES 59

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMK--KLKIGSSQAKET 2187
            CGT+E  KCEGHFGYI+LP P+YHP HI+ELK++L+L+CLKC++MK  K +I +    + 
Sbjct: 60   CGTSEPGKCEGHFGYIELPIPIYHPSHISELKHMLSLLCLKCLKMKSTKFQIKNDGVAQR 119

Query: 2188 LSYSSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNMCQ 2367
            L  SSC  C +   ++I +VKT+DGAF LEL + S+ +L  GFWNFL+++GF +GD++ +
Sbjct: 120  L-LSSC--CEEASQVSIVDVKTTDGAFYLELKLPSKFRLCAGFWNFLERYGFRYGDSLTR 176

Query: 2368 SLLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXX 2547
            +LL SE  ++L++IPEET+K+LAGKGYFPQDG+IL+Y+PVPPNCL VP+           
Sbjct: 177  TLLASEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSD 236

Query: 2548 XXXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPHASRKFI 2727
                +LK+VL  +E I+ SRSG PNF S EVES  LQ ++ +Y+ +RGT K         
Sbjct: 237  LSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARF 296

Query: 2728 VGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDR 2907
              ++  + + K W EKM+TLFI KGSGFSSRSVITGDAY+ +NEIG+P EIA+R+TFE+R
Sbjct: 297  GVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEER 356

Query: 2908 VTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINR 3087
            V   N++ LQELVD +LCLTY DG + Y++  GSKGHT+L+ GQ+++R+IMDGD VFINR
Sbjct: 357  VNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINR 416

Query: 3088 PPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFS 3267
            PP+THKHSLQA SVYVHDDHTVKINPL+C PL ADFDGDCIHLFYPQSLAAKAEV+ELFS
Sbjct: 417  PPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFS 476

Query: 3268 VEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRN 3447
            VEKQLLSSHN NLNLQ   D+LL+LKV F+  FL++A  QQL+MF  S LP+PAL K+R 
Sbjct: 477  VEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARC 536

Query: 3448 SGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGP 3627
            S   WT  Q+LQSVLP   D  G+++LI++ E+L+ DF+RD +               GP
Sbjct: 537  SAR-WTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGP 595

Query: 3628 KEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNE 3807
            +E ++FF+ LQPLLME LF DGFSV+L DFS+ K  + +++  +Q +  +L     T NE
Sbjct: 596  EEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNE 655

Query: 3808 LVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLY 3987
            LVD+Q++NH+R +K+ +  FILK S LG LID+KS+S+++KV            DRGK Y
Sbjct: 656  LVDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFY 715

Query: 3988 SKALVEDIFSHYVTKY----SNGAEAYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXXXG 4155
            SK LVEDI SH+   Y    +     YGL+K  FFHGL+ +EE+ H             G
Sbjct: 716  SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 775

Query: 4156 LTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFN-REGNVLCDPPAGEPVGV 4332
            L+EPGTLFK LMA+LRDVVICYDGTVRNVCSNSI+QF+YA N R+ + L   PAGEPVGV
Sbjct: 776  LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLF--PAGEPVGV 833

Query: 4333 LAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKNF 4512
            LAATA+SNPAYKAVLDSS ++N+SWELMKEILL RV++ N   DRRV+LYLNDC CG+ +
Sbjct: 834  LAATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKY 893

Query: 4513 CKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVLN 4692
            C+E AA+ V+N LKR++L++ AV+F IEY+K     E      GLVGHIHL+K+ L+ L 
Sbjct: 894  CQERAAYMVKNQLKRVSLKDAAVEFLIEYKK----PEIISDDEGLVGHIHLNKILLEDLR 949

Query: 4693 KSTEEIVRKCKDVISGYCKKKGHLSKVME---RIHLSASECCSSEDHHGIS-SQLPCVQF 4860
             S  +I+ KC++ +  +CKKK  + KV++      LS SECCS +       S +PC+ F
Sbjct: 950  ISMHDILPKCQETLKSFCKKK-KMKKVVQFFKNTSLSVSECCSFQQSCADKRSNMPCLMF 1008

Query: 4861 TYLNETEDF-EKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLK 5037
                 ++ + +K    +AN+I P+LL+T++KGD R++SANIIW+  D+ +W+RN     K
Sbjct: 1009 VLRGASDSYLDKLSGVLANMIYPVLLETIIKGDPRIYSANIIWISPDTTAWIRNPSKNRK 1068

Query: 5038 GEIALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQ 5217
            GE+AL+VV+EK+ V+++GDAW+T+ D+CLPV HL+D+RRS+PY I+Q+QELLG+SCAF+Q
Sbjct: 1069 GELALDVVLEKSVVKQSGDAWRTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQ 1128

Query: 5218 SVQRLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATL 5397
            +VQRLS S+  VAKGVLKEHLIL+ANSMTC G L+GFN GG+KAL RSL VQVPFTEATL
Sbjct: 1129 AVQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATL 1188

Query: 5398 LTPMKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVY 5577
             TP KCFE AAEK H+D L S+V++CSWGKHVAVGTG+ F +LW  +    N+  G DVY
Sbjct: 1189 FTPRKCFEKAAEKCHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVY 1248

Query: 5578 EFLDMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVER 5757
            +FL MVR ++G  E    C G +VD L          LSPE N+   D   F+D  + + 
Sbjct: 1249 DFLHMVRSSTGIEESDTGCLGEEVDGLEDEFDW---SLSPEHNLC-SDKPVFEDLVEDQS 1304

Query: 5758 AYADKRSFENWE-------GTKSRWEGITSSKCDIGSSQGW-----------EKLDKSAS 5883
               +K+   NW+        ++ +WE + +S      S GW           +KL+K+ S
Sbjct: 1305 WLENKQENANWDSEADCRKSSEDKWEKLGTSL--EKPSSGWRTEGAWGKSSDDKLEKAGS 1362

Query: 5884 PVHKPGIWSSWDVDKVQQQPIESSKLEVERDGFCTWDSVRVKKADCLS--GQSDAWNEFV 6057
            P  KP  W +           E+S  E   D    W++V    A   S  G   +W +  
Sbjct: 1363 PSRKPSGWGT-----------EASWGESSCD---KWENVGSPAAKSFSEWGTEASWGKSF 1408

Query: 6058 TDRNVDRPEKLLVWDAKPTSSPTKHISDDSSFSKLDAGAHESFNAADS--------LKSF 6213
                 D+PE     +  P +  +     ++S+ K      E+   + S          S+
Sbjct: 1409 G----DKPE-----NVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASW 1459

Query: 6214 GDTSK-KPEKGAWASIEMQDGWAQRGVKGHERPLNIERWKENRANDPRDQGWRSQGWGSS 6390
            G +S+ K E+      +    W           + +E+      N     GW ++   S 
Sbjct: 1460 GKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPL--SGWGTEAQDSG 1517

Query: 6391 NSADPASHKNHSSRSPV----TADDWKGWNTNKTFNFK 6492
             S+D +  K+H++ +       +++  GW+T  ++  K
Sbjct: 1518 KSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTK 1555



 Score =  157 bits (397), Expect = 7e-35
 Identities = 101/246 (41%), Positives = 134/246 (54%), Gaps = 2/246 (0%)
 Frame = +1

Query: 6136 SDDSSFSKLDAGAHESFNAADSLKSFGDTSKKPEKGAWASIEMQDGWAQRGVKGHERPLN 6315
            +DDSS+ K     +ES   A S     +    P+    +  EMQ       V G  R   
Sbjct: 1630 TDDSSWGKQKHTENESPQPASS-----NAWDLPDATGGSETEMQ-------VWGQSRK-- 1675

Query: 6316 IERWKENRANDPRDQGWRSQGWGSSNSADPASHKNHSSRSPVTADDWKGWNTNKTFNFKG 6495
             E +K+NR            GW SS S +    KN   RSP   +D      N  +    
Sbjct: 1676 -EPFKKNR------------GWASS-SGEWKGKKNRPPRSPGVVNDDS--TVNAMYTVTR 1719

Query: 6496 RRSESFTPEEEKILVDVEPIMHSLRKILHDS--SDGSRLSPEDQSFIMENVFKHHPDKQA 6669
            +R + FT EE+ IL  VEPIM S+R+I+H S  +DG RLS +D+SFI +NVF +HPDK  
Sbjct: 1720 QRLDMFTSEEQDILSHVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAM 1779

Query: 6670 KVTNRIDYIMVDKHESFKDSRCFYVVSCDGSSADFSYLKCMENFVKENYPEHAESFNKKY 6849
            K+   ID+  VDKH SF+DSRC +VVS DGS  DFSY KC+E+F++  YP+  + F  KY
Sbjct: 1780 KMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKY 1839

Query: 6850 FRRRRA 6867
            FRR R+
Sbjct: 1840 FRRPRS 1845


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score = 1447 bits (3745), Expect = 0.0
 Identities = 766/1578 (48%), Positives = 1032/1578 (65%), Gaps = 33/1578 (2%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            ME+      +LD  I  I+FSLA  +EIC  +I+D P++H SQL+NPFLGLP+E GKCES
Sbjct: 1    MEEAPSCSSILDAEIVGIRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCES 60

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLK-IGSSQAKETL 2190
            CGT+E  KCEGHFGYI+LP P+YHP HI ELK +L+L+CLKC++MKK K IG ++     
Sbjct: 61   CGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKTKNIGFAERL--- 117

Query: 2191 SYSSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNMCQS 2370
              SSC  C D   + I+E K +DGA  L+L V SR+ L + FW+FL+++GF +GDN  ++
Sbjct: 118  -LSSC--CEDASQVTIREAKKADGASYLQLKVPSRTSLQERFWDFLERYGFRYGDNFTRT 174

Query: 2371 LLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXXX 2550
            LLP E  ++L+KIP ET+K+LAG+GY+PQDG+ILQY+PVPPNCL VPE            
Sbjct: 175  LLPCEVKEMLKKIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVTVMSSDP 234

Query: 2551 XXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPHA-SRKFI 2727
               +LK++L  +E IK SRSGAPNF SHEVE+  LQ ++ +Y+++RGT K       +F 
Sbjct: 235  AVSMLKKILKQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRGIDARFG 294

Query: 2728 VGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDR 2907
            V  E  D S K W EKM+TLFI KGSGFSSRSVITGDAY+ +NEIG+P E+A+R+TFE+R
Sbjct: 295  VNKELNDPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEER 354

Query: 2908 VTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINR 3087
            V+  N+  LQELVDK+LCLTY+DG + Y++  GS GHTYLK GQI++R+IMDGDIVFINR
Sbjct: 355  VSVHNIRYLQELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINR 414

Query: 3088 PPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFS 3267
            PP+THKHSLQA  VY+HDDH VKINPL+C PL ADFDGDCIHLFYPQS+AAKAEV+ LFS
Sbjct: 415  PPTTHKHSLQALRVYLHDDHVVKINPLICGPLSADFDGDCIHLFYPQSIAAKAEVLGLFS 474

Query: 3268 VEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRN 3447
            VEKQLLSSH+ NLNLQ  NDSLL+LK+ FR  FL +A AQQL+MF+SS LP PAL   R+
Sbjct: 475  VEKQLLSSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRS 534

Query: 3448 SGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGP 3627
                WT  Q+LQ+VLP   DC G+ +LI+    L+FDF+RDA+               GP
Sbjct: 535  GSLHWTALQILQTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGP 594

Query: 3628 KEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNE 3807
            +E ++FF+ LQPLLME +F +GFSV L D+S+P   ++ L+ ++Q +  +L QLR T+NE
Sbjct: 595  EEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNE 654

Query: 3808 LVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLY 3987
            LV++Q++NHLR++KVP  +FILKLS+LG L D+KSES+I KV            D+G+ Y
Sbjct: 655  LVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFY 714

Query: 3988 SKALVEDIFSHYVTKYSNG-----AEAYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXXX 4152
            SK+L+ED+ S +  +YS+      +  +GLVK  FFHGL+ +EE++H             
Sbjct: 715  SKSLIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSR 774

Query: 4153 GLTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDP----PAGE 4320
            GLTEPGTLFK LMAILRDVVICYDGTVRNVCSNSI+Q EY        +  P    P GE
Sbjct: 775  GLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAG---MMQPYSLFPPGE 831

Query: 4321 PVGVLAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYC 4500
            PVGVLAATA+S PAYKAVLDS+ ++NSSW++MKEILL +V++KN   DRRV+LYLN+C C
Sbjct: 832  PVGVLAATAMSTPAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCAC 891

Query: 4501 GKNFCKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRL 4680
            G+ +C ENAA+ V+++LK++TL++ A+DF IEY +  T    S    GLVGH+HL++M L
Sbjct: 892  GRKYCNENAAYVVKSHLKKVTLKDAAMDFMIEYNRQPT---PSGLGPGLVGHVHLNRMLL 948

Query: 4681 QVLNKSTEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDHHGISS-QLPCVQ 4857
            + LN    E++R+C++ +S + KKK    K+   +  S SE C+    +G  S  +PC+ 
Sbjct: 949  KELNIDMTEVLRRCQETMSSFKKKK---KKIAHALRFSISEHCAFHQWNGEESIDMPCLI 1005

Query: 4858 FTYLNETEDFEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLK 5037
            F +       E+T H +A+++ P+L +T++KGD R+ SA++IW+  DS SW +N      
Sbjct: 1006 FWHQTRDVHLERTAHILADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQD 1065

Query: 5038 GEIALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQ 5217
            GE+AL+V +EK+AV++NGDAW+ + D CLPVLHL+D+RRS+PY I+Q+QELLGISCAFDQ
Sbjct: 1066 GELALDVCLEKSAVKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQ 1125

Query: 5218 SVQRLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATL 5397
             +QRLS S+  V+KGVL +HLIL+ANSMTCTG+++GFN GG+KAL R+L +QVPFTEATL
Sbjct: 1126 MIQRLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATL 1185

Query: 5398 LTPMKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVY 5577
             TP KCFE AAEK H D L SIV+SCSWGKHVAVGTG+ F ILWD +++   +    DVY
Sbjct: 1186 FTPRKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVY 1245

Query: 5578 EFLDMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVER 5757
             FL MVR    E E T AC G +++D+        + LSPE   +  +   F+D+ + E 
Sbjct: 1246 NFLHMVRSGKSE-EPTSACLGEEIEDIMVEDEYGELTLSPEP-FSTSEKPVFEDSAEFEH 1303

Query: 5758 AYADKRSFENWEGTKSRWEGITSSKCDIGSSQGWEKLDKSASPVHKPG-IWSSWDVDKVQ 5934
                    +N+ G +S+WE   S          WE  +   +     G  WS W      
Sbjct: 1304 C------LDNYPG-ESKWEKAPSLGAVSTGGGQWESNENGKATNSSDGNDWSGWGRKAEP 1356

Query: 5935 QQPIESSKLEVERDGFCTWDSVRV--KKADCLSGQSDAWNEFVTDR-------NVDRPEK 6087
               + +++   E      WD+      KA   S  +D W+   T         ++++  K
Sbjct: 1357 DVTVTNAQ---ENTSNSAWDTTSSWGNKATNSSNDND-WSNCSTKEVERDSFTSMEKTPK 1412

Query: 6088 LLVWDAKPT-SSPTKHIS--------DDSSFSKLDAGAHESFNAADSLKSFGDTSKKPEK 6240
               WD+  T  + TK  S          S +S L     E+ +A          S   E 
Sbjct: 1413 SGGWDSASTWGTKTKDDSFKRETAPKKSSQWSGLQKDKAETQDAFHKKAEMASKSGGWED 1472

Query: 6241 GAWA--SIEMQDGWAQRGVKGHERPLNIERWKENRANDPRDQGWRSQGWGSSNSADPASH 6414
             AW+  + + +D W+ + VK       ++          ++   ++ GWGS+      S 
Sbjct: 1473 KAWSRGTSKTEDNWSSQ-VKDKAESFQVQ---------VQEVSSKTNGWGSTGGWTKNSG 1522

Query: 6415 KNHSSRSPVTADDWKGWN 6468
             +H S +        GWN
Sbjct: 1523 GDHQSEA--------GWN 1532



 Score =  169 bits (427), Expect = 2e-38
 Identities = 95/234 (40%), Positives = 132/234 (56%), Gaps = 2/234 (0%)
 Frame = +1

Query: 6253 SIEMQDGWAQRGVKGHERPLNIERWKENRANDPRDQGWRSQGWGSSNSADPASHKNHSSR 6432
            S E+  GW     K      +   W      D ++QG  S+GWG  N+ +  + KN   +
Sbjct: 1731 SPEVSHGWGSH--KESSEQTSSHGW------DKKNQG--SKGWGG-NAGEWKNRKNRPPK 1779

Query: 6433 SPVTADDWKGWNTNKTFNFKGRRSESFTPEEEKILVDVEPIMHSLRKILHDS--SDGSRL 6606
            SP  ++D    N    +   G+R + FT EE+ IL D+EPIM S+RK++H S  +DG  L
Sbjct: 1780 SPGMSND--DANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPL 1837

Query: 6607 SPEDQSFIMENVFKHHPDKQAKVTNRIDYIMVDKHESFKDSRCFYVVSCDGSSADFSYLK 6786
            S EDQSF++++VF  HPDK AK+   ID+ MV +H SF++SRCFYVV+ DG   DFSY K
Sbjct: 1838 SAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRK 1897

Query: 6787 CMENFVKENYPEHAESFNKKYFRRRRAETRSDNRQDQQQ*LRGVARTNNNNRGV 6948
            C++NF+K  YP+ AE F  KYFR+ R     D         R  A   N N+ +
Sbjct: 1898 CLDNFIKGKYPDLAEMFVAKYFRKPRPNRNRD---------RNPASEENENKSI 1942


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score = 1445 bits (3741), Expect = 0.0
 Identities = 766/1550 (49%), Positives = 1029/1550 (66%), Gaps = 26/1550 (1%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            M++N  S  + DG I  I+F LAT +EICT SI+D P+SH SQLTNPFLGLPLE GKCES
Sbjct: 1    MDENSQSS-IFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCES 59

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMK--KLKIGSSQAKET 2187
            CGT+E  KCEGHFG+I LP P+YHP HI+ELK +L+L+CLKC+++K  K++I S+   E 
Sbjct: 60   CGTSEPGKCEGHFGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGVAER 119

Query: 2188 LSYSSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNMCQ 2367
            L     +  ++   I+I+EVK +DGA  LEL + SRS+L DG WNFL+++GF +GD+  +
Sbjct: 120  LLSCCEVSIKECAQISIREVKNTDGACFLELKLPSRSRLRDGCWNFLERYGFRYGDDFTR 179

Query: 2368 SLLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXX 2547
             LLP E ++IL++IP ET+K+L+GKGYFPQDG+ILQ +PVPPNCL VP            
Sbjct: 180  PLLPCEVMQILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGITVMSSD 239

Query: 2548 XXXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPH-ASRKF 2724
                +LK+VL   E I+ SRSGAPNF +H+ E+  LQ+ + +Y+++RGTTK       ++
Sbjct: 240  LSISMLKKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVDTRY 299

Query: 2725 IVGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFED 2904
             V  E+++ + K W EKM+TLFI KGSGFSSRSVITGDAY  +N++GIP EIA+R+TFE+
Sbjct: 300  GVKKESSESTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQRITFEE 359

Query: 2905 RVTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFIN 3084
            RV+  NM  LQELVD +LCLTYKDG + Y++  GSKGHT+L+ GQ+++R+IMDGDIVFIN
Sbjct: 360  RVSVHNMRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFIN 419

Query: 3085 RPPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELF 3264
            RPP+THKHSLQA SVYVHDDH VKINPL+C PL ADFDGDC+HLFYPQSLAAKAEV+ELF
Sbjct: 420  RPPTTHKHSLQALSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELF 479

Query: 3265 SVEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSR 3444
            SVEKQLLSSH+ NLNLQ   DSLL+LK+ F+  FL ++ AQQL+MF+S  LPQPAL K  
Sbjct: 480  SVEKQLLSSHSGNLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVN 539

Query: 3445 NSGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNG 3624
               P WT  Q+LQ  LP   +C GE+ LI     L+ DFNRD +               G
Sbjct: 540  CFFPHWTAHQILQMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMFFEKG 599

Query: 3625 PKEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYN 3804
                ++FFN LQP+LME LF +GFSV+L DFS+ + V + +  S + I  +L  LR T+N
Sbjct: 600  SGAVLKFFNSLQPMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFN 659

Query: 3805 ELVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKL 3984
            ELV++QV+NH+R +K P+  FIL  SALG LID+KS++++TKV            DRGKL
Sbjct: 660  ELVELQVENHIRDVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKL 719

Query: 3985 YSKALVEDIFSHYVTKYSNG-----AEAYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXX 4149
            YSK LVED+ SH+++KY        +  YGL+++SFFHGL+ +EE+ H            
Sbjct: 720  YSKTLVEDLASHFLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSS 779

Query: 4150 XGLTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPVG 4329
             GL+EPGTLFK LMAILRDVVICYDGTVRNV SNSI+QFEY            PAGEPVG
Sbjct: 780  RGLSEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVG 839

Query: 4330 VLAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKN 4509
            VLAATA+SNPAYKAVLDS+ ++N SW++MKEILL +V +KN  +DRRV+LYLNDC CG+N
Sbjct: 840  VLAATAMSNPAYKAVLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRN 899

Query: 4510 FCKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVL 4689
            +C+E AA+ V+N+L++++L++ A  F IEY K     E   + +GLVGH+HLDK +LQ L
Sbjct: 900  YCQERAAYLVKNHLEKVSLKDIAKCFMIEY-KSQQIPESFGSDAGLVGHVHLDKRKLQDL 958

Query: 4690 NKSTEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDHHGISSQLPCVQFTYL 4869
            N + + I+ KC++ ++ + KKK  +  + ++  L  SE CS +       + PC+ F + 
Sbjct: 959  NITAQVILEKCQETVNTFRKKK-KVGNLFKKTILLVSESCSFQQ---CIDESPCLMFFWQ 1014

Query: 4870 NETE-DFEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGEI 5046
               +   E+T + +A++ICP+LL+T++KGDHR+  ANIIW   ++N+W+RN   T KGE+
Sbjct: 1015 GADDVHLERTSNILADMICPVLLETIIKGDHRISCANIIWATPETNTWIRNPSRTQKGEL 1074

Query: 5047 ALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSVQ 5226
            AL++V+EK+ V+K+GDAW+ + D+CLPVLHL+++ RSIPY I+Q+QELLG+SCAFD +VQ
Sbjct: 1075 ALDIVLEKSVVKKSGDAWRIVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQ 1134

Query: 5227 RLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLTP 5406
            RLS S+  VAKGVLKEHLIL+ NSMTC GSL+GF  GG+K L RSL +QVPFTEATL TP
Sbjct: 1135 RLSKSVTMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTP 1194

Query: 5407 MKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEFL 5586
             KCFE AAEK H+D L SIV+SC+WGKHV VGTG++F +LWD ++   N     DVY FL
Sbjct: 1195 RKCFEKAAEKCHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSFL 1254

Query: 5587 DMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVERAYA 5766
            +MVR T+G  E   AC G +VDDL          LSPE N +  D  TF+D+       A
Sbjct: 1255 NMVRSTAGGEESVTACLGAEVDDLMLEDEDWN--LSPEHNSS-SDKPTFEDS-------A 1304

Query: 5767 DKRSFENWEGTKSRWEGITSSKCDIGSSQGWEKLDKSASPVHKPGIWSSWDVDKVQQQPI 5946
            + + F   +  +S WE I+S K    SS  W+ +DK+   V K   W S  ++  +   +
Sbjct: 1305 EFQDFLGNQPAESNWEKISSLKDRSRSSGNWD-VDKNDGAV-KEKPW-SLGMNTAEANDV 1361

Query: 5947 ESSKLEVERDGFCTWDSVRVKKADCLSGQSDAWNEFVTDRNVDRPEKLLVWDAKP----T 6114
             SS           WD+   +        +++WN   ++ NV +      W  K      
Sbjct: 1362 ASS----------GWDTAAARTT------NNSWN---SENNVAQSNSFSGWATKKPEPHN 1402

Query: 6115 SSPTKHISDDSSFSKLDAGAHESFNAADSLKSFGDTSKKPEKGAWASIEMQDGWAQRGVK 6294
               TK   + ++ +  DAGA  ++   D    F +T+    K  W  +   D   Q   K
Sbjct: 1403 GFATKVQEEPTTSNDWDAGA--AWGRKDRDNKFAETN--ASKSWWGKVTDGDESGQNKSK 1458

Query: 6295 G---HERPLNIERWKENRANDPRDQGWRSQ----------GWGSSNSADP 6405
                 ++ +    W +  + D    GW S+          GW S  +++P
Sbjct: 1459 NKRPEDQDVGTHGWDDKMSQDQSISGWASKTTQEATTESLGWDSKGNSNP 1508



 Score =  156 bits (395), Expect = 1e-34
 Identities = 85/239 (35%), Positives = 129/239 (53%), Gaps = 6/239 (2%)
 Frame = +1

Query: 6181 SFNAADSLKSFGDTSKKPEKGAWAS----IEMQDGWAQRGVKGHERPLNIERWKENRAND 6348
            S N   +   +G          W S    ++   GW      G       ++W +     
Sbjct: 1676 SSNQEGTASGWGKPKSPALSEGWGSPREPVKAVHGWGVPNSGGGNGSGRDQQWGQQSREF 1735

Query: 6349 PRDQGWRSQGWGSSNSADPASHKNHSSRSPVTADDWKGWNTNKTFNFKGRRSESFTPEEE 6528
             +D+   S+GWGS+N       KN  +R     +D    N +  F    +R + FT +E+
Sbjct: 1736 KKDRFEGSRGWGSNNG----DWKNKRNRPSKPHEDL---NASGIFTTTRQRLDVFTSQEQ 1788

Query: 6529 KILVDVEPIMHSLRKILHDS--SDGSRLSPEDQSFIMENVFKHHPDKQAKVTNRIDYIMV 6702
             IL D+EP+M S+R+I+H +  +DG  LS +DQS++++NVF +HPDK  K+   ID++ V
Sbjct: 1789 DILSDIEPLMLSIRRIMHQTGYNDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTV 1848

Query: 6703 DKHESFKDSRCFYVVSCDGSSADFSYLKCMENFVKENYPEHAESFNKKYFRRRRAETRS 6879
             +H +F++SRCFY+VS DG   DFSY KC+ENF+K  YP+ A+ F  KYF RR    R+
Sbjct: 1849 SRHSNFQESRCFYIVSTDGCKQDFSYRKCLENFIKGKYPDLADEFIAKYFARRGNRQRT 1907


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score = 1445 bits (3740), Expect = 0.0
 Identities = 763/1573 (48%), Positives = 1052/1573 (66%), Gaps = 42/1573 (2%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            MEDN P+  VLD  +  I+FS+AT  EI T SI+DS +SH SQL NPFLGLPLE G+CES
Sbjct: 1    MEDN-PTSSVLDAKVIGIRFSMATRHEISTASISDSTISHASQLANPFLGLPLEFGRCES 59

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKIGSSQAKETLS 2193
            CGT+E  KCEGHFGYI+LP P+YHP H+ ELK IL+LVCL C+++KK K  SS +    S
Sbjct: 60   CGTSEAGKCEGHFGYIELPVPIYHPSHVTELKKILSLVCLNCLKLKKTKFPSSSSGLAQS 119

Query: 2194 Y-SSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNMCQS 2370
              S C    +   ++I+EVKT+DGA  L L VS +SK++DGFW FL+K+G+ +G +  ++
Sbjct: 120  LLSPCCEDVNAAQVSIREVKTADGACYLALKVS-KSKMHDGFWGFLEKYGYRYGGDHTRA 178

Query: 2371 LLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXXX 2550
            LLP E ++I+++ P+ET ++LA KGYFPQDG++L+Y+PVPPNCL VP             
Sbjct: 179  LLPCEVMEIIKRFPQETNRKLAIKGYFPQDGYVLKYLPVPPNCLSVPVVSDGVSVMSSDP 238

Query: 2551 XXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPH-ASRKFI 2727
               +L+++L  +E I+ SRSG PNF SH+VE+  LQ+ + +Y+++RGT+K       ++ 
Sbjct: 239  AMTILRKLLRKVEIIRSSRSGEPNFESHQVEANDLQSVVDQYLQVRGTSKATRDIETRYG 298

Query: 2728 VGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDR 2907
            V  E  D S K W EKM+TLFI KGSGFSSR+VITGD Y+ INE+GIP E+A+R+TFE+R
Sbjct: 299  VNKELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEER 358

Query: 2908 VTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINR 3087
            V+  N+  LQ+LVD+ +CLTYK+G++ Y++  GSKGHTYLK GQI++R+IMDGD+VFINR
Sbjct: 359  VSIHNIRYLQKLVDENMCLTYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDVVFINR 418

Query: 3088 PPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFS 3267
            PP+THKHSLQA  VY+HDDHTVKINPL+C PLGADFDGDC+HLFYPQSLAAKAEV+ELFS
Sbjct: 419  PPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFS 478

Query: 3268 VEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRN 3447
            VEKQLLSSH+ NLNLQ   DSLL+LK+  ++ FL+RA A Q++MFLS  LP PALFK+ +
Sbjct: 479  VEKQLLSSHSGNLNLQLSTDSLLSLKMLVKSCFLDRAAANQMAMFLSLPLPMPALFKAGS 538

Query: 3448 SGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGP 3627
               +WT  Q+LQ  LP   DC G ++LIR+ EIL FDF RD L               GP
Sbjct: 539  GDSYWTSVQMLQCALPSSFDCTGGRYLIRQREILEFDFTRDLLPSIINEVAASIFFSQGP 598

Query: 3628 KEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNE 3807
            KEA+ FF++LQP LME +F  G+SV L+DFS+ + V   +  S+ +I  +L+QLR+ Y E
Sbjct: 599  KEALNFFDVLQPFLMENIFAHGYSVGLQDFSISRAVKRVINRSIGKISPLLHQLRVVYKE 658

Query: 3808 LVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLY 3987
            LV  Q++ H++ I++P+++F LK + LGDLID+KS+S++ KV            +RGK Y
Sbjct: 659  LVAQQLEKHMQDIELPVINFALKSTKLGDLIDSKSKSALDKVVQQIGFLGQQLFERGKFY 718

Query: 3988 SKALVEDIFSHYVTKYSNGAEAY-----GLVKSSFFHGLNVFEELIHXXXXXXXXXXXXX 4152
            SK LVED+ SH+  K     + Y     GL+K  FFHGL+ +EEL+H             
Sbjct: 719  SKGLVEDVGSHFHVKCFYDGDGYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIVRSSR 778

Query: 4153 GLTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPVGV 4332
            GL+EPGTLFK LMAILRDVVICYDGTVRNVCSNSI+QFEY            PAGEPVGV
Sbjct: 779  GLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDKSQPLFPAGEPVGV 838

Query: 4333 LAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKNF 4512
            LAAT++SNPAYKAVLD+S ++NSSWE MKEILL +VN++N  +DRRV+LYLNDC CG+++
Sbjct: 839  LAATSMSNPAYKAVLDASPSSNSSWEFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRSY 898

Query: 4513 CKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVLN 4692
            C+ENAA+ V+N L++++L++ A+DF++EYQ+    ++GSE A GLVGHIHL++  L+ L 
Sbjct: 899  CRENAAYLVKNQLRKVSLKDAALDFTVEYQQQRRRNDGSEDA-GLVGHIHLNEAMLEKLK 957

Query: 4693 KSTEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDHHGISSQLPCVQFTYLN 4872
             +  E+ +KC++ ++ + +KK  +     +  L  SE CSS     ++S  PCV   +  
Sbjct: 958  INMSEVYQKCQERLNSFSRKK-KVFHFFRKTELFFSESCSS-----LNSSAPCVTILW-P 1010

Query: 4873 ETEDFEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGEIAL 5052
            + +D ++T   +A++ICP+LLDT+++GD R+ SANIIWV   +N+WVRN   +  GE+AL
Sbjct: 1011 DGDDLDQTTKVLADMICPVLLDTIIQGDPRISSANIIWVNPGTNTWVRNPSKSSNGELAL 1070

Query: 5053 EVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSVQRL 5232
            +V++EK AV+++GDAW+ I D+CLPVLHL+D+RRS PY I+QIQELLGISC FDQ++QRL
Sbjct: 1071 DVILEKEAVKQSGDAWRIILDSCLPVLHLIDTRRSTPYAIKQIQELLGISCTFDQAIQRL 1130

Query: 5233 STSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLTPMK 5412
            + S+R VAKGVL+EHLIL+A+SMTC G+L+GFN GG+K L R L +QVPFT+ATL TP K
Sbjct: 1131 AASVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLNIQVPFTDATLFTPRK 1190

Query: 5413 CFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEFLDM 5592
            CFE AAEK H+D L SIV+SCSWGKHVAVGTG+ F I+WD +++ +NE+ G DVY FL+M
Sbjct: 1191 CFERAAEKRHADSLSSIVASCSWGKHVAVGTGSRFDIVWDPKEVKSNEIEGMDVYNFLNM 1250

Query: 5593 VRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVERAYADK 5772
            V+  +   E  +AC G D+DDL          +SPE    F  D  FD++ ++     + 
Sbjct: 1251 VKGLANGDEENNACLGEDIDDLLDDDNMDW-GMSPEHTSGF--DAVFDESFEL----LNG 1303

Query: 5773 RSFENWEGTKSR-------WEGITSSKCDI------------GSSQGWEKLDKSASPVHK 5895
             +   W+  K +       W G   +K +I            GS+Q W K D +     K
Sbjct: 1304 STSNGWDSNKDQNKTTTNDWSGWGQNKSEIQVDVAETDQWGSGSTQKW-KADITKEDSSK 1362

Query: 5896 PGIWSSWDVDKVQQQPIESSKLEVERDGF--CTWDSVRVKK----ADCLSGQSDAWNEFV 6057
             G W +       Q     +K  V+ DG     W+S   +K     +  S +S AW E  
Sbjct: 1363 SGAWETGTNQNSDQPSWGGNKTGVQDDGVVKTQWESGSSQKLKSDINKDSSKSGAW-EAS 1421

Query: 6058 TDRNVDRPEKLLVWDAKPTSSPTKHISDDSSF-SKLDAGAHESF-------NAADSLKSF 6213
            T++N D+P     W    +      + DD +  ++ ++G+ + +       N++ S    
Sbjct: 1422 TNQNNDQPS----WGRNKSG-----VQDDGAVKTQWESGSSQKWKTDVIQENSSKSGAWE 1472

Query: 6214 GDTSKKPEKGAWASIE--MQDGWAQRGVKGHERPLNIERWKENRANDPRDQGWRSQGWGS 6387
             +T+K  ++ +W   +  +QD  A   VK      + ++WK +   +   +    +   +
Sbjct: 1473 ANTNKNSDQPSWGKNKSGIQDDGA---VKTQWESGSSQKWKTDVIQEDSSKSGAWEANTN 1529

Query: 6388 SNSADPASHKNHS 6426
             NS  P+  KN S
Sbjct: 1530 KNSDPPSWGKNKS 1542



 Score =  164 bits (414), Expect = 7e-37
 Identities = 126/396 (31%), Positives = 191/396 (48%), Gaps = 55/396 (13%)
 Frame = +1

Query: 5842 GSSQGWEKLDKSASPVHKPGIWSS-----WDVDKVQQQPIESSKLEVERD--GFCTWDSV 6000
            G   G E+   ++    K G W +     W+ D VQ+    S+  E + +  G+  W S 
Sbjct: 1804 GEQDGAERSQWASGSSQKSGAWEANPSQKWNADLVQEDSSRSNNDESKTNSGGWKAWGSS 1863

Query: 6001 R--VKKADCLSGQSDAWN----EFVTDRNVDRPEKLLVWDAKPTSSPTKHISDD-SSFSK 6159
            +  V + +    Q D+W     +   D   D P K+  W A  T   TK  S+D SS+ K
Sbjct: 1864 KTEVHEGESKKVQEDSWKSQKWKAGADVTQDSP-KMGSWGA--TKDATKPKSNDWSSWGK 1920

Query: 6160 LDAGAHESFNAADSLKSFGDTSKKPEKGAWASIEMQDG-----WAQRG--VKGH---ERP 6309
                 H+  +      S+    +K E  + A +  +D      W  +   VK     + P
Sbjct: 1921 KKDEIHDGGSEKIQEDSWSSGKRKAESKSVADVMQEDSSKSNTWEHKSDDVKDSWDAKVP 1980

Query: 6310 LNIERW-----KENRANDPRDQG---WRSQGWGSS-NSADPASHKNHSSRSP-------- 6438
            +    W     +EN+  D +++      S+GW S   SA+  S KN     P        
Sbjct: 1981 VANSSWGKPKSQENQPWDSKNESNPTASSRGWDSQVASANSDSDKNFQWGKPGRESFKKN 2040

Query: 6439 ------------VTADDWKGWNTNKTFNFKGRRSESFTPEEEKILVDVEPIMHSLRKILH 6582
                          A DWK  N N+     G R + ++ EE+ IL D+EPI+ S+R+I+ 
Sbjct: 2041 RFEGSQGSQGWGSNAGDWK--NKNRPARPPGPRLDLYSSEEQDILKDIEPIVQSIRRIMQ 2098

Query: 6583 DS--SDGSRLSPEDQSFIMENVFKHHPDKQAKVTNRIDYIMVDKHESFKDSRCFYVVSCD 6756
                +DG  L+ EDQ +++ENVF+HHPDK+ K+   ID++MV +H +F++SRCFYVV  D
Sbjct: 2099 QQGYNDGDPLAAEDQQYVLENVFEHHPDKETKMGVGIDHVMVSRHSNFQESRCFYVVLKD 2158

Query: 6757 GSSADFSYLKCMENFVKENYPEHAESFNKKYFRRRR 6864
            G   DFSY KC+E+FV++ Y + AESF  KYFR+ R
Sbjct: 2159 GKKEDFSYRKCLESFVRKKYADTAESFCGKYFRKPR 2194


>gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao]
          Length = 1675

 Score = 1438 bits (3722), Expect = 0.0
 Identities = 795/1692 (46%), Positives = 1070/1692 (63%), Gaps = 107/1692 (6%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            ME+N  +  V DG I  I F LAT  EI T SI+  P++H SQL+N +LGLPLE GKC +
Sbjct: 1    MEENSSASTV-DGEIVGIGFCLATPREIFTASISGFPINHVSQLSNSYLGLPLEFGKCNA 59

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMK-KLKIGSSQAKETL 2190
            CGT+E  KCEGHFGYI+LP P+YHP HI+ELK +L+L+CLKC+RMK K +I S    + L
Sbjct: 60   CGTSEPGKCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLRMKNKFQIKSGSISDRL 119

Query: 2191 SYSSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNM-CQ 2367
              +SC  C +   ++IKEVKT+DGA  LEL   SR       W FL+K+GF +GD+   +
Sbjct: 120  -LASC--CENAPQVSIKEVKTTDGACSLELKQPSRQARTS--WEFLEKYGFRYGDHHNTR 174

Query: 2368 SLLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXX 2547
            +LLP E ++IL++IP ET+++L+GKG+FPQ+G+IL+Y+PVPPNCL VP+           
Sbjct: 175  TLLPCEVMEILKRIPAETRRKLSGKGFFPQEGYILRYLPVPPNCLSVPDISDGVSIMSSD 234

Query: 2548 XXXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVP-HASRKF 2724
                +LK+VL  +E IK SRSG PNF SHEVE+  LQ+++ +Y+++RGT K   +   ++
Sbjct: 235  LSTAMLKKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRNIDARY 294

Query: 2725 IVGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFED 2904
             +  +A+D S K W EKM+TLFI KGSGFSSR VITGD Y+ +NEIGIP EIA+R+TFE+
Sbjct: 295  GISKDASDSSTKAWLEKMRTLFIRKGSGFSSRGVITGDPYKKVNEIGIPSEIAQRITFEE 354

Query: 2905 RVTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFIN 3084
            RV   NM  LQ LVD +LCLTY+DG + Y++  GSKGHT+L+ GQ+++R+IMDGDIVFIN
Sbjct: 355  RVNMHNMRYLQNLVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFIN 414

Query: 3085 RPPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELF 3264
            RPP+THKHSLQA SVYVHDDHTVKINPL+C PL ADFDGDCIHLFYPQSLAAKAEV ELF
Sbjct: 415  RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELF 474

Query: 3265 SVEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSR 3444
            SVEKQLLSSHN NLNLQ   DSLL+L+V  +T    +A AQQLSMFLSS LPQPA  K  
Sbjct: 475  SVEKQLLSSHNGNLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGN 534

Query: 3445 NSGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNG 3624
            + GP WT  Q+LQ+  P  +DC G+++LI + +IL  DF+RD +               G
Sbjct: 535  SFGPCWTALQILQTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKG 594

Query: 3625 PKEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYN 3804
            PKE + FF+ LQPLLME +F +GFSV+L DFSV ++V+++++  +Q+I  +L QLR TYN
Sbjct: 595  PKEVLNFFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYN 654

Query: 3805 ELVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKL 3984
            ELV +Q++NH+R  K P+ +FIL  SALGDLID+KS+S++ KV            ++GK 
Sbjct: 655  ELVGLQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKF 714

Query: 3985 YSKALVEDIFSHYVTKY-SNGAE----AYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXX 4149
            YSK LVED+   + + Y S+G +     +GL+KS FFHGL+ +E ++H            
Sbjct: 715  YSKTLVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSS 774

Query: 4150 XGLTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPVG 4329
             GL+EPGTLFK LMAILRDVVICYDGTVRN+ SNSI+QF+Y  N         PAGEPVG
Sbjct: 775  RGLSEPGTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYGLN--ARTKPQFPAGEPVG 832

Query: 4330 VLAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKN 4509
            VLAATA+SNPAYKAVLDS+ ++NSSWELMKEILL +V+ KN   DRRV+LYL DC CG+ 
Sbjct: 833  VLAATAMSNPAYKAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRK 892

Query: 4510 FCKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVL 4689
            +C+ENAA+ V+N+L+++ L++ AV+   EY++  T    SE+ +GLVGHI L+K  L+ L
Sbjct: 893  YCQENAAYLVKNHLRKVKLKDTAVELIFEYKQQQTV---SESEAGLVGHILLNKAVLKEL 949

Query: 4690 NKSTEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDHHGIS-SQLPCVQFTY 4866
            N S +E+  KC++ I  + KKK   +   +R  L  SECCS +   G     + C+ F  
Sbjct: 950  NISMQEVHMKCQETIISFRKKK-KTADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFC 1008

Query: 4867 LNETED-FEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGE 5043
             N  +D  + T+  + ++I P+LL+TV+KGD R+ SANIIWV  D+ +W+R+   T KGE
Sbjct: 1009 RNTKDDHLDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGE 1068

Query: 5044 IALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSV 5223
            +AL+VV+EK+AV++NGDAW+T+ D CLPV++L+D++RSIPY I+Q+QELLGISCAF+Q+V
Sbjct: 1069 LALDVVLEKSAVKQNGDAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAV 1128

Query: 5224 QRLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLT 5403
            QRLSTS+  VA+GVLKEHLIL+ANSMTC G+L+GFN GG+KAL RSL +QVPF+EATL T
Sbjct: 1129 QRLSTSVSMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFT 1188

Query: 5404 PMKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEF 5583
            P KCFE AAEK H D L SIV+SCSWGKHVAVGTG+ F +LWD +++  ++  G DVY F
Sbjct: 1189 PRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNF 1248

Query: 5584 LDMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVERAY 5763
            L M+   SG    T  C G +VDDL          LSPE +    D   F+D    E   
Sbjct: 1249 LHMLSSASGPSSTT-TCLGEEVDDLMDVDNMAEWSLSPEHSNGL-DKPVFEDAADFENDL 1306

Query: 5764 ADKRSFENWE-----------GTKSRWE-----------GITSSK-----CDIGSSQG-W 5859
              + +  +WE              S W             +TS+      CD G+S+   
Sbjct: 1307 DFQPAESSWEKGVSLDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQSDWCDWGTSKSKT 1366

Query: 5860 EKLDKSASPVHKPGIWSSWDVDKVQQQPIESSKL-EVERDGFCTWDSVR-----VKKADC 6021
            +    +A+   K   W  W   K + Q + ++     E++ +C W + +     V  A  
Sbjct: 1367 QDAAAAATSTTKKTEWCDWGTSKSKTQEVAATVTGTAEQNEWCDWRTSKSKIQVVAAAVT 1426

Query: 6022 LSGQSDAWNEFVTDRNVDRPEKLLVWDAKPT--------SSPTKHIS------------- 6138
             + +   W ++ T ++  +     V     T         S T+ +S             
Sbjct: 1427 STTKQSEWGDWGTSKSKTQDVAAAVTGTMETEWGDWGKGKSKTQDVSPKVDGTCVNEQTK 1486

Query: 6139 --------DDSSFSKLDAGAHESFNAADSLKSFGDTSKKPEKGAWASIEMQDGWAQRGV- 6291
                    +D+    ++    +S N AD+  S+G   K+ EK          GW  + V 
Sbjct: 1487 LSDWGLKKNDTQDVSMEEKTFKS-NGADTGTSWGTMGKESEKPDANDALPWSGWGTQDVI 1545

Query: 6292 --KGHERPLNIERWKENRANDPRDQGW----------RSQGW------------------ 6381
              K  +       W++ ++ +   QGW           S GW                  
Sbjct: 1546 PTKTLDDSSKSSGWEQQKSPE-CSQGWGSLDESNQPASSNGWDTPNGLGSTQSEKQHQWG 1604

Query: 6382 ---GSSNSADPASHKNHSSRSPVTADDWKGWNTNKTFNFKGRRSESFTPEEEKILVDVEP 6552
               GS   A  AS KNH  +S    +D    +    +    +R + FT EE+ IL DVEP
Sbjct: 1605 QSRGSRRWASDASKKNHPVKSARVMND--DSSMAAMYTATRQRLDMFTSEEQDILSDVEP 1662

Query: 6553 IMHSLRKILHDS 6588
            +M S+RKI+H S
Sbjct: 1663 LMQSIRKIMHQS 1674


>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
          Length = 2052

 Score = 1431 bits (3704), Expect = 0.0
 Identities = 764/1587 (48%), Positives = 1039/1587 (65%), Gaps = 29/1587 (1%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            ME+N PS  VLDG +  +KF +AT +EICT SI+DS +SH SQL+NPFLGLPLE G+CES
Sbjct: 1    MEENPPSS-VLDGMVVGVKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCES 59

Query: 2014 CGTAEQEKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKI---GSSQAKE 2184
            CGT+E  KCEGHFGYI+LP P+YHP HI+ELK +L+LVCL C++M+K K+   GS  A+ 
Sbjct: 60   CGTSEAGKCEGHFGYIELPVPIYHPSHISELKRLLSLVCLNCLKMRKTKLSASGSGLAQR 119

Query: 2185 TLSYSSCLYCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNMC 2364
             +S   C    +   I+I+EVKTSDGA  L L VS +SK++  FW FL+K+G+ +  +  
Sbjct: 120  LVS--PCCEEINAAQISIREVKTSDGACYLALKVS-KSKMHPDFWGFLEKYGYRYEGDHT 176

Query: 2365 QSLLPSESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXX 2544
            ++LLP E+++I+++IP ETKK+LAGKGYFPQDG++ +++PVPPNCL VPE          
Sbjct: 177  RALLPCEAMEIIKRIPIETKKKLAGKGYFPQDGYVFKHLPVPPNCLSVPEVSDGISVMSS 236

Query: 2545 XXXXXLLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPHASR-K 2721
                 +L+++L  +E IK SRSG PNF SH VE+  LQ+ + +Y ++RGT+K    +  +
Sbjct: 237  DPSMTILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVEQYFQIRGTSKAARDTETR 296

Query: 2722 FIVGTEATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFE 2901
            F V  E    S K W EKM+TLFI KGSGFSSR+VITGD Y+ INE+GIP E+A+R+TFE
Sbjct: 297  FGVNKELNASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFE 356

Query: 2902 DRVTEFNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFI 3081
            +RV   N+  LQ+LVD+ LCLTYK+G++ +++  GSKGH YLK GQI++R+IMDGDIVFI
Sbjct: 357  ERVNIHNISYLQKLVDENLCLTYKEGVSTFSLREGSKGHIYLKPGQIVHRRIMDGDIVFI 416

Query: 3082 NRPPSTHKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVEL 3261
            NRPP+THKHSLQA  VY+HDDHTVKINPL+C PLGADFDGDC+HLFYPQSLAAKAEVVEL
Sbjct: 417  NRPPTTHKHSLQALFVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVEL 476

Query: 3262 FSVEKQLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKS 3441
            FSVE QLLSSH+ NLNLQ   DSLL+LK+  +  F +RA A QL+MFL   L +P L K+
Sbjct: 477  FSVENQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFLLP-LGRPGLIKA 535

Query: 3442 RNSGPFWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXN 3621
             +   +WT  Q+LQ  LP   DC G ++LIR+ EIL FDFNRD L               
Sbjct: 536  SSGDSYWTSIQMLQCALPLCFDCSGGRYLIRQSEILEFDFNRDVLPATINEIAASIFFSK 595

Query: 3622 GPKEAIQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTY 3801
            GPKEA++FF++LQP L E +F DGFSV+L+DFS+ +     +  S+ ++  +L+QLR  Y
Sbjct: 596  GPKEALKFFDVLQPFLTESIFADGFSVSLQDFSISRATKRIISRSIGKVSSLLHQLRSIY 655

Query: 3802 NELVDVQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGK 3981
            NELV  Q++  +R I+ P+++F LK + LGDLID+KS+S+I KV            DRG+
Sbjct: 656  NELVAQQLEKLIRDIEHPVINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGR 715

Query: 3982 LYSKALVEDIFSHYVTKYSNGAEAY-----GLVKSSFFHGLNVFEELIHXXXXXXXXXXX 4146
             YSK LVED+ SH+  K     + Y     GL+K SFF+GL+ +EE++H           
Sbjct: 716  FYSKGLVEDVASHFHVKCCYDGDGYPSAEYGLLKGSFFNGLDPYEEMVHSISTREVMVRS 775

Query: 4147 XXGLTEPGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPV 4326
              GL+EPGTLFK LMAILRDVVICYDGTVRN+CSNSI+QFEY   +  ++    PAGEPV
Sbjct: 776  SRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGLEKTEHLF---PAGEPV 832

Query: 4327 GVLAATAISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGK 4506
            GVLAATA+SNPAYKAVLD+S  +NSSWELMKEILL +VN++N   DRRV+LYLNDC CG 
Sbjct: 833  GVLAATAMSNPAYKAVLDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGG 892

Query: 4507 NFCKENAAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQV 4686
            N+C+ENAA+ V++ L+++ L++ AV+F IEYQ+       SET +GLVGHI+LD+M L+ 
Sbjct: 893  NYCRENAAYKVKDQLRKVNLKDAAVEFVIEYQEQRIQKGNSETDAGLVGHIYLDEMMLEE 952

Query: 4687 LNKSTEEIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDHHGISSQLPCVQFTY 4866
            L  S   + +KC + +  +  +K   ++ ++R  LS SE CSS          PC+ F +
Sbjct: 953  LKISMAHVFQKCLERLKSFSPRK-KANQFLKRTELSYSESCSSSH-----PAAPCLTFVW 1006

Query: 4867 LNE-TEDFEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGE 5043
            + +   +F+ T+  ++  ICP+LL+T+++GD R+ SA+IIWV  D+N+WVRN   +  GE
Sbjct: 1007 VEDRNNEFDYTVKILSEKICPVLLETIIQGDPRISSASIIWVTPDTNTWVRNPYKSSTGE 1066

Query: 5044 IALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSV 5223
            +AL++++EK  V+++GDAW+ + D+CLPVLHL+D+RRSIPY I+Q QELLGISC FDQ++
Sbjct: 1067 LALDIILEKEVVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQTQELLGISCTFDQAI 1126

Query: 5224 QRLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLT 5403
            QR++ S++ VAKGVL+EHLIL+A+SMTC G+++GFN GG+KAL R L +QVPFT+ATL T
Sbjct: 1127 QRVAASVKMVAKGVLREHLILLASSMTCGGNMVGFNTGGYKALSRQLNIQVPFTDATLFT 1186

Query: 5404 PMKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEF 5583
            P KCFE AAEK H+D L SIV+SCSWGK VAVGTG+ F I+WD  +I ++E+ G DVY F
Sbjct: 1187 PKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDIVWDANKIRSSEIEGMDVYSF 1246

Query: 5584 LDMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVERAY 5763
            L MV+  +   E TDAC G D+DDL        + +SP  N  FE    F++N +V    
Sbjct: 1247 LHMVKGRTDREEETDACLGEDIDDL-LEEENLDLEMSPPRNSGFE--AVFEENPEVLNNS 1303

Query: 5764 ADKRSFENWEGTKSR---WEGITSSKCDIGSSQGWEKLDKSASPVHKPGIWSSWDVDKVQ 5934
                   N   T+S+   W G  S+K +    +     D++          SSW     Q
Sbjct: 1304 TSNGWDVNSSQTESKTNGWSGWVSNKAETNEGRS----DRAQE--------SSWGKTVTQ 1351

Query: 5935 QQPIESSKLEVERDGFCTWDSVRVKKADCLSGQSDAWNEFVTDRNVDRPEKLLVWDAKPT 6114
            +   +SS           W++      +  S +  AW    ++      EK+   +    
Sbjct: 1352 EDSSKSS----------AWNTNTTGHTNTKSNEWSAWGSKKSEIQAGGSEKV---EGSWG 1398

Query: 6115 SSPTKHISDDSSFSKLDAGAHESFNA---ADSLKSFGDTSKKPEKGAWASIEMQDGWAQR 6285
            S  TK ++   +F     GA+++  A   ++   S+G+ +   E  A  S  MQD W   
Sbjct: 1399 SGKTKDVTQKDNFGSGAWGANKTDQAKTKSNEWSSWGNNNS--EILAGGSENMQDSWGSG 1456

Query: 6286 GVKGHERPLNIE--RWKENRANDPRDQGWRSQGWGSSNSADPASHKNHSSRSPVTADDWK 6459
            G K   +  N+    W  N  +  + Q     GWG + S  PA    +   S   +D WK
Sbjct: 1457 GRKDVTQEGNVTSGAWGAN-VDQTKTQSNEWSGWGKNKSEIPAGGSENVQGS-WGSDKWK 1514

Query: 6460 -----------GWNTNKTFNFKGRRSE 6507
                       GW  N+    K + +E
Sbjct: 1515 DGVTQVDNSASGWGGNRRDQTKAKSNE 1541



 Score =  162 bits (409), Expect = 3e-36
 Identities = 126/427 (29%), Positives = 194/427 (45%), Gaps = 33/427 (7%)
 Frame = +1

Query: 5716 EDDTTFDDNTKVERAYADKRSFENWEGTKSRWEGITSSKCDIGSSQGWEKLDKSASPVHK 5895
            +DD T +DN+  +   A+  S    +   + W G   +K +I +       D   S   K
Sbjct: 1629 KDDVTQNDNSGSDAWGAN--STGQTKSKSNEWSGRGKNKSEIPAGGSENVQDSWGSGTRK 1686

Query: 5896 P------GIWSSWDVDKVQQQPIESSKLEVERDGFCTW--DSVRVKKADCLSGQSDAWNE 6051
                    +  SW   +  Q    S++       +  W  +   +    C + Q D+W  
Sbjct: 1687 DVTQVDTSVSGSWGGSRKDQTNTTSNE-------WAGWGRNKSEIPAGGCETVQEDSWGS 1739

Query: 6052 FVTDRNVDRPEKLL--VWDAKPTSSPTKHISD---------DSSFSKLDAGAHESFNAAD 6198
                 +V + +      W A  T      + +         D    KL   +  S N   
Sbjct: 1740 GKLKDDVTQKDNSGSGAWGANKTGLTKTEVDEWARNKVETADGGSEKLQEDSWNSGNLKS 1799

Query: 6199 SLKSFGDTSKKPEKG---AWASIEMQD-GWAQRGVKGHERPLNIE-----RW-KENRAND 6348
              K    +  KP      +W S    +   + RG + H    N +     +W K+ R + 
Sbjct: 1800 ESKVGNASWGKPNSSGSQSWDSHNQSNQNSSSRGWESHIASANSDSEKGFQWGKQGRESF 1859

Query: 6349 PRDQGWRSQGWGSSNSADPASHKNHSSRSPVTADDWKGWNTNKTFNFKGRRSESFTPEEE 6528
             +++   SQG GS++                   DWK  N N+     G+R + ++ EE+
Sbjct: 1860 KKNRFEGSQGRGSNSG------------------DWK--NRNRPPRTPGQRLDLYSSEEQ 1899

Query: 6529 KILVDVEPIMHSLRKILHDS--SDGSRLSPEDQSFIMENVFKHHPDKQAKVTNRIDYIMV 6702
             +L ++EPIM S+R+I+     +DG  L+ +DQ F++ENVF+HHPDK  K+   IDY+MV
Sbjct: 1900 DVLKEIEPIMQSIRRIMQQQGYNDGDPLAADDQLFVLENVFEHHPDKDTKMGAGIDYVMV 1959

Query: 6703 DKHESFKDSRCFYVVSCDGSSADFSYLKCMENFVKENYPEHAESFNKKYFR--RRRAETR 6876
            +KH SF+DSRCFYVV  DG   DFSY KC++N++++ YPE AESF  KYFR  R RAE  
Sbjct: 1960 NKHSSFQDSRCFYVVLKDGRREDFSYRKCLDNWIRKKYPELAESFFGKYFRKPRNRAEQT 2019

Query: 6877 SDNRQDQ 6897
            +  R DQ
Sbjct: 2020 ATPRGDQ 2026


>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score = 1422 bits (3681), Expect = 0.0
 Identities = 761/1580 (48%), Positives = 1024/1580 (64%), Gaps = 29/1580 (1%)
 Frame = +1

Query: 1852 SQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCESCGTAEQ 2031
            S  +L+G I  IKF LAT +EICT SI++  +SH SQL+NPFLGLPLE GKCESCGT+E 
Sbjct: 6    SSTILEGEITGIKFGLATHQEICTASISNCAISHASQLSNPFLGLPLEFGKCESCGTSEA 65

Query: 2032 EKCEGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKIGSSQAK-ETLSYSSCL 2208
             KCEGHFGYI+LP P++HP H++ELK +L+L+CLKC++MKK K  +  A       SSC 
Sbjct: 66   GKCEGHFGYIELPIPIFHPNHVSELKRMLSLLCLKCLKMKKNKFPTKNAGLAERMLSSC- 124

Query: 2209 YCRDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDNMCQSLLPSES 2388
             C D   ++I E+K +DG+  L+L   S+S+   GFWNFL+++GF +GD   ++LLP E 
Sbjct: 125  -CEDASQVSIGEIKPTDGSCSLQLKRPSKSRTPPGFWNFLERYGFRYGDGHIRTLLPCEV 183

Query: 2389 LKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXXXXXXLLK 2568
            +++L++IP+ET+K+LA KGYFPQDG+IL  IPVPPNCL VPE               +LK
Sbjct: 184  MEMLKRIPQETRKKLAAKGYFPQDGYILSQIPVPPNCLSVPEISDGVSVMSADPSISMLK 243

Query: 2569 RVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPH-ASRKFIVGTEAT 2745
            +VL  +E I+ SRSG PNF S  VE+ +LQA I +Y+++RGT K       +F V  E  
Sbjct: 244  KVLKQVEIIRSSRSGIPNFESQIVEANELQAIIDQYLQVRGTGKPSRDIDARFGVNKELN 303

Query: 2746 DCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDRVTEFNM 2925
              S K W EKM+TLFI KGSGFSSRSVITGDA++ +NE+GIP EIA+R+TFE++V + N+
Sbjct: 304  ASSTKAWLEKMRTLFIRKGSGFSSRSVITGDAFRRVNEVGIPYEIAQRITFEEKVNDHNI 363

Query: 2926 DRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINRPPSTHK 3105
              LQELVD +LCLTYKDG + Y++  GSKGHT+L+ GQ+++R+IMDGD+VF+NRPP+THK
Sbjct: 364  RYLQELVDSKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDLVFVNRPPTTHK 423

Query: 3106 HSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFSVEKQLL 3285
            HSLQA  VYVHDDH VKINPL+C PL ADFDGDCIHLFYPQSLAAKAEV+ELFSVEKQLL
Sbjct: 424  HSLQALQVYVHDDHVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLL 483

Query: 3286 SSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRNSGPFWT 3465
            SSH+   NLQ   D+LL+LK+ F+  FL++A AQQL+MF SS LP+PAL K+ ++  +WT
Sbjct: 484  SSHSGKPNLQLAADALLSLKMMFKKYFLDKAAAQQLAMFASSSLPRPALLKANSAHSYWT 543

Query: 3466 ISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGPKEAIQF 3645
              Q+LQ+ LP   DC G+ +L+ + EIL  DF+  ++               G ++ ++F
Sbjct: 544  AFQILQTALPAHFDCSGDNYLVNKSEILNIDFSTSSVAAVMNDIATSVFFEKGGEDVLKF 603

Query: 3646 FNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNELVDVQV 3825
            F+ LQPLLME LF +GFSV L DF + +  ++D++ ++Q+   +L  LR TYNE V+ Q+
Sbjct: 604  FDSLQPLLMENLFSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLRSTYNEFVEFQL 663

Query: 3826 DNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLYSKALVE 4005
             N +R++KVP+  FIL+ SALGDLID+KS+S+I K+            D+G+ YSK LVE
Sbjct: 664  QNRIRSVKVPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTLVE 723

Query: 4006 DIFSHYVTKYSNGAE----AYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXXXGLTEPGT 4173
            D+ S   +KY +  +     YGLV+S FFHGL+ +E ++H             GL+EPGT
Sbjct: 724  DVASLCHSKYPSDIDYPSAEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSEPGT 783

Query: 4174 LFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPVGVLAATAIS 4353
            LFK LMAILRDVVICYDGTVRNVCSNSI+QFEY  N         PAGEPVGVLAATA+S
Sbjct: 784  LFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVNIGSRPQHLFPAGEPVGVLAATAMS 843

Query: 4354 NPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKNFCKENAAF 4533
            NPAYKAVLDS+ ++NSSWELMKEILL +VN+KN   DRRV+LYLN+C CG+ +C+E AA 
Sbjct: 844  NPAYKAVLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRERAAC 903

Query: 4534 TVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVLNKSTEEIV 4713
             V+N LK+++L++ AV+F IEY   ++        +GLVGHIHL++  L+ LN    +I+
Sbjct: 904  LVKNQLKKVSLKDTAVEFMIEYNNQLSGLGSLINDAGLVGHIHLNEDMLRELNIGVHDIL 963

Query: 4714 RKCKDVISGYCKKKGHLSKVMERIH-----LSASECCSSEDHHGIS---SQLPCVQFTYL 4869
            +KC++ I+ + +KK    K     H     L ASE CS   HH  +   S  PC+ F +L
Sbjct: 964  QKCQETINSFRRKKVGKKKFNIGYHFKNTVLFASEHCSF--HHSCAEKRSDSPCLMF-FL 1020

Query: 4870 NETEDFE--KTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGE 5043
              T+D E   T+   A++ICP+LL+T++KGD R+ SANIIW+  D+ +W+R+   + KGE
Sbjct: 1021 QATDDLETTTTLQYYADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSQKGE 1080

Query: 5044 IALEVVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSV 5223
             AL++V+EK+ ++++GDAW+T+ D+CLPVLHL+D+RRSIPY I+QIQELLG+SCAFDQ+V
Sbjct: 1081 WALDIVLEKSVIKQSGDAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAV 1140

Query: 5224 QRLSTSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLT 5403
            QRLST++  VAKGVLKEHLIL+ANSMTC G+ +GFN  G+KAL R+L +QVPFTEATL T
Sbjct: 1141 QRLSTAVTMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFT 1200

Query: 5404 PMKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEF 5583
            P KCFE AAEK H D L SIV+SCSWGKHVAVGTG  F +LWD +++   +  G DV+ F
Sbjct: 1201 PRKCFERAAEKCHMDSLASIVASCSWGKHVAVGTGVRFDVLWDTREVELTQEGGLDVFNF 1260

Query: 5584 LDMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVERAY 5763
            L MV  T+   E T    G +VDDL           SPE N +F D   F+D  + +   
Sbjct: 1261 LHMVS-TANVEEATTGALGAEVDDLMLVDEMADSSFSPELNSSF-DRPVFEDLVEFDDKL 1318

Query: 5764 ADKRSFENWEGTKSRWEGITSSKCDIGSSQGWEKLDKSASPVHKPGIWSSWDVDKVQQQP 5943
             D          KS WE  +S   D    + W  +DK+   V  P +WSSW  +K + Q 
Sbjct: 1319 GDLPE-------KSNWEKDSSFHTDSNGGKDW-SVDKNVGTVAVPDVWSSWGTEKGKTQD 1370

Query: 5944 IESSKLEVERDGFCTWD-SVRVKKADCLSGQSDAWNEFVTDRNVDRPEKLLVWDAKPTSS 6120
              S++ +++       D S    K       +  W       N      +   D+   S 
Sbjct: 1371 SNSAEAQLDSKKSSVLDTSSAWGKNPAKENTTSTWGTTTASENDWCGRGVGEDDSATLSG 1430

Query: 6121 PTKHISDDSS-----FSKLDAGAHESFNAA--DSLKSFGDTSKKPEKGAWASIEM-QDGW 6276
                + + SS      ++ DA +    N A  +S  ++G T  +  +  W   E+ QD  
Sbjct: 1431 KKSGVLNTSSAWATNTAREDAASAWGTNPAKENSTSTWGTT--RANENDWCGREVGQDDS 1488

Query: 6277 AQRGVKGHERPLNIERWKENRANDPRDQGWRSQGWGSSNSADPASHKNHSSRSPVTA--D 6450
            A   VK          W  N A +     W            PA     S+    TA  +
Sbjct: 1489 ASLSVKKSSVLDTSSAWATNTAREDAASAW---------GKHPAKENTTSTWGTTTASEN 1539

Query: 6451 DW--KGWNTNKTFNFKGRRS 6504
            DW  +G   + + +  G++S
Sbjct: 1540 DWCGRGVGHDDSASLSGKKS 1559



 Score =  151 bits (381), Expect = 5e-33
 Identities = 93/274 (33%), Positives = 147/274 (53%), Gaps = 3/274 (1%)
 Frame = +1

Query: 6067 NVDRPEKLLVWDAKPTSSPTKHISDDSSFSKLDAGAHESFNAADSLKSFGDTSKKPEKGA 6246
            N  R +    W   P    T      ++ S+ D    E    A  ++       KP+  +
Sbjct: 1571 NTAREDATSAWGKNPAKENTTSTWGTTTASENDWCGRE----AGKVEPVDLQPTKPQDDS 1626

Query: 6247 WASIEMQDGWAQRGVKGHERPLNIERWKENRANDPRDQGWR-SQGWGSSNSADPASHKNH 6423
             AS+    GW      G+    N  +W ++R +  +   +  ++ W SS       +KN 
Sbjct: 1627 -ASLS---GWDSPTGDGNSGERN-HQWGQHRGDQTKKNRFEGARNWVSSPGE--WKNKNR 1679

Query: 6424 SSRSPVTADDWKGWNTNKTFNFKGRRSESFTPEEEKILVDVEPIMHSLRKILHDS--SDG 6597
              +SP   +D         +    +R + FT EE+ +L ++EP+M SLR+I+H S  +DG
Sbjct: 1680 PPKSPGMVND--NSTMGALYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGYNDG 1737

Query: 6598 SRLSPEDQSFIMENVFKHHPDKQAKVTNRIDYIMVDKHESFKDSRCFYVVSCDGSSADFS 6777
              LS +DQSF+++NVF +HPDK AK+   ID++ V++H SF+DSRCF+VVS DG + DFS
Sbjct: 1738 DPLSGDDQSFVLDNVFNYHPDKAAKMGCGIDHLTVNRHGSFQDSRCFFVVSTDGRTEDFS 1797

Query: 6778 YLKCMENFVKENYPEHAESFNKKYFRRRRAETRS 6879
            Y KC++N+++E +P+ AE+F  KYF RR    R+
Sbjct: 1798 YRKCLDNYIREKFPDLAETFIGKYFSRRGNRERN 1831


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score = 1411 bits (3652), Expect = 0.0
 Identities = 761/1584 (48%), Positives = 1044/1584 (65%), Gaps = 47/1584 (2%)
 Frame = +1

Query: 1861 VLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCESCGTAEQEKC 2040
            + +G I  I+F LA+  EICT S++ S +SH +QL+NPFLGLPLE GKCESCGT++   C
Sbjct: 9    IYEGEIVGIRFGLASHREICTASVSGSSISHATQLSNPFLGLPLEFGKCESCGTSDLGNC 68

Query: 2041 EGHFGYIQLPTPVYHPLHINELKNILNLVCLKCMRMKKLKIGSSQA--KETLSYSSCLYC 2214
            EGHFGYI+LP P+YHP H++ELK +L+L+CLKC++MKK K     A   E L  +SC  C
Sbjct: 69   EGHFGYIELPVPIYHPSHVSELKRMLSLLCLKCLKMKKNKFPVKNAGIAEQL-LASC--C 125

Query: 2215 RDLQPIAIKEVKTSDGAFCLELHVSSRSKLYDGFWNFLDKFGFHHGDN-----MCQSLLP 2379
            +D   ++I+EVK  D    L L V S  KL++GFWNFL+++GF +G +     + ++LLP
Sbjct: 126  QDASQVSIEEVK-KDTYSHLRLKVPSNKKLHEGFWNFLERYGFRYGGSPGEELLRRTLLP 184

Query: 2380 SESLKILQKIPEETKKRLAGKGYFPQDGFILQYIPVPPNCLYVPEXXXXXXXXXXXXXXX 2559
             E ++I +KIPEET+K+L GKGYFPQDG+ILQY+PVPPNCL VPE               
Sbjct: 185  CEVMEIFKKIPEETRKKLVGKGYFPQDGYILQYLPVPPNCLSVPEISDGITIMSTDPSTS 244

Query: 2560 LLKRVLCNIEHIKKSRSGAPNFVSHEVESKQLQASISEYMRLRGTTKVPH-ASRKFIVGT 2736
            +LK+VL   E IK SRS  PNF S EVE+ +LQ+ +++Y+++RG+ K       +F V  
Sbjct: 245  MLKKVLRQGEIIKSSRS-QPNFESLEVEANELQSIVNQYLQVRGSVKASRDIDARFGVNK 303

Query: 2737 EATDCSAKQWSEKMKTLFISKGSGFSSRSVITGDAYQGINEIGIPGEIAKRMTFEDRVTE 2916
            E  + S K W EKM+TLFI KGSGFSSRSVITGDAY+ +NE+GIP EIA+ +TFE++V+ 
Sbjct: 304  EEKNSSRKVWLEKMRTLFIRKGSGFSSRSVITGDAYKAVNEVGIPYEIARWITFEEKVSS 363

Query: 2917 FNMDRLQELVDKRLCLTYKDGLTRYAISVGSKGHTYLKVGQIINRQIMDGDIVFINRPPS 3096
             NM  LQELVD +LCLTYKDG + Y++  GSKGHT+LK+GQ+++R+IMDGDIVFINRPP+
Sbjct: 364  HNMKYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLKLGQVVHRRIMDGDIVFINRPPT 423

Query: 3097 THKHSLQAFSVYVHDDHTVKINPLVCAPLGADFDGDCIHLFYPQSLAAKAEVVELFSVEK 3276
            THKHSLQA  VYVH+D+TVKINPL+C PL ADFDGDC+HLFYPQS AAKAEV+ELFS+EK
Sbjct: 424  THKHSLQALRVYVHEDNTVKINPLICGPLSADFDGDCVHLFYPQSPAAKAEVLELFSLEK 483

Query: 3277 QLLSSHNKNLNLQFVNDSLLALKVAFRTTFLNRAMAQQLSMFLSSVLPQPALFKSRNSGP 3456
            Q+LSSH+  + LQ   DSLL+LK+ F+T F+++  AQQL MF SS LPQPA + + +  P
Sbjct: 484  QILSSHSGGMILQLACDSLLSLKIMFKTYFMDKIAAQQLVMFASSSLPQPAFWLTHSGDP 543

Query: 3457 FWTISQLLQSVLPDRVDCFGEKHLIRRGEILRFDFNRDALMPXXXXXXXXXXXXNGPKEA 3636
            FWT  Q+LQ+ LP  +DC+G++ LI+  +IL  DFNRD  +              G +E 
Sbjct: 544  FWTALQVLQTALPTSLDCYGDRFLIKGSDILVLDFNRD--VSVINDIGASICSEKGSEEV 601

Query: 3637 IQFFNLLQPLLMEILFLDGFSVNLRDFSVPKDVMEDLENSVQEILQVLNQLRLTYNELVD 3816
            ++FFN LQPLLME +F  GFSV L DFS+ ++V++++   +Q I  +L  LR TYNELV+
Sbjct: 602  LKFFNALQPLLMENIFAQGFSVGLEDFSISQEVIKNITKDIQLISPLLYHLRSTYNELVE 661

Query: 3817 VQVDNHLRTIKVPLVSFILKLSALGDLIDTKSESSITKVCXXXXXXXXXXXDRGKLYSKA 3996
            +Q++N +R  K P+ +FILK S++G+LID KS+S+I KV            DRGK YSK 
Sbjct: 662  LQLENQIRFAKAPVTNFILKSSSMGNLIDPKSDSAINKVVQQIGFLGLQISDRGKFYSKT 721

Query: 3997 LVEDIFSHYVTKYSNGAE----AYGLVKSSFFHGLNVFEELIHXXXXXXXXXXXXXGLTE 4164
            LVED+   Y  KY    +     +GL++S FFHGL+ +EE++H             GLTE
Sbjct: 722  LVEDVSCLYTRKYPENVDYPSAEHGLIRSCFFHGLDPYEEIVHSISTREVIVRSSRGLTE 781

Query: 4165 PGTLFKYLMAILRDVVICYDGTVRNVCSNSIVQFEYAFNREGNVLCDPPAGEPVGVLAAT 4344
            PGTLFK LMAILRDVVICYDGTVRNVCSNSI+QFEY      N+    PAGEPVGVLAAT
Sbjct: 782  PGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGRGSARNLY---PAGEPVGVLAAT 838

Query: 4345 AISNPAYKAVLDSSQAANSSWELMKEILLSRVNYKNAYSDRRVVLYLNDCYCGKNFCKEN 4524
            A+SNPAYKAVLDSS ++NSSWELMKEILL +  ++N   DRRV+LYLN C CG+ +C+E 
Sbjct: 839  AMSNPAYKAVLDSSPSSNSSWELMKEILLCKAIFRNELIDRRVILYLNHCGCGRKYCREQ 898

Query: 4525 AAFTVQNYLKRITLRECAVDFSIEYQKHITFHEGSETASGLVGHIHLDKMRLQVLNKSTE 4704
            A + VQN LK+++L++ AV+F IEY+   +F    +  +GLVGHIHL+++ L+ ++    
Sbjct: 899  ATYLVQNQLKKVSLKDTAVEFMIEYKNQSSF-SAVDMNAGLVGHIHLNEVLLKEMDIGMN 957

Query: 4705 EIVRKCKDVISGYCKKKGHLSKVMERIHLSASECCSSEDHHGI--SSQLPCVQFTYL-NE 4875
            EI++KC++ I+   KKK  L K +++  LS SECC+     G+  +S+ PC+  +   N 
Sbjct: 958  EILQKCEEAINSVRKKK--LGKHLKKAVLSVSECCTFH-KSGLDGTSEFPCLLISIRENM 1014

Query: 4876 TEDFEKTIHAMANVICPILLDTVVKGDHRVHSANIIWVGADSNSWVRNSCNTLKGEIALE 5055
             +  E++   +A+ ICP LL+T++KGD R+ SA I W+ +D+ S +R+  N+  GE+A++
Sbjct: 1015 NDTLEESSKILADSICPFLLETIIKGDSRISSAKITWLSSDTTS-IRSPQNSDMGELAVD 1073

Query: 5056 VVIEKNAVRKNGDAWQTIFDACLPVLHLVDSRRSIPYGIQQIQELLGISCAFDQSVQRLS 5235
            VV++K+A++++GDAW+ + D+CLPVLHL+D+RRSIPYGI+QIQELLGISCAFDQ+VQRLS
Sbjct: 1074 VVLDKSAIKRSGDAWRIVIDSCLPVLHLIDTRRSIPYGIKQIQELLGISCAFDQAVQRLS 1133

Query: 5236 TSIRAVAKGVLKEHLILVANSMTCTGSLLGFNKGGFKALFRSLKVQVPFTEATLLTPMKC 5415
            TS+  V+KGVLKEHLIL+ANSMT  G+L+GFN GG+KAL RSL VQVPFTEATL+TP +C
Sbjct: 1134 TSVSMVSKGVLKEHLILLANSMTYAGNLIGFNSGGYKALTRSLNVQVPFTEATLITPKRC 1193

Query: 5416 FETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEFLDMV 5595
            FE AAEK H D L SIV+SCSWGKHVAVGTG+ F ILWD +++  N+  G DV  FL MV
Sbjct: 1194 FERAAEKCHVDSLTSIVASCSWGKHVAVGTGSRFDILWDTRKVEFNQAGGVDVNNFLHMV 1253

Query: 5596 RITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPET----NMAFEDDTTFDDNTKVERAY 5763
                GE E + AC G ++DDL        +CLSPE        FED   F D ++ +   
Sbjct: 1254 STAYGE-EASTACLGEEIDDLMPGDDIAELCLSPENFNSDRPVFEDIDEFQDISEKDLP- 1311

Query: 5764 ADKRSFENWEGTKSRWEGITSSKCDIGSSQGWEKLDKSASPVHKPGIWSSWDVDKVQQQP 5943
                        KS W+ ++S +    S + W   +   +   K  + SSW     ++Q 
Sbjct: 1312 -----------GKSSWDNLSSFRSGSSSGKEWGSNNNVGT---KYDVGSSWGTANKEEQE 1357

Query: 5944 IESSKLEVERDGFCTWDS-------VRVKKADCLSGQSDAWNEFVTDRNVDRPEKLLVWD 6102
            +  SK E +      W++       +   K+D      +  N F + +  +  ++  VWD
Sbjct: 1358 VIPSKGEPDNSWSNGWENKNSGRMELETMKSDWRGDADERHNPF-SSKPQESSKRSDVWD 1416

Query: 6103 AKP---TSSPTKHISDDSSFSKLDAGAHESFNAADSLKSF--GDTSKKPEKGAWASIEMQ 6267
            A P   T++ ++ +S  + ++  +  +   ++ ADS  S   G  S+    GA  S    
Sbjct: 1417 ATPGWGTNTASEKVSSSTGWNSENISSGAGWSKADSDNSHAKGWNSENISSGAGWSKAGS 1476

Query: 6268 DGWAQRGVKGHERPLNIERWKENRANDPRDQGWRSQ------GWGSSNSADPASHKNHSS 6429
            D    +G K  E   +   W +  +++   +GW S+      GW  + S + +  K  +S
Sbjct: 1477 DNSHAKGWKS-ENISSGAGWSKADSDNSHAKGWNSENISSGAGWSKAGSDNSSHAKGWNS 1535

Query: 6430 RSPVTADDW----------KGWNT 6471
             +  +   W          KGWN+
Sbjct: 1536 ENISSGAGWSKADSDNSHAKGWNS 1559



 Score =  172 bits (437), Expect = 2e-39
 Identities = 124/392 (31%), Positives = 190/392 (48%), Gaps = 16/392 (4%)
 Frame = +1

Query: 5755 RAYADKRSFENWEGTK----SRWEGITSSKCDIGSSQGWEKLDKSASPVHKPGIWSSWDV 5922
            +A +D    + W        +RW    S      S+  W         + K   WS W  
Sbjct: 1643 KAGSDNSHAKGWNSENISSGARWSKADSDNTHAKSTD-WNTTSDRTKTMTK-NTWSGWHG 1700

Query: 5923 DKVQQQPIESSKLEVERDGFCTWDSVRVKKADCLSGQSDAWNEFVTDRNV--DRPEKLLV 6096
            +K +++ I S+K + +      W +V  ++       ++   EFV+      D+  +   
Sbjct: 1701 EKSEKEDILSTKSQQDLPRNSDWGAVSNRE-----NNAERAYEFVSKDQPLPDQVSEPCD 1755

Query: 6097 WDAKPTSSPTKHIS-----DDSSFSKLDAGAHESFNAADSLKSFGDTSKKPEKGAWASIE 6261
            WD K T  P K +S     +D  ++K DA + E     DS   +    K+       ++E
Sbjct: 1756 WDNKLT--PQKAVSGWLSSNDEGWTK-DANSSERKEPTDSPVVYNSWEKRTSSEISQNVE 1812

Query: 6262 MQ--DGWAQRGVKGHERPLNIERWKENRANDPRDQGWRSQGWGSSNSADPASHKNHSSRS 6435
                + W  R   G E     E W +   +  ++ G  S GWGS +S D    KNH  + 
Sbjct: 1813 SASFNSWLPRAGDGGEVEKPNE-WVKKSGSFKKNHGETSGGWGS-DSGDWKIKKNHPGKF 1870

Query: 6436 PVTADDWKGWNTN-KTFNFKGRRSESFTPEEEKILVDVEPIMHSLRKILHDS--SDGSRL 6606
            P   +D    NT+ + F    +R + FT EE+  L  +EP M S+R+I+H S  +DG  +
Sbjct: 1871 PRMNND----NTSVRLFTETRQRLDLFTSEEQDALSLIEPTMKSIRRIMHKSGYNDGDPI 1926

Query: 6607 SPEDQSFIMENVFKHHPDKQAKVTNRIDYIMVDKHESFKDSRCFYVVSCDGSSADFSYLK 6786
             PEDQSFI++NVF +HPDK AK+ + ID++M+ +H SF+DSRC YVVS DG   DFSY K
Sbjct: 1927 RPEDQSFIIDNVFNYHPDKAAKMGSGIDHLMISRHSSFQDSRCLYVVSTDGRKEDFSYRK 1986

Query: 6787 CMENFVKENYPEHAESFNKKYFRRRRAETRSD 6882
            C+ N +K  +P+ A+ F  KYFR+ +     D
Sbjct: 1987 CLGNLIKSRFPDVADEFLDKYFRKPKPGGNQD 2018


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score = 1409 bits (3646), Expect = 0.0
 Identities = 765/1636 (46%), Positives = 1031/1636 (63%), Gaps = 91/1636 (5%)
 Frame = +1

Query: 1834 MEDNLPSQLVLDGFIRSIKFSLATAEEICTYSINDSPVSHPSQLTNPFLGLPLESGKCES 2013
            ME+      +LD  I  I+FSLA  +EIC  +I+D P++H SQL+NPFLGLP+E GKCES
Sbjct: 1    MEEAPSCSSILDAEIVGIRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCES 60

Query: 2014 CGTAEQEKCEG--------------------------HFGYIQLPTPVYHPLHINELKNI 2115
            CGT+E  KCEG                          HFGYI+LP P+YHP HI ELK +
Sbjct: 61   CGTSEPGKCEGIDFFFXIFNVLHNTTXQVVFIFHLSGHFGYIELPIPIYHPNHITELKKM 120

Query: 2116 LNLVCLKCMRMKKLKIGSSQ---AKETLSYSSCLYCRDLQPIAIKEVKTSDGAFCLELHV 2286
            L+L+CLKC++MKK K  S     A+  LS  SC  C D   + I+E K +DGA  L+L V
Sbjct: 121  LSLLCLKCLKMKKTKFPSKNIGFAERLLS--SC--CEDASQVTIREAKKADGASYLQLKV 176

Query: 2287 SSRSKLYDGFWNFLDKFGFHHGDNMCQSLLPSESLKILQKIPEETKKRLAGKGYFPQDGF 2466
             SR+ L + FW+FL+++GF +GDN  ++LL     ++L+KIP ET+K+LAG+GY+PQDG+
Sbjct: 177  PSRTSLQERFWDFLERYGFRYGDNFTRTLLSVMVKEMLKKIPNETRKKLAGRGYYPQDGY 236

Query: 2467 ILQYIPVPPNCLYVPEXXXXXXXXXXXXXXXLLKRVLCNIEHIKKSRSGAPNFVSHEVES 2646
            ILQY+PVPPNCL VPE               +LK++L  +E IK SRSGAPNF SHEVE+
Sbjct: 237  ILQYLPVPPNCLSVPEISDGVTVMSSDPAVSMLKKILKQVEIIKGSRSGAPNFESHEVEA 296

Query: 2647 KQLQASISEYMRLRGTTKVPHA-SRKFIVGTEATDCSAKQWSEKMKTLFISKGSGFSSRS 2823
              LQ ++ +Y+++RGT K       +F V  E  D S K W EKM+TLFI KGSGFSSRS
Sbjct: 297  NDLQLAVDQYLQVRGTVKASRGIDARFGVNKELNDPSTKAWLEKMRTLFIRKGSGFSSRS 356

Query: 2824 VITGDAYQGINEIGIPGEIAKRMTFEDRVTEFNMDRLQELVDKRLCLTYKDGLTRYAISV 3003
            VITGDAY+ +NEIG+P E+A+R+TFE+RV+  N+  LQELVDK+LCLTY+DG + Y++  
Sbjct: 357  VITGDAYKLVNEIGVPFEVAQRITFEERVSVHNIRYLQELVDKKLCLTYRDGSSAYSLRE 416

Query: 3004 GSKGHTYLKVGQIINRQIMDGDIVFINRPPSTHKHSLQAFSVYVHDDHTVKINPLVCAPL 3183
            GS GHTYLK GQI++R+IMDGDIVFINRPP+THKHSLQA  VY+HDDH VKINPL+C PL
Sbjct: 417  GSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHVVKINPLICGPL 476

Query: 3184 GADFDGDCIHLFYPQSLAAKAEVVELFSVEKQLLSSHNKNLNLQFVNDSLLALKVAFRTT 3363
             ADFDGDCIHLFYPQS+AAKAEV+ LFSVEKQLLSSH+ NLNLQ  NDSLL+LK+ FR  
Sbjct: 477  SADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMFRKY 536

Query: 3364 FLNRAMAQQLSMFLSSVLPQPALFKSRNSGPFWTISQLLQSVLPDRVDCFGEKHLIRRGE 3543
            FL +A AQQL+MF+SS LP PAL   R+    WT  Q+LQ+VLP   DC G+ +LI+   
Sbjct: 537  FLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIKNSN 596

Query: 3544 ILRFDFNRDALMPXXXXXXXXXXXXNGPKEAIQFFNLLQPLLMEILFLDGFSVNLRDFSV 3723
             L+FDF+RDA+               GP+E ++FF+ LQPLLME +F +GFSV L D+S+
Sbjct: 597  FLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSM 656

Query: 3724 PKDVMEDLENSVQEILQVLNQLRLTYNELVDVQVDNHLRTIKVPLVSFILKLSALGDLID 3903
            P   ++ L+ ++Q +  +L QLR T+NELV++Q++NHLR++KVP  +FILKLS+LG L D
Sbjct: 657  PMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKLSSLGKLFD 716

Query: 3904 TKSESSITKVCXXXXXXXXXXXDRGKLYSKALVEDIFSHYVTKYSNG-----AEAYGLVK 4068
            +KSES+I KV            D+G+ YSK+L+ED+ S +  +YS+      +  +GLVK
Sbjct: 717  SKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRYSSDKIDYPSAEFGLVK 776

Query: 4069 SSFFHGLNVFEELIHXXXXXXXXXXXXXGLTEPGTLFKYLMAILRDVVICYDGTVRNVCS 4248
              FFHGL+ +EE++H             GLTEPGTLFK LMAILRDVVICYDGTVRNVCS
Sbjct: 777  GCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCS 836

Query: 4249 NSIVQFEYAFNREGNVLCDP----PAGEPVGVLAATAISNPAYKAVLDSSQAANSSWELM 4416
            NSI+Q EY        +  P    P GEPVGVLAATA+S PAYKAVLDS+ ++NSSW++M
Sbjct: 837  NSIIQLEYGMKAG---MMQPYSLFPPGEPVGVLAATAMSTPAYKAVLDSTPSSNSSWDMM 893

Query: 4417 KEILLSRVNYKNAYSDRRVVLYLNDCYCGKNFCKENAAFTVQNYLKRITLRECAVDFSIE 4596
            KEILL +V++KN   DRRV+LYLN+C CG+ +C ENAA+ V+++LK++TL++ A+DF IE
Sbjct: 894  KEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVTLKDAAMDFMIE 953

Query: 4597 YQKHITFHEGSETASGLVGHIHLDKMR--LQVLNKSTEEIVRKCKDVISGYCKKKGHLSK 4770
            Y +  T    S    GLVGH+HL+++R  L+ LN    E++R+C++ +S + KKK    K
Sbjct: 954  YNRQPT---PSGLGPGLVGHVHLNRVRMLLKELNIDMTEVLRRCQETMSSFKKKK---KK 1007

Query: 4771 VMERIHLSASECCSSEDHHGISS-QLPCVQFTYLNETEDFEKTIHAMANVICPILLDTVV 4947
            +   +  S SE C+    +G  S  +PC+ F +       E+T H +A+++ P+L +T++
Sbjct: 1008 IAHALRFSISEHCAFHQWNGEESIDMPCLIFWHQTRDVHLERTAHILADIVFPLLSETII 1067

Query: 4948 KGDHRVHSANIIWVGADSNSWVRNSCNTLKGEIALEVVIEKNAVRKNGDAWQTIFDACLP 5127
            KGD R+ SA++IW+  DS SW +N      GE+AL+V +EK+AV++NGDAW+ + D CLP
Sbjct: 1068 KGDPRIKSASVIWISPDSTSWQKNPSRWQDGELALDVCLEKSAVKQNGDAWRNVLDCCLP 1127

Query: 5128 VLHLVDSRRSIPYGIQQIQELLGISCAFDQSVQRLSTSIRAVAKGVLKEHLILVANSMTC 5307
            VLHL+D+RRS+PY I+Q+QELLGISCAFDQ +QRLS S+  V+KGVL +HLIL+ANSMTC
Sbjct: 1128 VLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKSVSMVSKGVLGDHLILLANSMTC 1187

Query: 5308 TGSLLGFNKGGFKALFRSLKVQVPFTEATLL----------------------------T 5403
            TG+++GFN GG+KAL R+L +QVPFTEATL                             T
Sbjct: 1188 TGNMIGFNSGGYKALSRALNIQVPFTEATLFVSPFHSLVLSLYMKFNFFFLFFLNGXYTT 1247

Query: 5404 PMKCFETAAEKSHSDLLGSIVSSCSWGKHVAVGTGTNFQILWDNQQIANNEVVGKDVYEF 5583
            P KCFE AAEK H D L SIV+SCSWGKHVAVGTG+ F ILWD +++   +    DVY F
Sbjct: 1248 PRKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNF 1307

Query: 5584 LDMVRITSGEMEVTDACFGTDVDDLXXXXXXXGVCLSPETNMAFEDDTTFDDNTKVERAY 5763
            L MVR    E E T AC G +++D+        + LSPE   +  +   F+D+ + E   
Sbjct: 1308 LHMVRSGKSE-EPTSACLGEEIEDIMVEDEYGELTLSPEP-FSTSEKPVFEDSAEFEHC- 1364

Query: 5764 ADKRSFENWEGTKSRWEGITSSKCDIGSSQGWEKLDKSASPVHKPG-IWSSWDVDKVQQQ 5940
                  +N+ G +S+WE   S          WE  +   +     G  WS W        
Sbjct: 1365 -----LDNYPG-ESKWEKAPSLGAVSTGGGQWESNENGKATNSSDGNDWSGWGRKAEPDV 1418

Query: 5941 PIESSKLEVERDGFCTWDSVRV--KKADCLSGQSDAWNEFVTDR-------NVDRPEKLL 6093
             + +++   E      WD+      KA   S  +D W+   T         ++++  K  
Sbjct: 1419 TVTNAQ---ENTSNSAWDTTSSWGNKATNSSNDND-WSNCSTKEVERDSFTSMEKTPKSG 1474

Query: 6094 VWDAKPT-SSPTKHIS--------DDSSFSKLDAGAHESFNAADSLKSFGDTSKKPEKGA 6246
             WD+  T  + TK  S          S +S L     E+ +A          S   E  A
Sbjct: 1475 GWDSASTWGTKTKDDSFKRETAPKKSSQWSGLQKDKAETQDAFHKKAEMASKSGGWEDKA 1534

Query: 6247 WA--SIEMQDGWAQRGVKGHERPLNIERWKENRANDPRDQGWRSQGWGSSNSADPASHKN 6420
            W+  + + +D W+ + VK       ++          ++   ++ GWGS+      S  +
Sbjct: 1535 WSRGTSKTEDNWSSQ-VKDKAESFQVQ---------VQEVSSKTNGWGSTGGWTKNSGGD 1584

Query: 6421 HSSRSPVTADDWKGWN 6468
            H S +        GWN
Sbjct: 1585 HQSEA--------GWN 1592



 Score =  169 bits (429), Expect = 1e-38
 Identities = 104/276 (37%), Positives = 145/276 (52%), Gaps = 25/276 (9%)
 Frame = +1

Query: 6196 DSLKSFGDTSKKPEKGAWASIEMQD----------------GWAQRGVKGHERPLNIERW 6327
            DSL S+G   +  E+    S E QD                GW Q+     + P     W
Sbjct: 1747 DSLGSWGQPQRASEE---CSRESQDDSSTQFSQLKPPETSLGWEQQ-----KSPEVSHGW 1798

Query: 6328 KENRANDPR--DQGWR-----SQGWGSSNSADPASHKNHSSRSPVTADDWKGWNTNKTFN 6486
              N+ +  +    GW      S+GWG  N+ +  + KN   +SP  ++D    N    + 
Sbjct: 1799 GSNKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPKSPGMSND--DANLRALYT 1855

Query: 6487 FKGRRSESFTPEEEKILVDVEPIMHSLRKILHDS--SDGSRLSPEDQSFIMENVFKHHPD 6660
              G+R + FT EE+ IL D+EPIM S+RK++H S  +DG  LS EDQSF++++VF  HPD
Sbjct: 1856 ASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPD 1915

Query: 6661 KQAKVTNRIDYIMVDKHESFKDSRCFYVVSCDGSSADFSYLKCMENFVKENYPEHAESFN 6840
            K AK+   ID+ MV +H SF++SRCFYVV+ DG   DFSY KC++NF+K  YP+ AE F 
Sbjct: 1916 KAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFV 1975

Query: 6841 KKYFRRRRAETRSDNRQDQQQ*LRGVARTNNNNRGV 6948
             KYFR+ R     D         R  A   N N+ +
Sbjct: 1976 AKYFRKPRPNRNRD---------RNPASEENENKSI 2002