BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium22_contig00006334
         (799 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007044696.1| RNA polymerases N / 8 kDa subunit [Theobroma...   149   1e-33
ref|XP_006828771.1| hypothetical protein AMTR_s00001p00093860 [A...   148   3e-33
ref|XP_002263065.1| PREDICTED: DNA-directed RNA polymerases I, I...   146   1e-32
ref|XP_006381558.1| hypothetical protein POPTR_0006s13850g [Popu...   146   1e-32
ref|XP_007225838.1| hypothetical protein PRUPE_ppa014395mg [Prun...   145   2e-32
gb|ABF70104.1| DNA-directed RNA polymerase II 8.2 kDa polypeptid...   144   3e-32
ref|XP_004297393.1| PREDICTED: DNA-directed RNA polymerases I, I...   144   4e-32
gb|ABK20909.1| unknown [Picea sitchensis] gi|116781551|gb|ABK221...   144   5e-32
ref|XP_003578831.1| PREDICTED: DNA-directed RNA polymerases I, I...   143   6e-32
ref|XP_004489826.1| PREDICTED: DNA-directed RNA polymerases I, I...   143   8e-32
dbj|BAJ94836.1| predicted protein [Hordeum vulgare subsp. vulgar...   143   8e-32
gb|EXB99107.1| DNA-directed RNA polymerases I, II, and III subun...   142   1e-31
ref|XP_006662796.1| PREDICTED: DNA-directed RNA polymerase subun...   142   1e-31
gb|AFK43820.1| unknown [Medicago truncatula]                          142   1e-31
ref|XP_003613211.1| DNA-directed RNA polymerases I, II, and III ...   142   1e-31
ref|NP_001067421.1| Os11g0194800 [Oryza sativa Japonica Group] g...   142   1e-31
ref|NP_001066312.1| Os12g0180400 [Oryza sativa Japonica Group] g...   142   1e-31
ref|XP_007136334.1| hypothetical protein PHAVU_009G036800g [Phas...   142   2e-31
ref|XP_006391977.1| hypothetical protein EUTSA_v10023792mg [Eutr...   142   2e-31
gb|EMS59971.1| DNA-directed RNA polymerases I, II, and III subun...   142   2e-31

>ref|XP_007044696.1| RNA polymerases N / 8 kDa subunit [Theobroma cacao]
           gi|508708631|gb|EOY00528.1| RNA polymerases N / 8 kDa
           subunit [Theobroma cacao]
          Length = 113

 Score =  149 bits (376), Expect = 1e-33
 Identities = 71/84 (84%), Positives = 76/84 (90%)
 Frame = -3

Query: 770 RENQRECERKAGEMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRR 591
           RE  +  E++   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRR
Sbjct: 30  RELGKSQEQELKRMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRR 89

Query: 590 MLMTHVDLIEKLLNYNSLEKNEAS 519
           MLMTHVDLIEKLLNYN+LEK+E S
Sbjct: 90  MLMTHVDLIEKLLNYNTLEKSETS 113


>ref|XP_006828771.1| hypothetical protein AMTR_s00001p00093860 [Amborella trichopoda]
           gi|586757438|ref|XP_006853572.1| hypothetical protein
           AMTR_s00032p00243320 [Amborella trichopoda]
           gi|548833750|gb|ERM96187.1| hypothetical protein
           AMTR_s00001p00093860 [Amborella trichopoda]
           gi|548857225|gb|ERN15039.1| hypothetical protein
           AMTR_s00032p00243320 [Amborella trichopoda]
          Length = 71

 Score =  148 bits (373), Expect = 3e-33
 Identities = 69/71 (97%), Positives = 70/71 (98%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+LEKNE S
Sbjct: 61  NYNTLEKNETS 71


>ref|XP_002263065.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC5 [Vitis vinifera] gi|590591838|ref|XP_007017127.1|
           RNA polymerases N / 8 kDa subunit [Theobroma cacao]
           gi|297739069|emb|CBI28558.3| unnamed protein product
           [Vitis vinifera] gi|508787490|gb|EOY34746.1| RNA
           polymerases N / 8 kDa subunit [Theobroma cacao]
          Length = 71

 Score =  146 bits (368), Expect = 1e-32
 Identities = 68/71 (95%), Positives = 70/71 (98%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+LEK+E S
Sbjct: 61  NYNTLEKSETS 71


>ref|XP_006381558.1| hypothetical protein POPTR_0006s13850g [Populus trichocarpa]
           gi|118486243|gb|ABK94963.1| unknown [Populus
           trichocarpa] gi|550336264|gb|ERP59355.1| hypothetical
           protein POPTR_0006s13850g [Populus trichocarpa]
          Length = 71

 Score =  146 bits (368), Expect = 1e-32
 Identities = 68/71 (95%), Positives = 70/71 (98%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+LEK+E S
Sbjct: 61  NYNTLEKSEGS 71


>ref|XP_007225838.1| hypothetical protein PRUPE_ppa014395mg [Prunus persica]
           gi|462422774|gb|EMJ27037.1| hypothetical protein
           PRUPE_ppa014395mg [Prunus persica]
          Length = 71

 Score =  145 bits (366), Expect = 2e-32
 Identities = 68/71 (95%), Positives = 70/71 (98%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+LEK+E S
Sbjct: 61  NYNTLEKSENS 71


>gb|ABF70104.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative [Musa
           balbisiana]
          Length = 70

 Score =  144 bits (364), Expect = 3e-32
 Identities = 67/70 (95%), Positives = 69/70 (98%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEA 522
           NYN+LEK E+
Sbjct: 61  NYNTLEKTES 70


>ref|XP_004297393.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC5-like [Fragaria vesca subsp. vesca]
          Length = 71

 Score =  144 bits (363), Expect = 4e-32
 Identities = 67/71 (94%), Positives = 70/71 (98%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+LEK++ S
Sbjct: 61  NYNTLEKSDNS 71


>gb|ABK20909.1| unknown [Picea sitchensis] gi|116781551|gb|ABK22149.1| unknown
           [Picea sitchensis] gi|116789545|gb|ABK25286.1| unknown
           [Picea sitchensis]
          Length = 71

 Score =  144 bits (362), Expect = 5e-32
 Identities = 66/71 (92%), Positives = 70/71 (98%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+LE++E +
Sbjct: 61  NYNTLERSETN 71


>ref|XP_003578831.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC5-like [Brachypodium distachyon]
          Length = 71

 Score =  143 bits (361), Expect = 6e-32
 Identities = 67/71 (94%), Positives = 69/71 (97%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWD YLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+LEK EA+
Sbjct: 61  NYNTLEKTEAT 71


>ref|XP_004489826.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC5-like [Cicer arietinum]
          Length = 71

 Score =  143 bits (360), Expect = 8e-32
 Identities = 67/71 (94%), Positives = 69/71 (97%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWD+YLD LQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYNSLEK +AS
Sbjct: 61  NYNSLEKVDAS 71


>dbj|BAJ94836.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326520229|dbj|BAK04039.1| predicted protein [Hordeum
           vulgare subsp. vulgare]
          Length = 71

 Score =  143 bits (360), Expect = 8e-32
 Identities = 67/71 (94%), Positives = 68/71 (95%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWD YLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+LEK E S
Sbjct: 61  NYNTLEKTETS 71


>gb|EXB99107.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Morus
           notabilis]
          Length = 220

 Score =  142 bits (359), Expect = 1e-31
 Identities = 66/77 (85%), Positives = 72/77 (93%)
 Frame = -3

Query: 770 RENQRECERKAGEMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRR 591
           R ++RE +  + +MIIPVRCFTCGKVIGNKWDTYLDLLQADY+EGDALDALGLVRYCCRR
Sbjct: 105 RRSRREKDENSKKMIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRR 164

Query: 590 MLMTHVDLIEKLLNYNS 540
           MLMTHVDLIEKLLNYNS
Sbjct: 165 MLMTHVDLIEKLLNYNS 181


>ref|XP_006662796.1| PREDICTED: DNA-directed RNA polymerase subunit 10-like protein-like
           [Oryza brachyantha]
          Length = 74

 Score =  142 bits (359), Expect = 1e-31
 Identities = 66/71 (92%), Positives = 69/71 (97%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWD YLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+LEK +A+
Sbjct: 61  NYNTLEKTDAN 71


>gb|AFK43820.1| unknown [Medicago truncatula]
          Length = 71

 Score =  142 bits (359), Expect = 1e-31
 Identities = 66/71 (92%), Positives = 69/71 (97%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWD+YLD LQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN++EK EAS
Sbjct: 61  NYNTMEKAEAS 71


>ref|XP_003613211.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
           [Medicago truncatula] gi|355514546|gb|AES96169.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC5 [Medicago truncatula] gi|388514743|gb|AFK45433.1|
           unknown [Medicago truncatula]
          Length = 71

 Score =  142 bits (359), Expect = 1e-31
 Identities = 65/71 (91%), Positives = 70/71 (98%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWD+YLD LQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN++EK+EA+
Sbjct: 61  NYNTMEKHEAN 71


>ref|NP_001067421.1| Os11g0194800 [Oryza sativa Japonica Group]
           gi|62733950|gb|AAX96059.1| dna-directed rna polymerase
           ii 8.2 kda polypeptide (ec 2.7.7.6)(rpb10) (rp10)
           (abc10) [Oryza sativa Japonica Group]
           gi|77549069|gb|ABA91866.1| DNA-directed RNA polymerase
           II 8.2 kDa polypeptide, putative, expressed [Oryza
           sativa Japonica Group] gi|113644643|dbj|BAF27784.1|
           Os11g0194800 [Oryza sativa Japonica Group]
           gi|215766304|dbj|BAG98532.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 74

 Score =  142 bits (358), Expect = 1e-31
 Identities = 66/71 (92%), Positives = 68/71 (95%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWD YLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+LEK E +
Sbjct: 61  NYNTLEKTETT 71


>ref|NP_001066312.1| Os12g0180400 [Oryza sativa Japonica Group]
           gi|113648819|dbj|BAF29331.1| Os12g0180400 [Oryza sativa
           Japonica Group]
          Length = 72

 Score =  142 bits (358), Expect = 1e-31
 Identities = 66/71 (92%), Positives = 68/71 (95%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWD YLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+LEK E +
Sbjct: 61  NYNTLEKTETA 71


>ref|XP_007136334.1| hypothetical protein PHAVU_009G036800g [Phaseolus vulgaris]
           gi|561009421|gb|ESW08328.1| hypothetical protein
           PHAVU_009G036800g [Phaseolus vulgaris]
          Length = 71

 Score =  142 bits (357), Expect = 2e-31
 Identities = 65/71 (91%), Positives = 70/71 (98%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWDTYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+L+K++ S
Sbjct: 61  NYNALDKSDPS 71


>ref|XP_006391977.1| hypothetical protein EUTSA_v10023792mg [Eutrema salsugineum]
           gi|557088483|gb|ESQ29263.1| hypothetical protein
           EUTSA_v10023792mg [Eutrema salsugineum]
          Length = 71

 Score =  142 bits (357), Expect = 2e-31
 Identities = 64/69 (92%), Positives = 69/69 (100%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDA+GLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDAIGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNE 525
           NYN++EK++
Sbjct: 61  NYNTMEKSD 69


>gb|EMS59971.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
           [Triticum urartu]
          Length = 71

 Score =  142 bits (357), Expect = 2e-31
 Identities = 66/71 (92%), Positives = 68/71 (95%)
 Frame = -3

Query: 731 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 552
           MIIPVRCFTCGKVIGNKWD YLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 551 NYNSLEKNEAS 519
           NYN+LEK E +
Sbjct: 61  NYNTLEKTETN 71