BLASTX nr result
ID: Sinomenium22_contig00004045
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00004045
(820 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007039490.1| DNA-directed RNA polymerase I subunit rpa49,... 72 3e-15
ref|XP_006465974.1| PREDICTED: uncharacterized protein LOC102616... 67 2e-14
ref|XP_006426597.1| hypothetical protein CICLE_v10025597mg [Citr... 67 2e-14
ref|XP_006426598.1| hypothetical protein CICLE_v10025597mg [Citr... 67 2e-14
ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub... 62 3e-13
ref|XP_007215426.1| hypothetical protein PRUPE_ppa006096mg [Prun... 63 4e-13
ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub... 65 5e-13
emb|CBI35920.3| unnamed protein product [Vitis vinifera] 65 5e-13
ref|XP_006369274.1| hypothetical protein POPTR_0001s20580g [Popu... 64 1e-12
ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypep... 65 4e-12
gb|AFK41205.1| unknown [Lotus japonicus] 62 5e-12
ref|XP_006350715.1| PREDICTED: uncharacterized protein LOC102603... 62 7e-12
ref|XP_004305732.1| PREDICTED: uncharacterized protein LOC101303... 64 7e-12
ref|XP_004487983.1| PREDICTED: uncharacterized protein LOC101507... 69 1e-11
ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 ... 58 1e-11
ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221... 61 1e-11
ref|XP_004240985.1| PREDICTED: uncharacterized protein LOC101267... 61 3e-11
gb|EXB29690.1| DNA-directed RNA polymerase I subunit rpa49 [Moru... 59 4e-11
ref|XP_004290561.1| PREDICTED: DNA-directed RNA polymerase I sub... 60 4e-11
ref|XP_003595020.1| DNA-directed RNA polymerase I subunit rpa49 ... 59 1e-10
>ref|XP_007039490.1| DNA-directed RNA polymerase I subunit rpa49, putative [Theobroma
cacao] gi|508776735|gb|EOY23991.1| DNA-directed RNA
polymerase I subunit rpa49, putative [Theobroma cacao]
Length = 457
Score = 72.4 bits (176), Expect(2) = 3e-15
Identities = 36/72 (50%), Positives = 49/72 (68%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKR 191
++R L + +I L+KF DQ ++D SAK H IP I+ ++F MFTD G +PS ++
Sbjct: 324 EKRKLSCVFSFITHLVKFNDQFSMDRVASAKGHKIPSIIRQRFFTMFTDPGLRKPSRDQI 383
Query: 192 NLLISYVLVLTL 227
NLLISYVLVLTL
Sbjct: 384 NLLISYVLVLTL 395
Score = 36.2 bits (82), Expect(2) = 3e-15
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQFPKPRILKCQR 321
+LGCK R+ +F TLPVPL+FP LK QR
Sbjct: 424 NLGCKLVRENNSIFTTLPVPLKFPS-ETLKRQR 455
>ref|XP_006465974.1| PREDICTED: uncharacterized protein LOC102616137 [Citrus sinensis]
Length = 447
Score = 67.0 bits (162), Expect(2) = 2e-14
Identities = 35/72 (48%), Positives = 49/72 (68%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKR 191
+++ L + YI L+KFKDQ ++D SAK H IP IL++KF+ F+D+ S +K
Sbjct: 316 EKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKI 375
Query: 192 NLLISYVLVLTL 227
+LLISYVLVLTL
Sbjct: 376 HLLISYVLVLTL 387
Score = 38.9 bits (89), Expect(2) = 2e-14
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 226 LGCKFQRDYKVLFVTLPVPLQFPK 297
LGCK R+ +L+ TLPVPLQFPK
Sbjct: 417 LGCKLLREKNMLYATLPVPLQFPK 440
>ref|XP_006426597.1| hypothetical protein CICLE_v10025597mg [Citrus clementina]
gi|557528587|gb|ESR39837.1| hypothetical protein
CICLE_v10025597mg [Citrus clementina]
Length = 447
Score = 67.0 bits (162), Expect(2) = 2e-14
Identities = 35/72 (48%), Positives = 49/72 (68%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKR 191
+++ L + YI L+KFKDQ ++D SAK H IP IL++KF+ F+D+ S +K
Sbjct: 316 EKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKI 375
Query: 192 NLLISYVLVLTL 227
+LLISYVLVLTL
Sbjct: 376 HLLISYVLVLTL 387
Score = 38.9 bits (89), Expect(2) = 2e-14
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 226 LGCKFQRDYKVLFVTLPVPLQFPK 297
LGCK R+ +L+ TLPVPLQFPK
Sbjct: 417 LGCKLLREKNMLYATLPVPLQFPK 440
>ref|XP_006426598.1| hypothetical protein CICLE_v10025597mg [Citrus clementina]
gi|557528588|gb|ESR39838.1| hypothetical protein
CICLE_v10025597mg [Citrus clementina]
Length = 426
Score = 67.0 bits (162), Expect(2) = 2e-14
Identities = 35/72 (48%), Positives = 49/72 (68%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKR 191
+++ L + YI L+KFKDQ ++D SAK H IP IL++KF+ F+D+ S +K
Sbjct: 295 EKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKI 354
Query: 192 NLLISYVLVLTL 227
+LLISYVLVLTL
Sbjct: 355 HLLISYVLVLTL 366
Score = 38.9 bits (89), Expect(2) = 2e-14
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 226 LGCKFQRDYKVLFVTLPVPLQFPK 297
LGCK R+ +L+ TLPVPLQFPK
Sbjct: 396 LGCKLLREKNMLYATLPVPLQFPK 419
>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
[Glycine max]
Length = 424
Score = 62.0 bits (149), Expect(2) = 3e-13
Identities = 37/72 (51%), Positives = 43/72 (59%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKR 191
+++ L + YI LIKFKDQ + D SAK H IP IL KF NMF S EK
Sbjct: 293 EKKQLSCIFSYINHLIKFKDQHSFDVL-SAKGHKIPNILRHKFSNMFAVSESKRLPPEKI 351
Query: 192 NLLISYVLVLTL 227
+LLI YVLVLTL
Sbjct: 352 SLLICYVLVLTL 363
Score = 40.0 bits (92), Expect(2) = 3e-13
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQFPKPRILKCQR 321
HLGCK R + + TLPVPL+FP+ R K +R
Sbjct: 392 HLGCKISRQKNIFYATLPVPLKFPELRQRKRKR 424
>ref|XP_007215426.1| hypothetical protein PRUPE_ppa006096mg [Prunus persica]
gi|462411576|gb|EMJ16625.1| hypothetical protein
PRUPE_ppa006096mg [Prunus persica]
Length = 427
Score = 62.8 bits (151), Expect(2) = 4e-13
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = +3
Query: 36 YLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKRNLLISYVL 215
+ YI LIKFKDQ ++D +S+++H IP +L+ KF MF + S EK NLLISYVL
Sbjct: 302 FSYITHLIKFKDQHSMDGISSSRTHRIPNLLFHKFSTMFPTESK-GLSNEKTNLLISYVL 360
Query: 216 VLTL 227
VLTL
Sbjct: 361 VLTL 364
Score = 38.9 bits (89), Expect(2) = 4e-13
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQFPKPR 303
+LGCK R V+F TLPVPLQFP+ R
Sbjct: 393 NLGCKLVRKRNVMFATLPVPLQFPQLR 419
>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
vinifera]
Length = 421
Score = 65.1 bits (157), Expect(2) = 5e-13
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFT-DSGRHEPSVEK 188
++ L + YI L+K+KD+ ++D A+SAK H IPGIL +KF +MF DS + EK
Sbjct: 290 EKTTLACIFSYINHLLKYKDRNSMD-ASSAKHHKIPGILNQKFSSMFALDSDSRRLTEEK 348
Query: 189 RNLLISYVLVLTL 227
++LLISYVLVLTL
Sbjct: 349 KDLLISYVLVLTL 361
Score = 36.2 bits (82), Expect(2) = 5e-13
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQFPKPR 303
HLGCK KV TLPVPL FP+ R
Sbjct: 390 HLGCKLVSQNKVTMATLPVPLTFPRLR 416
>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
Length = 391
Score = 65.1 bits (157), Expect(2) = 5e-13
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFT-DSGRHEPSVEK 188
++ L + YI L+K+KD+ ++D A+SAK H IPGIL +KF +MF DS + EK
Sbjct: 260 EKTTLACIFSYINHLLKYKDRNSMD-ASSAKHHKIPGILNQKFSSMFALDSDSRRLTEEK 318
Query: 189 RNLLISYVLVLTL 227
++LLISYVLVLTL
Sbjct: 319 KDLLISYVLVLTL 331
Score = 36.2 bits (82), Expect(2) = 5e-13
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQFPKPR 303
HLGCK KV TLPVPL FP+ R
Sbjct: 360 HLGCKLVSQNKVTMATLPVPLTFPRLR 386
>ref|XP_006369274.1| hypothetical protein POPTR_0001s20580g [Populus trichocarpa]
gi|550347732|gb|ERP65843.1| hypothetical protein
POPTR_0001s20580g [Populus trichocarpa]
Length = 472
Score = 63.9 bits (154), Expect(2) = 1e-12
Identities = 35/72 (48%), Positives = 48/72 (66%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKR 191
+++ L + YI L+KFKDQ ++D A SA++H P I+ +KF MF R SV+K
Sbjct: 341 EKKRLSCIFSYITHLLKFKDQHSMDGAASARNHQFPSIIRQKFFEMFKPETR-RLSVDKI 399
Query: 192 NLLISYVLVLTL 227
+LLISYVLVLTL
Sbjct: 400 DLLISYVLVLTL 411
Score = 35.8 bits (81), Expect(2) = 1e-12
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQFPKPR 303
+LGCK +R+ VTL VPL+FP+P+
Sbjct: 440 NLGCKMEREKNKYLVTLSVPLEFPQPK 466
>ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus
communis] gi|223539445|gb|EEF41035.1| DNA-directed RNA
polymerase I 49 kDa polypeptide, putative [Ricinus
communis]
Length = 481
Score = 65.1 bits (157), Expect(2) = 4e-12
Identities = 36/72 (50%), Positives = 48/72 (66%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKR 191
+R+ + YI L+KFKD ++D +SAK+H P IL +KF+ MFT R P VEK
Sbjct: 350 ERKTYSRIFSYITHLLKFKDLHSMDGVSSAKNHKFPSILRQKFMGMFTPESRKLP-VEKI 408
Query: 192 NLLISYVLVLTL 227
+LLISYVLVL+L
Sbjct: 409 DLLISYVLVLSL 420
Score = 33.1 bits (74), Expect(2) = 4e-12
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQFPKPRILKCQR 321
+LGCK + K+ TLPVPL+FP R + +R
Sbjct: 449 NLGCKIVCENKLSLATLPVPLKFPVQRQRRARR 481
>gb|AFK41205.1| unknown [Lotus japonicus]
Length = 347
Score = 61.6 bits (148), Expect(2) = 5e-12
Identities = 33/72 (45%), Positives = 46/72 (63%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKR 191
+++ + + Y+ LIKFKDQ+T+ +SAKSH IP IL KF +MF + ++
Sbjct: 215 EKKKMSCIFSYLNHLIKFKDQRTMQGVSSAKSHKIPPILRYKFSSMFGATESRRLPNDEL 274
Query: 192 NLLISYVLVLTL 227
NLLI YVLVLTL
Sbjct: 275 NLLICYVLVLTL 286
Score = 36.2 bits (82), Expect(2) = 5e-12
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 226 LGCKFQRDYKVLFVTLPVPLQFPKPRILKCQR 321
LGCKF K+ + TLPVPL+FP + K +R
Sbjct: 316 LGCKFLSQNKISYATLPVPLKFPDSKQRKRKR 347
>ref|XP_006350715.1| PREDICTED: uncharacterized protein LOC102603859 [Solanum tuberosum]
Length = 431
Score = 62.4 bits (150), Expect(2) = 7e-12
Identities = 33/72 (45%), Positives = 47/72 (65%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKR 191
+++ L + +I L+KFKD+ ++D +SAK H PGIL +KF +MF+ S EK
Sbjct: 300 EKKRLAGIFSFITHLVKFKDKHSMDGVSSAKHHKFPGILSQKFTSMFSISDSKRLPEEKV 359
Query: 192 NLLISYVLVLTL 227
LLI+YVLVLTL
Sbjct: 360 TLLINYVLVLTL 371
Score = 35.0 bits (79), Expect(2) = 7e-12
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQFPKPR 303
+LGCK R+ V+ TLPVPL FP R
Sbjct: 400 YLGCKLVREKNVVLATLPVPLVFPSVR 426
>ref|XP_004305732.1| PREDICTED: uncharacterized protein LOC101303149 [Fragaria vesca
subsp. vesca]
Length = 425
Score = 63.5 bits (153), Expect(2) = 7e-12
Identities = 36/72 (50%), Positives = 44/72 (61%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKR 191
KR L + YI L+KFKD ++D +SAK H P ++ KF MF D+ S EK
Sbjct: 294 KRNKLSCIFSYITHLVKFKDLHSMDGFSSAKGHRFPSMIKDKFSTMF-DAVSKRLSTEKN 352
Query: 192 NLLISYVLVLTL 227
NLLISYVLVLTL
Sbjct: 353 NLLISYVLVLTL 364
Score = 33.9 bits (76), Expect(2) = 7e-12
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +1
Query: 226 LGCKFQRDYKVLFVTLPVPLQFPKPR 303
LGCK + V VTLPVPLQFP R
Sbjct: 394 LGCKVSKKNDVSTVTLPVPLQFPTVR 419
>ref|XP_004487983.1| PREDICTED: uncharacterized protein LOC101507754 [Cicer arietinum]
Length = 418
Score = 69.3 bits (168), Expect(3) = 1e-11
Identities = 38/62 (61%), Positives = 42/62 (67%)
Frame = +3
Query: 42 YIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKRNLLISYVLVL 221
YI LIKFKDQ ++D +SAKSH IP IL KF+ MF S EK NLLISYVLVL
Sbjct: 296 YINHLIKFKDQHSMDGVSSAKSHKIPTILRSKFLTMFDVSESKRLPTEKINLLISYVLVL 355
Query: 222 TL 227
TL
Sbjct: 356 TL 357
Score = 25.8 bits (55), Expect(3) = 1e-11
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQFPKPRILKCQR 321
HLG K K + LP+PL FP+ + K +R
Sbjct: 386 HLGGKIVFQDKKSYAILPIPLTFPELKQKKRKR 418
Score = 21.2 bits (43), Expect(3) = 1e-11
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 2 DELQKKKLACILS 40
DE +KKK CILS
Sbjct: 283 DESEKKKQFCILS 295
>ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
gi|355500854|gb|AES82057.1| DNA-directed RNA polymerase
I subunit rpa49 [Medicago truncatula]
Length = 412
Score = 57.8 bits (138), Expect(3) = 1e-11
Identities = 32/72 (44%), Positives = 44/72 (61%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKR 191
+++ L L+I L+KFKDQ ++D +S+K +P L+ +F MF S EK
Sbjct: 276 EKKKLSCILLFINYLVKFKDQHSMDGISSSKFEKLPYTLHHRFTAMFDVSESRRLPPEKL 335
Query: 192 NLLISYVLVLTL 227
NLLISYVLVLTL
Sbjct: 336 NLLISYVLVLTL 347
Score = 36.2 bits (82), Expect(3) = 1e-11
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQFPKPR 303
HLGCK KV + TLP+PL FP+ R
Sbjct: 376 HLGCKLISSQKVSYATLPIPLTFPQIR 402
Score = 21.9 bits (45), Expect(3) = 1e-11
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2
Query: 2 DELQKKKLACIL 37
D+ +KKKL+CIL
Sbjct: 273 DDSEKKKLSCIL 284
>ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221697 [Cucumis sativus]
gi|449480549|ref|XP_004155927.1| PREDICTED:
uncharacterized protein LOC101224839 [Cucumis sativus]
Length = 435
Score = 60.8 bits (146), Expect(2) = 1e-11
Identities = 32/72 (44%), Positives = 47/72 (65%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKR 191
+++ L + YI LIK+KDQ ++ +SAK H IP +L +KF +MF + S +K
Sbjct: 304 EKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKI 363
Query: 192 NLLISYVLVLTL 227
NLLIS+VLVL+L
Sbjct: 364 NLLISHVLVLSL 375
Score = 35.4 bits (80), Expect(2) = 1e-11
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQFPKPR 303
+LGCKF R + TLP+PLQFP+ R
Sbjct: 404 NLGCKFIRKNNLSLATLPIPLQFPELR 430
>ref|XP_004240985.1| PREDICTED: uncharacterized protein LOC101267531 [Solanum
lycopersicum]
Length = 410
Score = 61.2 bits (147), Expect(2) = 3e-11
Identities = 32/62 (51%), Positives = 42/62 (67%)
Frame = +3
Query: 42 YIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKRNLLISYVLVL 221
+I L+KFKD+ ++D +SAK H PGIL +KF +MF+ S EK LLI+YVLVL
Sbjct: 289 FITHLVKFKDKHSMDGVSSAKHHKFPGILSQKFTSMFSISDSKRLPEEKVTLLINYVLVL 348
Query: 222 TL 227
TL
Sbjct: 349 TL 350
Score = 33.9 bits (76), Expect(2) = 3e-11
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQFPKPR 303
+LGCK R+ ++ TLPVPL FP R
Sbjct: 379 YLGCKLVREKNIVLATLPVPLVFPGVR 405
>gb|EXB29690.1| DNA-directed RNA polymerase I subunit rpa49 [Morus notabilis]
Length = 438
Score = 58.5 bits (140), Expect(3) = 4e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Frame = +3
Query: 36 YLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMFTDSGRHEPSVEKRNLLISYVL 215
+ YI LIKFKD ++D +SAK H P IL +KF MF S + + ++ +LLISYVL
Sbjct: 314 FSYITHLIKFKDLHSMDGVSSAKRHKFPSILRQKFSAMFLSSEVKKLASKENDLLISYVL 373
Query: 216 VLTL 227
VLTL
Sbjct: 374 VLTL 377
Score = 35.4 bits (80), Expect(3) = 4e-11
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +1
Query: 226 LGCKFQRDYKVLFVTLPVPLQFPKPR 303
LGCK R + F TLPVPLQFP R
Sbjct: 407 LGCKLVRQNNLWFATLPVPLQFPDLR 432
Score = 20.4 bits (41), Expect(3) = 4e-11
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 2 DELQKKKLACILS 40
DE +KK+ ACI S
Sbjct: 303 DEEEKKRRACIFS 315
>ref|XP_004290561.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
[Fragaria vesca subsp. vesca]
Length = 402
Score = 60.1 bits (144), Expect(2) = 4e-11
Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 7/79 (8%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKF-----KDQQTI--DYANSAKSHTIPGILYKKFINMFTDSGRH 170
K+ L + YI LIKF K++Q I + A+SAK+H PGI+ KF +MF D+
Sbjct: 264 KKNKLTCIFSYIMHLIKFNDLHSKERQGISSEKASSAKAHRFPGIIRDKFASMF-DAESG 322
Query: 171 EPSVEKRNLLISYVLVLTL 227
S EKRNLLISYVLVLTL
Sbjct: 323 SLSTEKRNLLISYVLVLTL 341
Score = 34.7 bits (78), Expect(2) = 4e-11
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 226 LGCKFQRDYKVLFVTLPVPLQFP 294
LGCK + +L VTLPVPLQFP
Sbjct: 371 LGCKVSKKNNLLTVTLPVPLQFP 393
>ref|XP_003595020.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
gi|355484068|gb|AES65271.1| DNA-directed RNA polymerase
I subunit rpa49 [Medicago truncatula]
Length = 419
Score = 58.5 bits (140), Expect(2) = 1e-10
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = +3
Query: 12 KRRNLHVSYLYIGRLIKFKDQQTIDYANSAKSHTIPGILYKKFINMF--TDSGRHEPSVE 185
+++ L +I L+KFKDQ ++D +S+K +P LY +F MF T+S R P E
Sbjct: 283 EKKKLSCILSFINYLVKFKDQHSMDGISSSKFEKLPYTLYHRFTTMFDVTESRRLPP--E 340
Query: 186 KRNLLISYVLVLTL 227
K NLLISYVLVLTL
Sbjct: 341 KMNLLISYVLVLTL 354
Score = 34.7 bits (78), Expect(2) = 1e-10
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 223 HLGCKFQRDYKVLFVTLPVPLQF 291
HLGCKF KV + TLP+PL F
Sbjct: 383 HLGCKFISSQKVSYATLPIPLTF 405