BLASTX nr result
ID: Sinomenium22_contig00004023
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Sinomenium22_contig00004023
(1385 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [A... 387 e-105
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun... 385 e-104
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 382 e-103
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The... 382 e-103
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr... 381 e-103
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-... 379 e-102
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 378 e-102
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 378 e-102
gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus... 377 e-102
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-... 377 e-102
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu... 372 e-100
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-... 369 2e-99
emb|CAD20832.1| sigma factor [Spinacia oleracea] 363 7e-98
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-... 360 6e-97
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp.... 360 8e-97
ref|XP_006403640.1| hypothetical protein EUTSA_v10010251mg [Eutr... 358 3e-96
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 356 1e-95
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha... 355 3e-95
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps... 355 3e-95
gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana] 351 5e-94
>ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda]
gi|548857444|gb|ERN15250.1| hypothetical protein
AMTR_s00056p00209700 [Amborella trichopoda]
Length = 529
Score = 387 bits (993), Expect = e-105
Identities = 184/294 (62%), Positives = 239/294 (81%)
Frame = +1
Query: 499 SNSD*KIFLGFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSCRD 678
+ S+ ++ G LE+IR NLEE G+ SFS+WAEAAG++EK L+Q+LHFGW CRD
Sbjct: 234 AQSEVEMSRGVQEVAKLEKIRANLEENLGRDASFSVWAEAAGINEKVLKQQLHFGWFCRD 293
Query: 679 RLLRSTRSLVMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWIRK 858
+LLRSTR LVMYLA++YRG GI EDLLQAG++GVLQG+ERFDHTRGY+FSTYVQYWIRK
Sbjct: 294 KLLRSTRPLVMYLAKSYRGRGIGFEDLLQAGSLGVLQGAERFDHTRGYRFSTYVQYWIRK 353
Query: 859 SMLKLVAQHSKGIQIPMTVNRVINQIQRARRALYSLHGKYPDDVEISRFTGLSLAKIRSA 1038
S+ LVA+HS+G+QIPM +N+V+NQ +A+RAL+ +HG++P +VEI+ FTGLSL +R A
Sbjct: 354 SLSALVARHSRGVQIPMALNKVLNQTVKAKRALHQMHGRHPREVEIAEFTGLSLVNVRLA 413
Query: 1039 SKCPRIVGSIDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPRERQ 1218
+KC R+ GSID+++G + +ME T DT I+TPE++VM+ HM ++I E+L L+PRE+Q
Sbjct: 414 NKCLRVHGSIDQRIGDNWGATYMEVTADTFIETPEKMVMKQHMREAIHEVLVNLHPREKQ 473
Query: 1219 VLVLRYGLWDGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
VL+LRYGLWDG+CKSLEEIGR + TKEWIRKIEK AL KVR EEVQ NL+ +L
Sbjct: 474 VLMLRYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKMALEKVRKEEVQCNLNFFL 527
>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
gi|462419859|gb|EMJ24122.1| hypothetical protein
PRUPE_ppa003696mg [Prunus persica]
Length = 555
Score = 385 bits (988), Expect = e-104
Identities = 189/295 (64%), Positives = 237/295 (80%)
Frame = +1
Query: 496 VSNSD*KIFLGFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSCR 675
+S ++ ++ +G +LERI+ LE+E+GKV + WAEAAGV EK L Q L FGW C+
Sbjct: 259 ISKNEAEMSIGVKVIADLERIKETLEKETGKVATLRCWAEAAGVHEKVLLQHLRFGWYCQ 318
Query: 676 DRLLRSTRSLVMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWIR 855
D L+RSTRSLV+YLARNYRGLG+ L+DL+QAGN+G+LQG+ERFDH+RGY+FSTYVQYWIR
Sbjct: 319 DELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLGLLQGAERFDHSRGYRFSTYVQYWIR 378
Query: 856 KSMLKLVAQHSKGIQIPMTVNRVINQIQRARRALYSLHGKYPDDVEISRFTGLSLAKIRS 1035
KSM +LVAQH++G+QIP T+++ INQIQ+AR+A Y+ H KYPDD EI++ TGLSLA+IRS
Sbjct: 379 KSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYNSHMKYPDDEEIAKITGLSLARIRS 438
Query: 1036 ASKCPRIVGSIDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPRER 1215
AS C R+VGS+D KM S +MEFTPDT++K+PEE VMR HM+K I +LL+GLN RER
Sbjct: 439 ASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVMRQHMKKDIHDLLKGLNLRER 498
Query: 1216 QVLVLRYGLWDGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
QVLVLRYGL + KSLEEIGR F +KEWIRKIEK AL K+R EE + L HYL
Sbjct: 499 QVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKLRVEESHKYLSHYL 553
>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 560
Score = 382 bits (981), Expect = e-103
Identities = 189/313 (60%), Positives = 251/313 (80%), Gaps = 3/313 (0%)
Frame = +1
Query: 451 PSANGLYKASVTISR---VSNSD*KIFLGFMRAKNLERIRTNLEEESGKVVSFSIWAEAA 621
P+ + KAS + SR ++ ++ ++ G +LE+IRT LEEE+ +VVS S WAEAA
Sbjct: 246 PTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAA 305
Query: 622 GVDEKELQQRLHFGWSCRDRLLRSTRSLVMYLARNYRGLGIPLEDLLQAGNMGVLQGSER 801
G+D K LQQ+L FGW CRD L++STRSLV+Y ARNYRG GI LEDLLQAGN+GVL+G+ER
Sbjct: 306 GLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAER 365
Query: 802 FDHTRGYQFSTYVQYWIRKSMLKLVAQHSKGIQIPMTVNRVINQIQRARRALYSLHGKYP 981
FDHTRGY+FSTYVQYWIRKSM K+V++ ++GIQIP T++R I QIQ+AR+AL + +GKYP
Sbjct: 366 FDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYP 425
Query: 982 DDVEISRFTGLSLAKIRSASKCPRIVGSIDKKMGYSISVKFMEFTPDTTIKTPEEVVMRH 1161
DD EI+++TGLSLAKI SAS+C R+VGSID+K+G S++ K++EF PDT++++PEEVVMR
Sbjct: 426 DDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQ 485
Query: 1162 HMEKSISELLQGLNPRERQVLVLRYGLWDGQCKSLEEIGRTFKCTKEWIRKIEKSALTKV 1341
HM + + LL+ L+ RERQVL+LR+GL D Q KSLEEIGR F +KEW+R++EK +T++
Sbjct: 486 HMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRL 545
Query: 1342 RTEEVQRNLHHYL 1380
R EE RNL HY+
Sbjct: 546 RNEETCRNLRHYI 558
>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
C, putative [Theobroma cacao]
Length = 848
Score = 382 bits (980), Expect = e-103
Identities = 185/296 (62%), Positives = 237/296 (80%)
Frame = +1
Query: 493 RVSNSD*KIFLGFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSC 672
R++ ++ ++ G NLERIRT LEEE+G+ S S WAEAAGV EK LQQ L FGW C
Sbjct: 551 RIARNEAEMSKGVKVVANLERIRTTLEEETGRAASLSCWAEAAGVSEKVLQQHLRFGWYC 610
Query: 673 RDRLLRSTRSLVMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWI 852
RD LLRSTRSLV+Y ARNYRGLGI EDL+QAG++GVLQG+ERFDHTRGY+FSTYVQ+WI
Sbjct: 611 RDELLRSTRSLVLYFARNYRGLGIAHEDLIQAGSLGVLQGAERFDHTRGYRFSTYVQFWI 670
Query: 853 RKSMLKLVAQHSKGIQIPMTVNRVINQIQRARRALYSLHGKYPDDVEISRFTGLSLAKIR 1032
RKS+ ++VA+H++GIQ+P T++R I QIQ+AR+AL HGKYPD+ I++FTGLSLAKIR
Sbjct: 671 RKSVSRIVARHARGIQVPCTLSRAIVQIQKARKALSKSHGKYPDEDAIAKFTGLSLAKIR 730
Query: 1033 SASKCPRIVGSIDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPRE 1212
SA+KC R+VGSID+K+G ++ K++EF PD ++++PE+ VMR HM++ I +LL GL+ RE
Sbjct: 731 SANKCMRVVGSIDQKIGDCMNAKYLEFIPDLSVRSPEKTVMRQHMKEDIHDLLNGLDARE 790
Query: 1213 RQVLVLRYGLWDGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
RQV+VLRYGL KSLEEIGR F +KEWIR+IE A+ K+R +E RNL HYL
Sbjct: 791 RQVMVLRYGLKGSPPKSLEEIGRLFHVSKEWIRRIEMKAMKKLRDKETCRNLSHYL 846
>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
gi|557553989|gb|ESR64003.1| hypothetical protein
CICLE_v10007968mg [Citrus clementina]
Length = 534
Score = 381 bits (979), Expect = e-103
Identities = 188/336 (55%), Positives = 258/336 (76%)
Frame = +1
Query: 376 LLAVHLQPLFSSLKMQRFFSVSVPSPSANGLYKASVTISRVSNSD*KIFLGFMRAKNLER 555
LL++ + L LK FS P + N + + ++ ++ ++ G NLER
Sbjct: 205 LLSLPSEALQEGLKQPTIFS---PERALNSRGRRLM----IARNEAEMSKGVQVVANLER 257
Query: 556 IRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSCRDRLLRSTRSLVMYLARNYRG 735
I+T LE+ESGK S + WA+AAGV E+ L+Q L FGW CR+ L++STR LV++LARNYRG
Sbjct: 258 IKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRG 317
Query: 736 LGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWIRKSMLKLVAQHSKGIQIPMTV 915
LGIP DLLQAGN+GVLQG+ERFDHTRGY+FSTYVQYWIRKS+ K+VA+H++GI+IP +
Sbjct: 318 LGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKL 377
Query: 916 NRVINQIQRARRALYSLHGKYPDDVEISRFTGLSLAKIRSASKCPRIVGSIDKKMGYSIS 1095
NR I++IQ+AR+AL + HGKYP+D+EI+++TGLSLA+IRSAS+C RIVGSID+K+G ++
Sbjct: 378 NREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLN 437
Query: 1096 VKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPRERQVLVLRYGLWDGQCKSLEEI 1275
K++EF PD ++K+P+E+VMR HM+K + +L+ L+ RERQVLVLRYGL D + KSLEEI
Sbjct: 438 AKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEI 497
Query: 1276 GRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYLI 1383
G+ F +KEWIRK+EK A+TK+R E R+L H+L+
Sbjct: 498 GKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
Length = 534
Score = 379 bits (972), Expect = e-102
Identities = 178/296 (60%), Positives = 242/296 (81%)
Frame = +1
Query: 496 VSNSD*KIFLGFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSCR 675
++ ++ ++ G NLERI+T LE+ESGK + WA+AAGV E+ L+Q L FGW CR
Sbjct: 238 IARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCR 297
Query: 676 DRLLRSTRSLVMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWIR 855
+ L++STR LV++LARNYRGLGIP DLLQAGN+GVLQG+ERFDHTRGY+FSTYVQYWIR
Sbjct: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
Query: 856 KSMLKLVAQHSKGIQIPMTVNRVINQIQRARRALYSLHGKYPDDVEISRFTGLSLAKIRS 1035
KS+ K+VA+H++GI+IP +NR I++IQ+AR+AL + HGKYP+D+EI+++TGLSLA+IRS
Sbjct: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417
Query: 1036 ASKCPRIVGSIDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPRER 1215
AS+C RIVGSID+K+G ++ K++EF PD ++K+P+E+VMR HM+K + +L+ L+ RER
Sbjct: 418 ASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRER 477
Query: 1216 QVLVLRYGLWDGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYLI 1383
QVLVLRYGL D + KSLEEIG+ F +KEWIRK+EK A+TK+R E R+L H+L+
Sbjct: 478 QVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product
[Vitis vinifera]
Length = 561
Score = 378 bits (970), Expect = e-102
Identities = 184/285 (64%), Positives = 223/285 (78%)
Frame = +1
Query: 526 GFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSCRDRLLRSTRSL 705
G NLERIR LEEE G V S S WAEAAGVD+K LQQ+L FGW CRD LLRST SL
Sbjct: 275 GVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSL 334
Query: 706 VMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWIRKSMLKLVAQH 885
V+Y+ARNYRG+G+ ED+LQAGN+GVLQG+ERFDHT+GY+FSTYVQYWIRKSM LVA+H
Sbjct: 335 VLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARH 394
Query: 886 SKGIQIPMTVNRVINQIQRARRALYSLHGKYPDDVEISRFTGLSLAKIRSASKCPRIVGS 1065
++G++IP T+NR I QIQ+AR+ALY HG+YPDD EI++FTGLSLAKIRSA C R+VGS
Sbjct: 395 ARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGS 454
Query: 1066 IDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPRERQVLVLRYGLW 1245
D+ +EFTPDT+IK+PEE M+ K I LL+GL+PRERQ+LVLRYG
Sbjct: 455 TDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFG 514
Query: 1246 DGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
+ Q KSLEEIGR F +KEWIRK+EK+AL +R EE+ +NL HY+
Sbjct: 515 EQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYV 559
>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 378 bits (970), Expect = e-102
Identities = 184/285 (64%), Positives = 223/285 (78%)
Frame = +1
Query: 526 GFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSCRDRLLRSTRSL 705
G NLERIR LEEE G V S S WAEAAGVD+K LQQ+L FGW CRD LLRST SL
Sbjct: 325 GVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSL 384
Query: 706 VMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWIRKSMLKLVAQH 885
V+Y+ARNYRG+G+ ED+LQAGN+GVLQG+ERFDHT+GY+FSTYVQYWIRKSM LVA+H
Sbjct: 385 VLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARH 444
Query: 886 SKGIQIPMTVNRVINQIQRARRALYSLHGKYPDDVEISRFTGLSLAKIRSASKCPRIVGS 1065
++G++IP T+NR I QIQ+AR+ALY HG+YPDD EI++FTGLSLAKIRSA C R+VGS
Sbjct: 445 ARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGS 504
Query: 1066 IDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPRERQVLVLRYGLW 1245
D+ +EFTPDT+IK+PEE M+ K I LL+GL+PRERQ+LVLRYG
Sbjct: 505 TDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFG 564
Query: 1246 DGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
+ Q KSLEEIGR F +KEWIRK+EK+AL +R EE+ +NL HY+
Sbjct: 565 EQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYV 609
>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
Length = 478
Score = 377 bits (969), Expect = e-102
Identities = 176/285 (61%), Positives = 234/285 (82%)
Frame = +1
Query: 526 GFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSCRDRLLRSTRSL 705
G R LE+IRT LE+E+G++ S S WAEAAG+ +KELQQ LH+GW CRD LLRST SL
Sbjct: 191 GVKRVAELEKIRTKLEQETGQIASLSNWAEAAGIKKKELQQHLHYGWHCRDELLRSTHSL 250
Query: 706 VMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWIRKSMLKLVAQH 885
V+++ARNY GLG+ EDL+QAGN+GVLQG+ERFD +RGY+FSTYVQYWIRKSM LVA+H
Sbjct: 251 VLFIARNYSGLGVAFEDLIQAGNIGVLQGAERFDQSRGYKFSTYVQYWIRKSMSTLVAKH 310
Query: 886 SKGIQIPMTVNRVINQIQRARRALYSLHGKYPDDVEISRFTGLSLAKIRSASKCPRIVGS 1065
++G++IP T+++VINQ+ +AR+AL + +GKYPDD EI++FTGLS+AK+ SASKC R+VGS
Sbjct: 311 ARGVRIPCTLSKVINQVHKARKALTTSNGKYPDDYEIAKFTGLSVAKVMSASKCLRVVGS 370
Query: 1066 IDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPRERQVLVLRYGLW 1245
ID+K+G ++ K+ME DT++ +PEE V+R HM +S LL GL PRE+QV++LR+GL
Sbjct: 371 IDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHMLNDVSTLLNGLEPREKQVIILRFGLG 430
Query: 1246 DGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
+ QCKSLEEIGR F+ +KEWIRKIE+SAL K+R E+ + L+HY+
Sbjct: 431 NCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRNEDSLKILNHYV 475
>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
subsp. vesca]
Length = 545
Score = 377 bits (969), Expect = e-102
Identities = 189/313 (60%), Positives = 247/313 (78%), Gaps = 3/313 (0%)
Frame = +1
Query: 451 PSANGLYKASVTISR---VSNSD*KIFLGFMRAKNLERIRTNLEEESGKVVSFSIWAEAA 621
P+ + + +AS + SR ++ ++ ++ +G +LER++ LE+E+GKV + WAEAA
Sbjct: 230 PNPSSVRRASNSRSRRLMMAKNEAEMSVGVKVIADLERLKVTLEKETGKVPTLRCWAEAA 289
Query: 622 GVDEKELQQRLHFGWSCRDRLLRSTRSLVMYLARNYRGLGIPLEDLLQAGNMGVLQGSER 801
GVDEK LQQ+LHFGW C+D L+RSTRSLV+YLARNYRGLG+ L+DLLQAGN+G+LQG+ER
Sbjct: 290 GVDEKVLQQQLHFGWYCQDELVRSTRSLVLYLARNYRGLGVALDDLLQAGNLGLLQGAER 349
Query: 802 FDHTRGYQFSTYVQYWIRKSMLKLVAQHSKGIQIPMTVNRVINQIQRARRALYSLHGKYP 981
FD +RGY+FSTYVQYWIRKSM +LVAQH++GI+IP T+++ IN+IQ+AR+A Y+ H KYP
Sbjct: 350 FDPSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRIQKARKANYNSHMKYP 409
Query: 982 DDVEISRFTGLSLAKIRSASKCPRIVGSIDKKMGYSISVKFMEFTPDTTIKTPEEVVMRH 1161
DD EI++ TGLSLAKI SAS+C R+VGS+D K+ + +MEFTPD ++TPEE VMR
Sbjct: 410 DDEEIAKITGLSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFTPDIAVETPEESVMRQ 469
Query: 1162 HMEKSISELLQGLNPRERQVLVLRYGLWDGQCKSLEEIGRTFKCTKEWIRKIEKSALTKV 1341
HM+ I LL+GLN RE++VL LRYGL KSLEEIGR F +KEWIRKIEK+ALTK+
Sbjct: 470 HMKNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKIEKNALTKL 529
Query: 1342 RTEEVQRNLHHYL 1380
R EE +NL HYL
Sbjct: 530 RNEESNKNLSHYL 542
>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| hypothetical protein
POPTR_0006s25090g [Populus trichocarpa]
Length = 559
Score = 372 bits (956), Expect = e-100
Identities = 185/327 (56%), Positives = 245/327 (74%), Gaps = 10/327 (3%)
Frame = +1
Query: 433 SVSVPSPSANGLYKASVTISRVSNS----------D*KIFLGFMRAKNLERIRTNLEEES 582
S+S+PS + + R S+S + K+ G A +LERIRT LEEE+
Sbjct: 232 SLSLPSKTVQNNLPKPTFVKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEET 291
Query: 583 GKVVSFSIWAEAAGVDEKELQQRLHFGWSCRDRLLRSTRSLVMYLARNYRGLGIPLEDLL 762
G+VVS S WAEA G+D+K LQQ+L FGW CRD L+++T SLV+Y+ARNYRG+GI +EDL+
Sbjct: 292 GQVVSLSCWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLI 351
Query: 763 QAGNMGVLQGSERFDHTRGYQFSTYVQYWIRKSMLKLVAQHSKGIQIPMTVNRVINQIQR 942
QAGN+G+LQG+ERFD TRGY+FSTYVQYWIRKSMLK+V +H++GIQIP ++R IN+IQ+
Sbjct: 352 QAGNLGLLQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQK 411
Query: 943 ARRALYSLHGKYPDDVEISRFTGLSLAKIRSASKCPRIVGSIDKKMGYSISVKFMEFTPD 1122
AR+AL + HG+YPDD E+++FTGLSLAKI SA KC R+V S+D+K+G K+ EF PD
Sbjct: 412 ARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPD 471
Query: 1123 TTIKTPEEVVMRHHMEKSISELLQGLNPRERQVLVLRYGLWDGQCKSLEEIGRTFKCTKE 1302
+I+ PEE VMR HM + I +LL+GL+ RE+QV+VLRYG D Q KSL EIGR F+ +KE
Sbjct: 472 MSIQNPEEAVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKE 531
Query: 1303 WIRKIEKSALTKVRTEEVQRNLHHYLI 1383
+RKIEK + K+R E ++RNL Y+I
Sbjct: 532 RVRKIEKKIMIKLRDEGIRRNLSRYMI 558
>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum]
Length = 555
Score = 369 bits (946), Expect = 2e-99
Identities = 185/342 (54%), Positives = 247/342 (72%)
Frame = +1
Query: 352 AKNTKTLQLLAVHLQPLFSSLKMQRFFSVSVPSPSANGLYKASVTISRVSNSD*KIFLGF 531
++N + + H + + L+ +F+S S N K + + +S G
Sbjct: 219 SRNANDIITVQPHTKNIQEDLQQPKFYSGKRTQASRNKRQKIAKNEAEMSR-------GV 271
Query: 532 MRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSCRDRLLRSTRSLVM 711
LERIR+ LEEE+G+V +FS WAEAAG+++KELQQRLHFGW CRD LL+STRSLV+
Sbjct: 272 KLVAQLERIRSILEEETGRVATFSSWAEAAGIEQKELQQRLHFGWYCRDELLKSTRSLVL 331
Query: 712 YLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWIRKSMLKLVAQHSK 891
YLARNYRGLG+ EDL+QAGNMGVLQG+ RFDHTRGY+FSTYVQYWIRKS+ KLVAQH++
Sbjct: 332 YLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHAR 391
Query: 892 GIQIPMTVNRVINQIQRARRALYSLHGKYPDDVEISRFTGLSLAKIRSASKCPRIVGSID 1071
G++IP T+ +VINQI +AR+ L HGK+P D EI++FTGLS A+I ASKC R+VGSID
Sbjct: 392 GVRIPFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSID 451
Query: 1072 KKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPRERQVLVLRYGLWDG 1251
+K+G IS K +E TPD +I +PEE VMR + ++ LL+ L+P+E+QV+ R+GL
Sbjct: 452 QKVGDCISAKVLELTPDKSITSPEETVMRQDIVDNMYSLLESLDPKEQQVIYFRFGLETH 511
Query: 1252 QCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHY 1377
Q KSLEEIGR + +KEWIR+IE+ ALTK+R + +++ HY
Sbjct: 512 QRKSLEEIGRLYGVSKEWIRRIERRALTKLRNADYFQHITHY 553
>emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 363 bits (933), Expect = 7e-98
Identities = 170/295 (57%), Positives = 233/295 (78%)
Frame = +1
Query: 496 VSNSD*KIFLGFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSCR 675
++ ++ ++ G LE+++ LE+E+GK VS + WAEAAG+DEK LQ LHFGW CR
Sbjct: 253 IAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCR 312
Query: 676 DRLLRSTRSLVMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWIR 855
D LL+S RSLV+YL+R YRGLG+ EDL+QAGN+G+LQG+ERFDHTRGYQFSTYVQYWIR
Sbjct: 313 DELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWIR 372
Query: 856 KSMLKLVAQHSKGIQIPMTVNRVINQIQRARRALYSLHGKYPDDVEISRFTGLSLAKIRS 1035
K+M +LV++H +GI++P T++ IN++Q+AR+ L GK+PDDVE+S+ TGLSL KI+S
Sbjct: 373 KAMSQLVSRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKS 432
Query: 1036 ASKCPRIVGSIDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPRER 1215
A C RIVGS+D+K+G+ I++K++E TPDT ++ PE+ VM+ HM + +LLQ L+P+ER
Sbjct: 433 ADNCLRIVGSLDQKVGHFINMKYLECTPDTALEMPEKTVMKQHMRNDVHKLLQELDPKER 492
Query: 1216 QVLVLRYGLWDGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
+VL+ RYGL +G C SL E+G+ F +KEWIRK+EK ALTK+RTE+ Q NL HYL
Sbjct: 493 RVLIHRYGL-EGHCMSLHEVGKVFDVSKEWIRKMEKRALTKLRTEQNQTNLKHYL 546
>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
lycopersicum]
Length = 551
Score = 360 bits (925), Expect = 6e-97
Identities = 177/342 (51%), Positives = 249/342 (72%)
Frame = +1
Query: 352 AKNTKTLQLLAVHLQPLFSSLKMQRFFSVSVPSPSANGLYKASVTISRVSNSD*KIFLGF 531
++N + + H + + L+ +F+S + + +++ ++ ++ G
Sbjct: 215 SRNANDIITVQPHTKNIQEDLQQLKFYS-------GKRTHASRTKRQKIAKNEAEMSKGV 267
Query: 532 MRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSCRDRLLRSTRSLVM 711
LERIR+ LEEE+G+V +FS WA+AAG+++KELQQ LHFGW CRD LL+STRSLV+
Sbjct: 268 KLVAQLERIRSILEEETGQVATFSSWAKAAGIEQKELQQHLHFGWYCRDELLKSTRSLVL 327
Query: 712 YLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWIRKSMLKLVAQHSK 891
YLARNYRGLG+ EDL+QAGNMGVLQG+ RFDHTRGY+FSTYVQYWIRKS+ KLVAQH++
Sbjct: 328 YLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHAR 387
Query: 892 GIQIPMTVNRVINQIQRARRALYSLHGKYPDDVEISRFTGLSLAKIRSASKCPRIVGSID 1071
G++IP T+ +VINQI +AR+ L HGK+P D EI++FTGLS A+I ASKC R+VGSID
Sbjct: 388 GVRIPFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSID 447
Query: 1072 KKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPRERQVLVLRYGLWDG 1251
+K+G I+ K +E TPD ++ +PEE VMR + ++ LL+ L+P+E+QV+ R+GL
Sbjct: 448 QKVGDCINAKVLELTPDKSVTSPEEFVMRQDIVDNMYALLESLDPKEQQVIYFRFGLETH 507
Query: 1252 QCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHY 1377
Q KSLEEIGR + +KEWIR+IE+ ALTK+R+ + +++ HY
Sbjct: 508 QRKSLEEIGRLYGVSKEWIRRIERRALTKLRSADYFQHITHY 549
>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 360 bits (924), Expect = 8e-97
Identities = 175/297 (58%), Positives = 234/297 (78%), Gaps = 1/297 (0%)
Frame = +1
Query: 493 RVSNSD*KIFLGFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSC 672
R+S ++ ++ G ++ERIRT LEEESGKV S S WAEAAG++EK L + LH+GW C
Sbjct: 270 RISKNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYC 329
Query: 673 RDRLLRSTRSLVMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWI 852
RD LL+STRSLV++LARNYRGLGI EDL+QAG +GVLQG+ERFDHTRGY+FSTYVQYWI
Sbjct: 330 RDELLKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWI 389
Query: 853 RKSMLKLVAQHSKGIQIPMTVNRVINQIQRARRALYSLHG-KYPDDVEISRFTGLSLAKI 1029
RKSM +V++H++G+ IP ++ R INQIQ+AR+ L + HG KYP D +IS+ T LS+ KI
Sbjct: 390 RKSMSMMVSRHARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKI 449
Query: 1030 RSASKCPRIVGSIDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPR 1209
R+A++C ++VGSI+KK+G S KF+EFTPDTT+++PEE VMR + I +LL+GL PR
Sbjct: 450 RAANQCLKVVGSIEKKVGDCFSTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPR 509
Query: 1210 ERQVLVLRYGLWDGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
E+QV+VLRYGL + + KSLEEIG+ + +KEWIRKIE+ A+ K+R + +L +YL
Sbjct: 510 EKQVMVLRYGLQNYRPKSLEEIGKLLRVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 566
>ref|XP_006403640.1| hypothetical protein EUTSA_v10010251mg [Eutrema salsugineum]
gi|312281919|dbj|BAJ33825.1| unnamed protein product
[Thellungiella halophila] gi|557104759|gb|ESQ45093.1|
hypothetical protein EUTSA_v10010251mg [Eutrema
salsugineum]
Length = 562
Score = 358 bits (919), Expect = 3e-96
Identities = 177/297 (59%), Positives = 232/297 (78%), Gaps = 1/297 (0%)
Frame = +1
Query: 493 RVSNSD*KIFLGFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSC 672
R+S ++ ++ G ++ERIRT LEEESGKV S S WAEAAG++E L + LH+GW C
Sbjct: 264 RISRNEAEMSAGAKIVADMERIRTKLEEESGKVASMSCWAEAAGMNEILLMRNLHYGWYC 323
Query: 673 RDRLLRSTRSLVMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWI 852
RD LL+STRSLV++L+RNYRGLGI EDL+QAGN+GVLQG+ERFDHTRGY+FSTYVQYWI
Sbjct: 324 RDELLKSTRSLVLFLSRNYRGLGIAHEDLIQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 383
Query: 853 RKSMLKLVAQHSKGIQIPMTVNRVINQIQRARRALYSLHG-KYPDDVEISRFTGLSLAKI 1029
RKSM +V++H++G+ IP +V R ++QIQ+AR+ L + HG KYP D EIS+ TG SL KI
Sbjct: 384 RKSMSMMVSRHARGVYIPSSVIRTMSQIQKARKTLKTSHGIKYPADEEISKETGYSLKKI 443
Query: 1030 RSASKCPRIVGSIDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPR 1209
R+A++C ++VGSIDKK+G + KF+EFTPDTT+++PEE VMR + + +LLQGL PR
Sbjct: 444 RAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSAWRDVHDLLQGLEPR 503
Query: 1210 ERQVLVLRYGLWDGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
E+QV+VLRYGL + KSLEEIG+ K +KEWIRKIE+ A+ K+R + NL YL
Sbjct: 504 EKQVMVLRYGLQGFRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQANAENLRFYL 560
>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 356 bits (914), Expect = 1e-95
Identities = 173/297 (58%), Positives = 232/297 (78%), Gaps = 1/297 (0%)
Frame = +1
Query: 493 RVSNSD*KIFLGFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSC 672
R+S ++ ++ G ++ERIRT LEEESGKV S S WA AAG++EK L + LH+GW C
Sbjct: 273 RISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYC 332
Query: 673 RDRLLRSTRSLVMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWI 852
RD L++STRSLV++LARNYRG+GI EDL+QAG +GVLQG+ERFDHTRGY+FSTYVQYWI
Sbjct: 333 RDELVKSTRSLVLFLARNYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWI 392
Query: 853 RKSMLKLVAQHSKGIQIPMTVNRVINQIQRARRALYSLHG-KYPDDVEISRFTGLSLAKI 1029
RKSM +V++H++G+ IP ++ R IN IQ+AR+ L + HG KY D EI++ TG S+ KI
Sbjct: 393 RKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKI 452
Query: 1030 RSASKCPRIVGSIDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPR 1209
R+A++C ++VGSIDKK+G + KF+EFTPDTT+++PEE VMR + I +LL+GL PR
Sbjct: 453 RAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPR 512
Query: 1210 ERQVLVLRYGLWDGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
E+QV+VLRYGL D + KSLEEIG+ FK +KEWIRKIE+ A+ K+R + +L +YL
Sbjct: 513 EKQVMVLRYGLQDYRPKSLEEIGKLFKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569
>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
polymerase sigma factor sigC; Short=Sigma factor C;
Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
[Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
[Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis
thaliana] gi|133778870|gb|ABO38775.1| At3g53920
[Arabidopsis thaliana] gi|332645638|gb|AEE79159.1|
RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 355 bits (910), Expect = 3e-95
Identities = 173/297 (58%), Positives = 231/297 (77%), Gaps = 1/297 (0%)
Frame = +1
Query: 493 RVSNSD*KIFLGFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSC 672
R+S ++ ++ G ++ERIRT LEEESGKV S S WA AAG++EK L + LH+GW C
Sbjct: 273 RISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYC 332
Query: 673 RDRLLRSTRSLVMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWI 852
RD L++STRSLV++LARNYRGLGI EDL+QAG +GVLQG+ERFDHTRGY+FSTYVQYWI
Sbjct: 333 RDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWI 392
Query: 853 RKSMLKLVAQHSKGIQIPMTVNRVINQIQRARRALYSLHG-KYPDDVEISRFTGLSLAKI 1029
RKSM +V++H++G+ IP ++ R IN IQ+AR+ L + HG KY D EI++ TG S+ KI
Sbjct: 393 RKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKI 452
Query: 1030 RSASKCPRIVGSIDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPR 1209
R+A++C ++VGSIDKK+G + KF+EFTPDTT+++PEE VMR + I +LL+GL PR
Sbjct: 453 RAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPR 512
Query: 1210 ERQVLVLRYGLWDGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
E+QV+VLRYGL D + KSLEEIG+ K +KEWIRKIE+ A+ K+R + +L +YL
Sbjct: 513 EKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569
>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
gi|482559522|gb|EOA23713.1| hypothetical protein
CARUB_v10016920mg [Capsella rubella]
Length = 581
Score = 355 bits (910), Expect = 3e-95
Identities = 172/297 (57%), Positives = 231/297 (77%), Gaps = 1/297 (0%)
Frame = +1
Query: 493 RVSNSD*KIFLGFMRAKNLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSC 672
R+S ++ ++ G ++ERIRT LEEESGKV S S WAEAAG++EK L + LH+GW C
Sbjct: 283 RISRNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYC 342
Query: 673 RDRLLRSTRSLVMYLARNYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWI 852
RD LL+STRSLV++LARNYRGLGI EDL+QAG +GVLQG+ERFDH RGY+FSTYVQYWI
Sbjct: 343 RDELLKSTRSLVLFLARNYRGLGIAHEDLIQAGFVGVLQGAERFDHARGYKFSTYVQYWI 402
Query: 853 RKSMLKLVAQHSKGIQIPMTVNRVINQIQRARRALYSLHG-KYPDDVEISRFTGLSLAKI 1029
RKSM +V++H++G+ IP ++ R INQIQ+AR+ L + HG KYP D EIS+ T LS+ KI
Sbjct: 403 RKSMSMMVSRHARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEEISKLTSLSVKKI 462
Query: 1030 RSASKCPRIVGSIDKKMGYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPR 1209
R+A++C ++VGSI+ K+G S KF+EFTPDT +++PEE VMR + + +LL+GL PR
Sbjct: 463 RAANQCLKVVGSIENKVGDCFSTKFLEFTPDTMMESPEEAVMRQSARRDLHDLLEGLEPR 522
Query: 1210 ERQVLVLRYGLWDGQCKSLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
E+QV+VLRYGL D + KSLEEIG+ + +KEWIR+IE+ A+ K+R + +L +YL
Sbjct: 523 EKQVMVLRYGLQDYRPKSLEEIGKLLRVSKEWIRRIERRAMAKLRDQPNAEDLRYYL 579
>gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
Length = 291
Score = 351 bits (900), Expect = 5e-94
Identities = 170/280 (60%), Positives = 223/280 (79%), Gaps = 1/280 (0%)
Frame = +1
Query: 544 NLERIRTNLEEESGKVVSFSIWAEAAGVDEKELQQRLHFGWSCRDRLLRSTRSLVMYLAR 723
++ERIRT LEEESGKV S S WA AAG++EK L + LH+GW CRD L++STRSLV++LAR
Sbjct: 10 DMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLAR 69
Query: 724 NYRGLGIPLEDLLQAGNMGVLQGSERFDHTRGYQFSTYVQYWIRKSMLKLVAQHSKGIQI 903
NYRGLGI EDL+QAG +GVLQG+ERFDHTRGY+FSTYVQYWIRKSM +V++H++G+ I
Sbjct: 70 NYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHI 129
Query: 904 PMTVNRVINQIQRARRALYSLHG-KYPDDVEISRFTGLSLAKIRSASKCPRIVGSIDKKM 1080
P ++ R IN IQ+AR+ L + HG KY D EI++ TG S+ KIR+A++C ++VGSIDKK+
Sbjct: 130 PSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKV 189
Query: 1081 GYSISVKFMEFTPDTTIKTPEEVVMRHHMEKSISELLQGLNPRERQVLVLRYGLWDGQCK 1260
G + KF+EFTPDTT+++PEE VMR + I +LL+GL PRE+QV+VLRYGL D + K
Sbjct: 190 GDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPK 249
Query: 1261 SLEEIGRTFKCTKEWIRKIEKSALTKVRTEEVQRNLHHYL 1380
SLEEIG+ K +KEWIRKIE+ A+ K+R + +L +YL
Sbjct: 250 SLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 289