BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria22_contig00018551
         (1040 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   377   e-102
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   343   4e-92
ref|XP_003516775.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   342   7e-92
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   336   5e-90
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...   333   3e-89

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  377 bits (967), Expect = e-102
 Identities = 204/336 (60%), Positives = 241/336 (71%), Gaps = 18/336 (5%)
 Frame = +3

Query: 87   IFSTTPNSDQKYFYATAT-ASEKCETEKNSQWLILPPFTPTADGSSIGKNLYGHPDD--- 254
            +F  +    Q+  +AT+  A  +    K  +W  LP FTP  D SS+GK L GH  D   
Sbjct: 25   MFCISALDQQRSCFATSNDAVSEAHKSKKGKWFTLPAFTPVVDASSLGKVLSGHRTDLNT 84

Query: 255  ------AKTTALKWILKCCPNLPRSLVQKLFRLRQIRKECPN-------AEFKEQRPRRV 395
                  A TTALKW+++CCP LPRSLVQKLFRLRQ+R+E  N        + +E R +RV
Sbjct: 85   GNTTAGASTTALKWVVRCCPQLPRSLVQKLFRLRQVRRESYNMITSDIGVQNQEHRLKRV 144

Query: 396  GAKDLMDVGDRIFLPKSVDSKSPSAATENPILFNEEGLKFVQSLELYKDPAIIVINKPPG 575
             AKDLM++GD+I LP +V+ + PS   E     N+E + FV +LELYKDPAIIV+NKPPG
Sbjct: 145  AAKDLMNLGDQILLPITVE-EFPSEKHEYHC--NDEEINFVHNLELYKDPAIIVVNKPPG 201

Query: 576  MPVQGGVGIKRSLDELAAKYLRYGYKESPRLVHRLDRDSSGILVMGRTHLSTTVLHSIFR 755
            +PVQGG+GIKRSLDELAA YLRY   E PRLVHRLDRDSSGIL+MGRT  S T+LHSIFR
Sbjct: 202  LPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFR 261

Query: 756  EKTLGAS-NDLLGCKRILKKRYWALVIGCPRRQQGSISVPLVKVVVDNGKSERITVADNS 932
            EKT GAS ND+   KRIL++RYWALVIG PRR +G IS PL KVVVD+GKSERIT+ DN 
Sbjct: 262  EKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNV 321

Query: 933  CRSSGQHAMTEYRVIASSSRGYTWLELSPLTGRKHQ 1040
               S QHA+TEYRVI SS  GYTWLELSPLTGRKHQ
Sbjct: 322  QTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKHQ 357


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  343 bits (880), Expect = 4e-92
 Identities = 188/325 (57%), Positives = 232/325 (71%), Gaps = 16/325 (4%)
 Frame = +3

Query: 114  QKYFYATAT-----ASEKCETEKNS-----QWLILPPFTPTADGSSIGKNLYGHPD---D 254
            Q +++ T T     +S K +T KN+     ++  LPP+T T  GS++GK L         
Sbjct: 97   QSHYFTTTTITQTKSSTKDQTSKNNTKNTGKFFTLPPYTSTISGSALGKALSATATAKAS 156

Query: 255  AKTTALKWILKCCPNLPRSLVQKLFRLRQIRKECPNAEF--KEQRPRRVGAKDLMDVGDR 428
             +TTALKW+L+CCP LPR+LVQKLFRLRQ+++E  N      E + +RV AKDLM+VGDR
Sbjct: 157  TETTALKWVLRCCPELPRNLVQKLFRLRQVKRELLNVGDGEMEHKTKRVAAKDLMNVGDR 216

Query: 429  IFLPKSVDSKSPSAATENPILFNEEGLKFVQSLELYKDPAIIVINKPPGMPVQGGVGIKR 608
            IFLP SV +       +      E+   F++ LELYKD AIIV+NKPPGMPVQGG+GIK 
Sbjct: 217  IFLPISVQALP---FEKQKCHCGEKEANFIRGLELYKDEAIIVVNKPPGMPVQGGIGIKS 273

Query: 609  SLDELAAKYLRYGYKESPRLVHRLDRDSSGILVMGRTHLSTTVLHSIFREKTLGASNDLL 788
            S DELAA  L Y Y E PRLVHRLDRDSSGILVMGRT  ST VLHS+FREKT  ASN  +
Sbjct: 274  SFDELAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTMVLHSVFREKTFAASNHDI 333

Query: 789  G-CKRILKKRYWALVIGCPRRQQGSISVPLVKVVVDNGKSERITVADNSCRSSGQHAMTE 965
            G  +RIL+++YWALVIG PRRQ+G IS PL KVVVD+GKS+RITV +N+  +S QHA+T+
Sbjct: 334  GERRRILQRKYWALVIGSPRRQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQ 393

Query: 966  YRVIASSSRGYTWLELSPLTGRKHQ 1040
            YRV+  SS GY WLELSP+TGRKHQ
Sbjct: 394  YRVM-ESSHGYAWLELSPITGRKHQ 417


>ref|XP_003516775.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Glycine
            max]
          Length = 427

 Score =  342 bits (878), Expect = 7e-92
 Identities = 176/290 (60%), Positives = 220/290 (75%), Gaps = 1/290 (0%)
 Frame = +3

Query: 174  QWLILPPFTPTADGSSIGKNLYGHPDDAKTTALKWILKCCPNLPRSLVQKLFRLRQIRKE 353
            +WL LPP + ++  S     L   P    TTALKW+++CCP+LPR+LV KLFRLRQ+R  
Sbjct: 30   KWLTLPPVSASSSASVELNQLSSTP----TTALKWVVRCCPHLPRALVHKLFRLRQVRIH 85

Query: 354  CPNAEFKEQRPRRVGAKDLMDVGDRIFLPKSVDSK-SPSAATENPILFNEEGLKFVQSLE 530
             P    ++Q  +RV AKD ++ GDRI LP+SV  K +P+ +   P     + + F+++L 
Sbjct: 86   -PATVIQQQTFKRVAAKDTLNTGDRILLPQSVKVKQTPTHSHLTP-----QQINFIRTLV 139

Query: 531  LYKDPAIIVINKPPGMPVQGGVGIKRSLDELAAKYLRYGYKESPRLVHRLDRDSSGILVM 710
            +YKDPAI+V+NKPPGMPVQGG+ IKRSLD +AA  L YGY + PRLVHRLDRD SGILVM
Sbjct: 140  IYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVM 199

Query: 711  GRTHLSTTVLHSIFREKTLGASNDLLGCKRILKKRYWALVIGCPRRQQGSISVPLVKVVV 890
            GRTH STTVLHSIFREKT  AS+D+   KRIL++RYWALV+GCPRR +G ++  L KVVV
Sbjct: 200  GRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVV 259

Query: 891  DNGKSERITVADNSCRSSGQHAMTEYRVIASSSRGYTWLELSPLTGRKHQ 1040
            DNG+S+RIT+ DNS   S QHA+TEYRVIASSS+GYTWLEL+PLTGRKHQ
Sbjct: 260  DNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQ 309


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
            gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
            pseudourine synthase 4, mitochondrial; AltName: Full=RNA
            pseudouridylate synthase 4; AltName: Full=RNA-uridine
            isomerase 4; Flags: Precursor gi|11994467|dbj|BAB02469.1|
            unnamed protein product [Arabidopsis thaliana]
            gi|110737723|dbj|BAF00800.1| hypothetical protein
            [Arabidopsis thaliana] gi|134031916|gb|ABO45695.1|
            At3g19440 [Arabidopsis thaliana]
            gi|332642719|gb|AEE76240.1| RNA pseudourine synthase 4
            [Arabidopsis thaliana]
          Length = 477

 Score =  336 bits (862), Expect = 5e-90
 Identities = 184/320 (57%), Positives = 228/320 (71%), Gaps = 16/320 (5%)
 Frame = +3

Query: 129  ATATASEKCETEKNSQWLILPPFTPTADGSSIGKNLYGH-------PDDAKTTALKWILK 287
            +T + S     +   +WL LPPF+PT DG+++GK+L           D++KTTAL+WIL+
Sbjct: 39   STRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILR 98

Query: 288  CCPNLPRSLVQKLFRLRQIRKECPNA----EFKEQRPRRVGAKDLMDVGDRIFLPKSVDS 455
            C P+LPR+LVQKLFRLRQ+R+E   +    E +  + +RV AK+ ++VGDRI+LP SVD+
Sbjct: 99   CRPDLPRTLVQKLFRLRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDN 158

Query: 456  KSPSA--ATENPILFNEEGLKFVQSLELYKDPAIIVINKPPGMPVQGGVGIKRSLDELAA 629
             +P    A +     ++E  KFV SL LYKDPAIIV+NKP G+ VQGG GIK S+DELAA
Sbjct: 159  DTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAA 218

Query: 630  KYLRYGYKESPRLVHRLDRDSSGILVMGRTHLSTTVLHSIFREKTLGASNDLLGCK---R 800
              L++   ESPRLVHRLDRD SG+LV+ RT  + TVLHSIFREKT GAS    G K   +
Sbjct: 219  SCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGAS--AYGVKKNVK 276

Query: 801  ILKKRYWALVIGCPRRQQGSISVPLVKVVVDNGKSERITVADNSCRSSGQHAMTEYRVIA 980
             LK++Y ALVIGCP RQ+G IS PL KVVVD+GKSERITV DN    S QHA+TEYRVI 
Sbjct: 277  SLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIE 336

Query: 981  SSSRGYTWLELSPLTGRKHQ 1040
            SS  GYTWLEL PLTGRKHQ
Sbjct: 337  SSPHGYTWLELRPLTGRKHQ 356


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 477

 Score =  333 bits (855), Expect = 3e-89
 Identities = 181/309 (58%), Positives = 223/309 (72%), Gaps = 16/309 (5%)
 Frame = +3

Query: 162  EKNSQWLILPPFTPTADGSSIGKNLYGH-------PDDAKTTALKWILKCCPNLPRSLVQ 320
            +    WL LPPF+PT DG+++GK+L           D++KTTAL+WIL+C P+LPR+LVQ
Sbjct: 50   DSRGNWLTLPPFSPTIDGTAVGKDLLSDGDSVKASTDNSKTTALRWILRCRPDLPRTLVQ 109

Query: 321  KLFRLRQIRKECPNA----EFKEQRPRRVGAKDLMDVGDRIFLPKSVDSKSPSA--ATEN 482
            KLFRLRQ+R++   +    E +  + +RV AK+ ++VGDRI+LP SVD+ +P    A + 
Sbjct: 110  KLFRLRQVRRQMSLSVDGHELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPPTPPAKKE 169

Query: 483  PILFNEEGLKFVQSLELYKDPAIIVINKPPGMPVQGGVGIKRSLDELAAKYLRYGYKESP 662
                +EE  KFV SL LYKDPAIIV+NKP G+ VQGG GIK S+DELAA  L +   ESP
Sbjct: 170  SFQCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAATCLTFDKSESP 229

Query: 663  RLVHRLDRDSSGILVMGRTHLSTTVLHSIFREKTLGASNDLLGCK---RILKKRYWALVI 833
            RLVHRLDRD SG+LV+ RT  + TVLHSIFREKT GAS    G K   + LK++Y ALVI
Sbjct: 230  RLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTCGAS--AYGVKKNIKSLKRKYMALVI 287

Query: 834  GCPRRQQGSISVPLVKVVVDNGKSERITVADNSCRSSGQHAMTEYRVIASSSRGYTWLEL 1013
            GCPRRQ+G IS PL KVVVD+GKS+RITV DN    S QHA+TEY+VI SS  GYTWLEL
Sbjct: 288  GCPRRQKGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYKVIESSPHGYTWLEL 347

Query: 1014 SPLTGRKHQ 1040
             PLTGRKHQ
Sbjct: 348  RPLTGRKHQ 356