BLASTX nr result

ID: Scutellaria22_contig00016482 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria22_contig00016482
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004170676.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch...    67   2e-09
ref|XP_004134396.1| PREDICTED: DNA mismatch repair protein MSH1,...    65   6e-09
gb|ACA35268.1| DNA mismatch repair protein [Cucumis sativus]           65   6e-09
ref|XP_002314510.1| predicted protein [Populus trichocarpa] gi|2...    62   4e-08
ref|XP_002448138.1| hypothetical protein SORBIDRAFT_06g021950 [S...    60   1e-07

>ref|XP_004170676.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein MSH1,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 675

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
 Frame = +2

Query: 2   IYASVYAKDASRTNKLKSEQSSGIDIQSHPERELPPISPWSPT-IFSKEVERAVIRICEK 178
           +Y S YAK+A+           G+ +++    + P     S T +  K++ERA+ +IC+K
Sbjct: 503 LYLSNYAKEAN-----------GVIVKA----DQPKTETTSKTGVLWKKLERAITKICQK 547

Query: 179 KLSDFCRKNDVLESSSMKCILIGVKEQTPPSTIGVSSVYVIL 304
           KL +F R  + L  + ++C+LI  +E+ PPSTIG SSVYVIL
Sbjct: 548 KLIEFHRDKNTLTPAEIQCVLIDAREKPPPSTIGASSVYVIL 589


>ref|XP_004134396.1| PREDICTED: DNA mismatch repair protein MSH1, mitochondrial-like
            [Cucumis sativus]
          Length = 1122

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 29/55 (52%), Positives = 42/55 (76%)
 Frame = +2

Query: 140  KEVERAVIRICEKKLSDFCRKNDVLESSSMKCILIGVKEQTPPSTIGVSSVYVIL 304
            K++ERA+ +IC+KKL +F R  + L  + ++C+LI  +E+ PPSTIG SSVYVIL
Sbjct: 982  KKLERAITKICQKKLIEFHRDKNTLTPAEIQCVLIDAREKPPPSTIGASSVYVIL 1036


>gb|ACA35268.1| DNA mismatch repair protein [Cucumis sativus]
          Length = 1227

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 29/55 (52%), Positives = 42/55 (76%)
 Frame = +2

Query: 140  KEVERAVIRICEKKLSDFCRKNDVLESSSMKCILIGVKEQTPPSTIGVSSVYVIL 304
            K++ERA+ +IC+KKL +F R  + L  + ++C+LI  +E+ PPSTIG SSVYVIL
Sbjct: 1087 KKLERAITKICQKKLIEFHRDKNTLTPAEIQCVLIDAREKPPPSTIGASSVYVIL 1141


>ref|XP_002314510.1| predicted protein [Populus trichocarpa] gi|222863550|gb|EEF00681.1|
            predicted protein [Populus trichocarpa]
          Length = 1130

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 34/100 (34%), Positives = 51/100 (51%)
 Frame = +2

Query: 5    YASVYAKDASRTNKLKSEQSSGIDIQSHPERELPPISPWSPTIFSKEVERAVIRICEKKL 184
            YA  ++ D    +  ++  SSG     HP            T+  K++E A+  IC+KKL
Sbjct: 949  YAKGFSSDRIVNDSDEAHLSSGTTASLHPSTHSTKAVD---TVEKKDIENAITMICQKKL 1005

Query: 185  SDFCRKNDVLESSSMKCILIGVKEQTPPSTIGVSSVYVIL 304
             +  ++ +  E  S  C+ IG +EQ PPSTI  S VYV+L
Sbjct: 1006 IELYKQKNTSEVVSFHCVAIGAREQPPPSTISASCVYVML 1045


>ref|XP_002448138.1| hypothetical protein SORBIDRAFT_06g021950 [Sorghum bicolor]
            gi|241939321|gb|EES12466.1| hypothetical protein
            SORBIDRAFT_06g021950 [Sorghum bicolor]
          Length = 1059

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 27/55 (49%), Positives = 38/55 (69%)
 Frame = +2

Query: 140  KEVERAVIRICEKKLSDFCRKNDVLESSSMKCILIGVKEQTPPSTIGVSSVYVIL 304
            +EVE AV  IC+KKL D   K+ + E   + C+ +G +EQ PPST+G SS+YVI+
Sbjct: 918  REVESAVTMICKKKLLDLYNKSSIPELVEVVCVAVGAREQPPPSTVGRSSIYVII 972


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