BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria22_contig00008811
         (938 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig ...   252   1e-64
pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2 gi|302566180|pdb...   238   1e-60
pdb|3R9Y|A Chain A, Crystal Structure Of Stwhy2 K67a (Form I) gi...   236   6e-60
ref|XP_002888827.1| ATWHY2 [Arabidopsis lyrata subsp. lyrata] gi...   233   5e-59
gb|AAG51881.1|AC016162_2 unknown protein; 79476-81015 [Arabidops...   231   2e-58

>sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY2,
           mitochondrial; AltName: Full=Protein WHIRLY 2;
           Short=StWHY2; Flags: Precursor
           gi|298359665|gb|ADI77438.1| Why2 protein [Solanum
           tuberosum]
          Length = 238

 Score =  252 bits (643), Expect = 1e-64
 Identities = 133/228 (58%), Positives = 157/228 (68%), Gaps = 3/228 (1%)
 Frame = +3

Query: 135 QFLGKGMANEATNDFKLLRGITTHTGMSTATPKFEPGAG---AKIFAPYSIYKGKAALSA 305
           Q L K +  E          I T  G ST        AG    ++FAPYS++KGKAALSA
Sbjct: 13  QLLHKKLPGECVKGSIWQHAINTFAGFSTVRQNVVADAGKREGRVFAPYSVFKGKAALSA 72

Query: 306 YPLLPTYNKLESGDYRVDRCGVIMLTFWPSIGERKYDWDKRQKFALSATEVGSLISLGSK 485
            P LPT+N+L+SG  +++R GVIMLTFWPS+GERKYDW+KRQ FALSATEVGSLIS+G++
Sbjct: 73  EPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMGTR 132

Query: 486 DSCEFFHDPSMLSSNAGQVRKSLSIRAHADGSGYFXXXXXXXXXXXXXDRFVVPVSTAEF 665
           DS EFFHDPSMLSSNAGQVRKSLSI+ +ADGSGYF             DRF VPV+TAEF
Sbjct: 133 DSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEF 192

Query: 666 AVMRTAFSFALPHIMGWEQSIYKLPLRTNQSSPPPSAVSNPQGSEWDR 809
           AVMRTAFSFALPHIMGW++   +     +QS  P   V     +EWDR
Sbjct: 193 AVMRTAFSFALPHIMGWDRFTNRPSESISQS--PSKVVPQLMEAEWDR 238


>pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2 gi|302566180|pdb|3N1I|A Chain
           A, Crystal Structure Of A Stwhy2-Ere32 Complex
           gi|302566182|pdb|3N1J|A Chain A, Crystal Structure Of A
           Stwhy2-Dt32 Complex gi|302566184|pdb|3N1K|A Chain A,
           Crystal Structure Of A Stwhy2-Cere32 Complex
           gi|302566186|pdb|3N1L|A Chain A, Crystal Structure Of A
           Stwhy2-Rcere32 Complex
          Length = 178

 Score =  238 bits (608), Expect = 1e-60
 Identities = 114/156 (73%), Positives = 134/156 (85%)
 Frame = +3

Query: 255 KIFAPYSIYKGKAALSAYPLLPTYNKLESGDYRVDRCGVIMLTFWPSIGERKYDWDKRQK 434
           ++FAPYS++KGKAALSA P LPT+N+L+SG  +++R GVIMLTFWPS+GERKYDW+KRQ 
Sbjct: 10  RVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 69

Query: 435 FALSATEVGSLISLGSKDSCEFFHDPSMLSSNAGQVRKSLSIRAHADGSGYFXXXXXXXX 614
           FALSATEVGSLIS+G++DS EFFHDPSMLSSNAGQVRKSLSI+ +ADGSGYF        
Sbjct: 70  FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNN 129

Query: 615 XXXXXDRFVVPVSTAEFAVMRTAFSFALPHIMGWEQ 722
                DRF VPV+TAEFAVMRTAFSFALPHIMGW++
Sbjct: 130 NLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDR 165


>pdb|3R9Y|A Chain A, Crystal Structure Of Stwhy2 K67a (Form I)
           gi|347948613|pdb|3R9Z|A Chain A, Crystal Structure Of
           Stwhy2 K67a (Form Ii) gi|347948614|pdb|3RA0|A Chain A,
           Crystal Structure Of A Stwhy2 K67a-Dt32 Complex
          Length = 178

 Score =  236 bits (602), Expect = 6e-60
 Identities = 113/156 (72%), Positives = 133/156 (85%)
 Frame = +3

Query: 255 KIFAPYSIYKGKAALSAYPLLPTYNKLESGDYRVDRCGVIMLTFWPSIGERKYDWDKRQK 434
           ++FAPYS++KG AALSA P LPT+N+L+SG  +++R GVIMLTFWPS+GERKYDW+KRQ 
Sbjct: 10  RVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 69

Query: 435 FALSATEVGSLISLGSKDSCEFFHDPSMLSSNAGQVRKSLSIRAHADGSGYFXXXXXXXX 614
           FALSATEVGSLIS+G++DS EFFHDPSMLSSNAGQVRKSLSI+ +ADGSGYF        
Sbjct: 70  FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNN 129

Query: 615 XXXXXDRFVVPVSTAEFAVMRTAFSFALPHIMGWEQ 722
                DRF VPV+TAEFAVMRTAFSFALPHIMGW++
Sbjct: 130 NLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDR 165


>ref|XP_002888827.1| ATWHY2 [Arabidopsis lyrata subsp. lyrata]
           gi|297334668|gb|EFH65086.1| ATWHY2 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 242

 Score =  233 bits (594), Expect = 5e-59
 Identities = 125/217 (57%), Positives = 153/217 (70%), Gaps = 9/217 (4%)
 Frame = +3

Query: 186 LRGITTHTGMSTATPKFE----PGAGAKIFAPYSIYKGKAALSAYPLLPTYNKLESGDYR 353
           LRG  + +  ST    F     P    ++FAPYSI+KGKAALS  P+LP++ +++SG+ R
Sbjct: 30  LRGFASWSSSSTPGRGFSGKDAPKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLR 89

Query: 354 VDRCGVIMLTFWPSIGERKYDWDKRQKFALSATEVGSLISLGSKDSCEFFHDPSMLSSNA 533
           +DR G +M+TF P+IGERKYDW+K+QKFALS TEVGSLIS+GSKDS EFFHDPSM SSNA
Sbjct: 90  IDRRGSLMMTFMPAIGERKYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNA 149

Query: 534 GQVRKSLSIRAHADGSGYFXXXXXXXXXXXXXDRFVVPVSTAEFAVMRTAFSFALPHIMG 713
           GQVRKSLSI+ HADGSGYF             D FVVPV+ AEFAVM+TAFSFALPHIMG
Sbjct: 150 GQVRKSLSIKPHADGSGYFISLSVNNGILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMG 209

Query: 714 WEQSIYKLPLRTNQSSPPPSAV----SNPQ-GSEWDR 809
           W     +L  + N  + PP  V    ++PQ   EWD+
Sbjct: 210 WN----RLTGQGNTEALPPRNVTHLKTDPQLELEWDK 242


>gb|AAG51881.1|AC016162_2 unknown protein; 79476-81015 [Arabidopsis thaliana]
          Length = 237

 Score =  231 bits (588), Expect = 2e-58
 Identities = 128/235 (54%), Positives = 162/235 (68%), Gaps = 12/235 (5%)
 Frame = +3

Query: 141 LGKGMANEATNDFKL--LRGITTHTGMSTATPKFEPGAGA-----KIFAPYSIYKGKAAL 299
           L + + +++ + F+   LRG  + +  ST    F PG  A     ++FAPYSI+KGKAAL
Sbjct: 8   LSRSLCDQSKSLFEASTLRGFASWSNSSTPGRGF-PGKDAAKPSGRLFAPYSIFKGKAAL 66

Query: 300 SAYPLLPTYNKLESGDYRVDRCGVIMLTFWPSIGERKYDWDKRQKFALSATEVGSLISLG 479
           S  P+LP++ +++SG+ R+DR G +M+TF P+IGERKYDW+K+QKFALS TEVGSLIS+G
Sbjct: 67  SVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKKQKFALSPTEVGSLISMG 126

Query: 480 SKDSCEFFHDPSMLSSNAGQVRKSLSIRAHADGSGYFXXXXXXXXXXXXXDRFVVPVSTA 659
           SKDS EFFHDPSM SSNAGQVRKSLS++ HADGSGYF             D FVVPV+ A
Sbjct: 127 SKDSSEFFHDPSMKSSNAGQVRKSLSVKPHADGSGYFISLSVNNSILKTNDYFVVPVTKA 186

Query: 660 EFAVMRTAFSFALPHIMGWEQSIYKLPLRTNQSSPPPSAVSN----PQ-GSEWDR 809
           EFAVM+TAFSFALPHIMGW     +L    N  + P   VS+    PQ   EWD+
Sbjct: 187 EFAVMKTAFSFALPHIMGWN----RLTGHVNTEALPSRNVSHLKTEPQLELEWDK 237