BLASTX nr result
ID: Scutellaria22_contig00001927
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Scutellaria22_contig00001927
(584 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, c... 192 5e-63
sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, c... 187 6e-60
ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 186 2e-58
emb|CBI34828.3| unnamed protein product [Vitis vinifera] 186 2e-58
ref|XP_002318093.1| predicted protein [Populus trichocarpa] gi|2... 177 3e-58
>sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor gi|19741|emb|CAA40364.1| 31kD chloroplast
ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product
[Nicotiana sylvestris]
Length = 315
Score = 192 bits (489), Expect(2) = 5e-63
Identities = 96/120 (80%), Positives = 105/120 (87%), Gaps = 3/120 (2%)
Frame = +3
Query: 234 VEEARVVYNRDTDRSKGFGFVTMSTVEEADKAVRMFNRYDFNGRLLTVNIAAQKGTRP-- 407
VE A V+YNRDTD+S+GFGFVTMSTVEEA+KAV M+NRYD NGRLLTVN AA++G RP
Sbjct: 162 VEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPER 221
Query: 408 -PRVFEPSYRIYVGNLPWSADDARLEQLFSEHGKVVSARVVSDRDTGRSRGFGFVVMASE 584
PR FE SYRIYVGN+PW DDARLEQLFSEHGKVVSARVV DR+TGRSRGFGFV MASE
Sbjct: 222 PPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASE 281
Score = 74.3 bits (181), Expect(2) = 5e-63
Identities = 39/58 (67%), Positives = 44/58 (75%), Gaps = 9/58 (15%)
Frame = +2
Query: 5 VEAAGDAGESDG---------FVEPPEEAKLYVGNLPYDVDSEGLAYMFQEAGVVEEA 151
VEA GDAGESD F EPPE+AKL+VGNLPYDVDSEGLA +F++AGVVE A
Sbjct: 108 VEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIA 165
Score = 52.8 bits (125), Expect(2) = 1e-08
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +3
Query: 234 VEEARVVYNRDTDRSKGFGFVTMSTVEEADKAVRMFNRYDFNGRLLTVNIAAQKGTR 404
V ARVVY+R+T RS+GFGFVTM++ E A+ + +GR + VN+A + R
Sbjct: 256 VVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312
Score = 32.0 bits (71), Expect(2) = 1e-08
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 65 KLYVGNLPYDVDSEGLAYMFQEAGVVEEAR 154
++YVGN+P+ +D L +F E G V AR
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSAR 260
>sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor gi|100388|pir||S12109
ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product
[Nicotiana sylvestris]
Length = 276
Score = 187 bits (474), Expect(2) = 6e-60
Identities = 90/120 (75%), Positives = 106/120 (88%), Gaps = 3/120 (2%)
Frame = +3
Query: 234 VEEARVVYNRDTDRSKGFGFVTMSTVEEADKAVRMFNRYDFNGRLLTVNIAAQKGTRP-- 407
VE A V+YNR+TDRS+GFGFVTMSTVEEADKAV ++++YD NGRLLTVN AA +G+RP
Sbjct: 123 VEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPER 182
Query: 408 -PRVFEPSYRIYVGNLPWSADDARLEQLFSEHGKVVSARVVSDRDTGRSRGFGFVVMASE 584
PR F+P+YRIYVGN+PW DDARLEQ+FSEHGKVVSARVV DR++GRSRGFGFV M+SE
Sbjct: 183 APRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSE 242
Score = 69.7 bits (169), Expect(2) = 6e-60
Identities = 31/45 (68%), Positives = 40/45 (88%)
Frame = +2
Query: 17 GDAGESDGFVEPPEEAKLYVGNLPYDVDSEGLAYMFQEAGVVEEA 151
G+AGE++ + EP E+AKL+VGNLPYD+DSEGLA +FQ+AGVVE A
Sbjct: 82 GEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIA 126
Score = 49.7 bits (117), Expect(2) = 2e-08
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +3
Query: 234 VEEARVVYNRDTDRSKGFGFVTMSTVEEADKAVRMFNRYDFNGRLLTVNIAAQKGTR 404
V ARVV++R++ RS+GFGFVTMS+ E +A+ + +GR + VN A ++ R
Sbjct: 217 VVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRR 273
Score = 34.3 bits (77), Expect(2) = 2e-08
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 65 KLYVGNLPYDVDSEGLAYMFQEAGVVEEAR 154
++YVGN+P+D+D L +F E G V AR
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSAR 221
Score = 55.1 bits (131), Expect = 9e-06
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Frame = +3
Query: 420 EPSY--RIYVGNLPWSADDARLEQLFSEHGKVVSARVVSDRDTGRSRGFGFVVMAS 581
EPS +++VGNLP+ D L QLF + G V A V+ +R+T RSRGFGFV M++
Sbjct: 92 EPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMST 147
>ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 186 bits (473), Expect(2) = 2e-58
Identities = 91/120 (75%), Positives = 103/120 (85%), Gaps = 3/120 (2%)
Frame = +3
Query: 234 VEEARVVYNRDTDRSKGFGFVTMSTVEEADKAVRMFNRYDFNGRLLTVNIAAQKGTRP-- 407
VE A V+YNR+TD+S+GFGF+TMSTVEEA+KAV MFNRYD NGR LTVN AA +G+RP
Sbjct: 159 VEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEMFNRYDLNGRFLTVNKAAPRGSRPER 218
Query: 408 -PRVFEPSYRIYVGNLPWSADDARLEQLFSEHGKVVSARVVSDRDTGRSRGFGFVVMASE 584
P+ FEPS+RIYVGNLPW DDARLEQ+FSEHGKVV ARVV DRDT RSRGFGFV M+SE
Sbjct: 219 PPQAFEPSFRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSE 278
Score = 64.7 bits (156), Expect(2) = 2e-58
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +2
Query: 26 GESDGFVEPPEEAKLYVGNLPYDVDSEGLAYMFQEAGVVEEA 151
G D + EPPEEAKL+VGNLPYD+DSE LA +F EAGVVE A
Sbjct: 121 GSEDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIA 162
Score = 57.4 bits (137), Expect(2) = 1e-10
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = +3
Query: 234 VEEARVVYNRDTDRSKGFGFVTMSTVEEADKAVRMFNRYDFNGRLLTVNIAAQKGTR 404
V +ARVVY+RDT RS+GFGFVTMS+ E + A+ + +GR + VN+A ++ R
Sbjct: 253 VVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRR 309
Score = 33.9 bits (76), Expect(2) = 1e-10
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 65 KLYVGNLPYDVDSEGLAYMFQEAGVVEEAR 154
++YVGNLP+ VD L +F E G V +AR
Sbjct: 228 RIYVGNLPWQVDDARLEQVFSEHGKVVDAR 257
Score = 55.5 bits (132), Expect = 7e-06
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +3
Query: 432 RIYVGNLPWSADDARLEQLFSEHGKVVSARVVSDRDTGRSRGFGFVVMAS 581
+++VGNLP+ D +L QLF E G V A V+ +R+T +SRGFGF+ M++
Sbjct: 134 KLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMST 183
>emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 186 bits (473), Expect(2) = 2e-58
Identities = 91/120 (75%), Positives = 103/120 (85%), Gaps = 3/120 (2%)
Frame = +3
Query: 234 VEEARVVYNRDTDRSKGFGFVTMSTVEEADKAVRMFNRYDFNGRLLTVNIAAQKGTRP-- 407
VE A V+YNR+TD+S+GFGF+TMSTVEEA+KAV MFNRYD NGR LTVN AA +G+RP
Sbjct: 119 VEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEMFNRYDLNGRFLTVNKAAPRGSRPER 178
Query: 408 -PRVFEPSYRIYVGNLPWSADDARLEQLFSEHGKVVSARVVSDRDTGRSRGFGFVVMASE 584
P+ FEPS+RIYVGNLPW DDARLEQ+FSEHGKVV ARVV DRDT RSRGFGFV M+SE
Sbjct: 179 PPQAFEPSFRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSE 238
Score = 64.7 bits (156), Expect(2) = 2e-58
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +2
Query: 26 GESDGFVEPPEEAKLYVGNLPYDVDSEGLAYMFQEAGVVEEA 151
G D + EPPEEAKL+VGNLPYD+DSE LA +F EAGVVE A
Sbjct: 81 GSEDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIA 122
Score = 57.4 bits (137), Expect(2) = 1e-10
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = +3
Query: 234 VEEARVVYNRDTDRSKGFGFVTMSTVEEADKAVRMFNRYDFNGRLLTVNIAAQKGTR 404
V +ARVVY+RDT RS+GFGFVTMS+ E + A+ + +GR + VN+A ++ R
Sbjct: 213 VVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRR 269
Score = 33.9 bits (76), Expect(2) = 1e-10
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 65 KLYVGNLPYDVDSEGLAYMFQEAGVVEEAR 154
++YVGNLP+ VD L +F E G V +AR
Sbjct: 188 RIYVGNLPWQVDDARLEQVFSEHGKVVDAR 217
Score = 55.5 bits (132), Expect = 7e-06
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +3
Query: 432 RIYVGNLPWSADDARLEQLFSEHGKVVSARVVSDRDTGRSRGFGFVVMAS 581
+++VGNLP+ D +L QLF E G V A V+ +R+T +SRGFGF+ M++
Sbjct: 94 KLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMST 143
>ref|XP_002318093.1| predicted protein [Populus trichocarpa] gi|222858766|gb|EEE96313.1|
predicted protein [Populus trichocarpa]
Length = 327
Score = 177 bits (448), Expect(2) = 3e-58
Identities = 87/121 (71%), Positives = 100/121 (82%), Gaps = 3/121 (2%)
Frame = +3
Query: 231 TVEEARVVYNRDTDRSKGFGFVTMSTVEEADKAVRMFNRYDFNGRLLTVNIAAQKGTRP- 407
TVE A V+YNR+TD S+GFGFVTMSTVEE++KAV M +RYD +GR LTVN AA +G+RP
Sbjct: 174 TVEIAEVIYNRETDTSRGFGFVTMSTVEESEKAVEMLHRYDLDGRFLTVNKAAPRGSRPE 233
Query: 408 --PRVFEPSYRIYVGNLPWSADDARLEQLFSEHGKVVSARVVSDRDTGRSRGFGFVVMAS 581
PRV EP YRIYVGNLPW D RLEQ+FSEHGKVVSARVV DR+T RSRGFGFV M++
Sbjct: 234 RPPRVSEPGYRIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMST 293
Query: 582 E 584
E
Sbjct: 294 E 294
Score = 73.9 bits (180), Expect(2) = 3e-58
Identities = 32/50 (64%), Positives = 42/50 (84%)
Frame = +2
Query: 2 AVEAAGDAGESDGFVEPPEEAKLYVGNLPYDVDSEGLAYMFQEAGVVEEA 151
A+ G++G+ +GFVEPPEEAK++VGNLPYDVDSE LA +F++AG VE A
Sbjct: 129 AIRGEGESGDEEGFVEPPEEAKIFVGNLPYDVDSEKLAMLFEQAGTVEIA 178
Score = 56.6 bits (135), Expect(2) = 3e-11
Identities = 29/62 (46%), Positives = 42/62 (67%)
Frame = +3
Query: 234 VEEARVVYNRDTDRSKGFGFVTMSTVEEADKAVRMFNRYDFNGRLLTVNIAAQKGTRPPR 413
V ARVV++R+T+RS+GFGFVTMST E + A+ + + +GR + VN+A + RP R
Sbjct: 269 VVSARVVFDRETNRSRGFGFVTMSTESELNDAIAALDGQNLDGRPIRVNVAEE---RPRR 325
Query: 414 VF 419
F
Sbjct: 326 TF 327
Score = 36.6 bits (83), Expect(2) = 3e-11
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 65 KLYVGNLPYDVDSEGLAYMFQEAGVVEEAR 154
++YVGNLP+DVDS L +F E G V AR
Sbjct: 244 RIYVGNLPWDVDSGRLEQIFSEHGKVVSAR 273