BLASTX nr result

ID: Salvia21_contig00028895 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Salvia21_contig00028895
         (547 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265433.2| PREDICTED: uncharacterized protein LOC100262...    66   4e-09
ref|XP_004141981.1| PREDICTED: probable mediator of RNA polymera...    62   6e-08
gb|AEL99013.1| transcription elongation factor (TFIIS) family pr...    59   5e-07
gb|AEL99012.1| transcription elongation factor (TFIIS) family pr...    59   5e-07
ref|XP_002530078.1| conserved hypothetical protein [Ricinus comm...    59   6e-07

>ref|XP_002265433.2| PREDICTED: uncharacterized protein LOC100262291 [Vitis vinifera]
           gi|296081186|emb|CBI18212.3| unnamed protein product
           [Vitis vinifera]
          Length = 332

 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
 Frame = -3

Query: 542 LLDMNTTFTTLKETEIGKHVTKLRKHSSNEXXXXXXXXXXXXRDTVDEWVRQNTPIEEEA 363
           L DM+ TF  LKET+IG+HV +LRKH SNE            +D VDEWV+ +TP E  A
Sbjct: 130 LADMDITFKALKETDIGRHVNRLRKHPSNEVRRLVKQLVRKWKDLVDEWVKLSTPGETTA 189

Query: 362 TEF---NDQASYLFAKDDARIHNSVKDVSCHSTP 270
           +      D       K  + +H+ V D +    P
Sbjct: 190 SAIVADGDSPQQNHLKSTSNVHHQVPDFAYSPNP 223


>ref|XP_004141981.1| PREDICTED: probable mediator of RNA polymerase II transcription
           subunit 26c-like [Cucumis sativus]
           gi|449528150|ref|XP_004171069.1| PREDICTED: probable
           mediator of RNA polymerase II transcription subunit
           26c-like [Cucumis sativus]
          Length = 345

 Score = 62.0 bits (149), Expect = 6e-08
 Identities = 31/65 (47%), Positives = 39/65 (60%)
 Frame = -3

Query: 542 LLDMNTTFTTLKETEIGKHVTKLRKHSSNEXXXXXXXXXXXXRDTVDEWVRQNTPIEEEA 363
           L DM+ TF  LKET+IG+HV +LRKH SN+            ++ VDEWVR N P E+ A
Sbjct: 143 LADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTA 202

Query: 362 TEFND 348
           T   D
Sbjct: 203 TLLAD 207


>gb|AEL99013.1| transcription elongation factor (TFIIS) family protein, partial
           [Silene latifolia]
          Length = 278

 Score = 58.9 bits (141), Expect = 5e-07
 Identities = 28/54 (51%), Positives = 34/54 (62%)
 Frame = -3

Query: 542 LLDMNTTFTTLKETEIGKHVTKLRKHSSNEXXXXXXXXXXXXRDTVDEWVRQNT 381
           L DM+ TF  LKET+IG+HV +LRKH SN+            +D VDEWVR NT
Sbjct: 82  LADMDITFKALKETDIGRHVNRLRKHPSNDVRQLVKLLVRKWKDLVDEWVRANT 135


>gb|AEL99012.1| transcription elongation factor (TFIIS) family protein, partial
           [Silene latifolia]
          Length = 278

 Score = 58.9 bits (141), Expect = 5e-07
 Identities = 28/54 (51%), Positives = 34/54 (62%)
 Frame = -3

Query: 542 LLDMNTTFTTLKETEIGKHVTKLRKHSSNEXXXXXXXXXXXXRDTVDEWVRQNT 381
           L DM+ TF  LKET+IG+HV +LRKH SN+            +D VDEWVR NT
Sbjct: 82  LADMDITFKALKETDIGRHVNRLRKHPSNDVRQLVKLLVRKWKDLVDEWVRANT 135


>ref|XP_002530078.1| conserved hypothetical protein [Ricinus communis]
           gi|223530431|gb|EEF32318.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 362

 Score = 58.5 bits (140), Expect = 6e-07
 Identities = 32/91 (35%), Positives = 45/91 (49%)
 Frame = -3

Query: 542 LLDMNTTFTTLKETEIGKHVTKLRKHSSNEXXXXXXXXXXXXRDTVDEWVRQNTPIEEEA 363
           L DM+ TF  LKET+IG+HV +LRKH+SN+            +D VDEWV+ N P +  +
Sbjct: 156 LADMDITFKALKETDIGRHVNQLRKHTSNDVRRLVKQLVRKWKDIVDEWVKLNPPGQHAS 215

Query: 362 TEFNDQASYLFAKDDARIHNSVKDVSCHSTP 270
           +           K     H+ V D +    P
Sbjct: 216 SGLMADGDSPRQKFPQNGHHQVPDFAYSPNP 246


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