BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Salvia21_contig00028780
         (252 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ01915.1| DNA-directed RNA polymerase [Solanum tuberosum]       163   1e-38
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...   145   3e-33
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   145   3e-33
emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II larg...   145   4e-33
ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Ar...   145   4e-33

>emb|CAJ01915.1| DNA-directed RNA polymerase [Solanum tuberosum]
          Length = 361

 Score =  163 bits (413), Expect = 1e-38
 Identities = 74/83 (89%), Positives = 81/83 (97%)
 Frame = -3

Query: 250 EMLKQAMEIPLPSYMEGGLEFSMTPGRSPISGTPYHDGMMSPNYMLTPNIRLSPVSDAQF 71
           EMLKQA+EIPLPSYMEGGLEF MTPGRSPISGTPYHDGMMSPNY+L+PN+R+SP++DAQF
Sbjct: 47  EMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQF 106

Query: 70  SPYVGGMAFSPTLSPGYSPSSPG 2
           SPYVGGMAFSPT SPGYSPSSPG
Sbjct: 107 SPYVGGMAFSPTSSPGYSPSSPG 129


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score =  145 bits (366), Expect = 3e-33
 Identities = 67/83 (80%), Positives = 77/83 (92%)
 Frame = -3

Query: 250  EMLKQAMEIPLPSYMEGGLEFSMTPGRSPISGTPYHDGMMSPNYMLTPNIRLSPVSDAQF 71
            EMLK A+E+ LPSY++G L+F MTP RSPISGTPYH+GMMSPNY+L+PN+RLSP+SDAQF
Sbjct: 1468 EMLKNAIELQLPSYIDG-LDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQF 1526

Query: 70   SPYVGGMAFSPTLSPGYSPSSPG 2
            SPYVGGMAFSPT SPGYSPSSPG
Sbjct: 1527 SPYVGGMAFSPTSSPGYSPSSPG 1549


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score =  145 bits (366), Expect = 3e-33
 Identities = 67/83 (80%), Positives = 77/83 (92%)
 Frame = -3

Query: 250  EMLKQAMEIPLPSYMEGGLEFSMTPGRSPISGTPYHDGMMSPNYMLTPNIRLSPVSDAQF 71
            EMLK A+E+ LPSY++G L+F MTP RSPISGTPYH+GMMSPNY+L+PN+RLSP+SDAQF
Sbjct: 1468 EMLKNAIELQLPSYIDG-LDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQF 1526

Query: 70   SPYVGGMAFSPTLSPGYSPSSPG 2
            SPYVGGMAFSPT SPGYSPSSPG
Sbjct: 1527 SPYVGGMAFSPTSSPGYSPSSPG 1549


>emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
            [Arabidopsis thaliana] gi|7270532|emb|CAB81489.1|
            DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
            [Arabidopsis thaliana]
          Length = 1840

 Score =  145 bits (365), Expect = 4e-33
 Identities = 67/83 (80%), Positives = 77/83 (92%)
 Frame = -3

Query: 250  EMLKQAMEIPLPSYMEGGLEFSMTPGRSPISGTPYHDGMMSPNYMLTPNIRLSPVSDAQF 71
            EMLK A+E+ LPSYM+G LEF MTP RSP+SGTPYH+GMMSPNY+L+PN+RLSP+SDAQF
Sbjct: 1470 EMLKNAIELQLPSYMDG-LEFGMTPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQF 1528

Query: 70   SPYVGGMAFSPTLSPGYSPSSPG 2
            SPYVGGMAFSP+ SPGYSPSSPG
Sbjct: 1529 SPYVGGMAFSPSSSPGYSPSSPG 1551


>ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
            gi|322510106|sp|P18616.3|RPB1_ARATH RecName:
            Full=DNA-directed RNA polymerase II subunit RPB1;
            Short=RNA polymerase II subunit B1; AltName:
            Full=DNA-directed RNA polymerase III largest subunit
            gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase
            II subunit RPB1 [Arabidopsis thaliana]
          Length = 1839

 Score =  145 bits (365), Expect = 4e-33
 Identities = 67/83 (80%), Positives = 77/83 (92%)
 Frame = -3

Query: 250  EMLKQAMEIPLPSYMEGGLEFSMTPGRSPISGTPYHDGMMSPNYMLTPNIRLSPVSDAQF 71
            EMLK A+E+ LPSYM+G LEF MTP RSP+SGTPYH+GMMSPNY+L+PN+RLSP+SDAQF
Sbjct: 1469 EMLKNAIELQLPSYMDG-LEFGMTPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQF 1527

Query: 70   SPYVGGMAFSPTLSPGYSPSSPG 2
            SPYVGGMAFSP+ SPGYSPSSPG
Sbjct: 1528 SPYVGGMAFSPSSSPGYSPSSPG 1550