BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Salvia21_contig00002072
         (644 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymer...    47   7e-07
ref|NP_175827.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|4...    52   3e-06
ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrat...    52   3e-06
gb|ACF06506.1| RNA polymerase [Elaeis guineensis]                      52   3e-06
ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|2...    52   1e-05

>ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymerases I, II, and III
           subunit RPABC3-like [Cucumis sativus]
           gi|449509097|ref|XP_004163492.1| PREDICTED: probable
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC3-like [Cucumis sativus]
          Length = 146

 Score = 47.4 bits (111), Expect(2) = 7e-07
 Identities = 23/40 (57%), Positives = 29/40 (72%)
 Frame = +3

Query: 3   LADKFEYVMHGLLYKMAEAEGKTDGNDNVKVEVYISFGGL 122
           LADKFEY+MHG  YK+++    +D    +KVEVY SFGGL
Sbjct: 83  LADKFEYIMHGKTYKLSDEGSGSD----LKVEVYASFGGL 118



 Score = 31.6 bits (70), Expect(2) = 7e-07
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 185 LQLMLKGDPLKMHKFRVDQ 241
           LQ++LKGDP+   KFRVDQ
Sbjct: 118 LQMLLKGDPIHCAKFRVDQ 136


>ref|NP_175827.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
           gi|4585968|gb|AAD25604.1|AC005287_6 RNA polymerase I, II
           and III 16.5 kDa subunit [Arabidopsis thaliana]
           gi|3372230|gb|AAC28252.1| RNA polymerase I, II and III
           16.5 kDa subunit [Arabidopsis thaliana]
           gi|21555812|gb|AAM63939.1| RNA polymerase II subunit,
           putative [Arabidopsis thaliana]
           gi|28466897|gb|AAO44057.1| At1g54250 [Arabidopsis
           thaliana] gi|110735704|dbj|BAE99832.1| RNA polymerase I,
           II and III 16.5 kDa subunit [Arabidopsis thaliana]
           gi|332194950|gb|AEE33071.1| RNA polymerase Rpb8
           [Arabidopsis thaliana]
          Length = 146

 Score = 52.4 bits (124), Expect(2) = 3e-06
 Identities = 24/40 (60%), Positives = 31/40 (77%)
 Frame = +3

Query: 3   LADKFEYVMHGLLYKMAEAEGKTDGNDNVKVEVYISFGGL 122
           LADK+EY+MHG LYK++E +GKT      K E+Y+SFGGL
Sbjct: 85  LADKYEYIMHGKLYKISERDGKTP-----KAELYVSFGGL 119



 Score = 24.3 bits (51), Expect(2) = 3e-06
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 185 LQLMLKGDPLKMHKFRVDQK 244
           L ++LKGDP  +  F +DQ+
Sbjct: 119 LLMLLKGDPAHISHFELDQR 138


>ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrata]
           gi|297337642|gb|EFH68059.1| ATRPABC16.5 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 146

 Score = 52.4 bits (124), Expect(2) = 3e-06
 Identities = 24/40 (60%), Positives = 31/40 (77%)
 Frame = +3

Query: 3   LADKFEYVMHGLLYKMAEAEGKTDGNDNVKVEVYISFGGL 122
           LADK+EY+MHG LYK++E +GKT      K E+Y+SFGGL
Sbjct: 85  LADKYEYIMHGKLYKISERDGKTP-----KAELYVSFGGL 119



 Score = 24.3 bits (51), Expect(2) = 3e-06
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 185 LQLMLKGDPLKMHKFRVDQK 244
           L ++LKGDP  +  F +DQ+
Sbjct: 119 LLMLLKGDPAHISHFELDQR 138


>gb|ACF06506.1| RNA polymerase [Elaeis guineensis]
          Length = 145

 Score = 52.0 bits (123), Expect(2) = 3e-06
 Identities = 26/40 (65%), Positives = 29/40 (72%)
 Frame = +3

Query: 3   LADKFEYVMHGLLYKMAEAEGKTDGNDNVKVEVYISFGGL 122
           LADKFEYVMHG LYK++E         NVKVE+Y SFGGL
Sbjct: 83  LADKFEYVMHGKLYKISE----ESSGPNVKVEIYASFGGL 118



 Score = 24.6 bits (52), Expect(2) = 3e-06
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 185 LQLMLKGDPLKMHKFRVDQK 244
           L +MLKGDP     F +DQ+
Sbjct: 118 LLMMLKGDPSNATNFELDQR 137


>ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
           gi|297817262|ref|XP_002876514.1| hypothetical protein
           ARALYDRAFT_907465 [Arabidopsis lyrata subsp. lyrata]
           gi|6996296|emb|CAB75457.1| putative protein [Arabidopsis
           thaliana] gi|21554131|gb|AAM63211.1| RNA polymerase II
           subunit, putative [Arabidopsis thaliana]
           gi|26453032|dbj|BAC43592.1| unknown protein [Arabidopsis
           thaliana] gi|30793811|gb|AAP40358.1| unknown protein
           [Arabidopsis thaliana] gi|297322352|gb|EFH52773.1|
           hypothetical protein ARALYDRAFT_907465 [Arabidopsis
           lyrata subsp. lyrata] gi|332646423|gb|AEE79944.1| RNA
           polymerase Rpb8 [Arabidopsis thaliana]
          Length = 146

 Score = 52.4 bits (124), Expect(2) = 1e-05
 Identities = 24/40 (60%), Positives = 31/40 (77%)
 Frame = +3

Query: 3   LADKFEYVMHGLLYKMAEAEGKTDGNDNVKVEVYISFGGL 122
           LADK+EY+MHG LYK++E +GKT      K E+Y+SFGGL
Sbjct: 85  LADKYEYIMHGKLYKISERDGKTP-----KAELYVSFGGL 119



 Score = 22.7 bits (47), Expect(2) = 1e-05
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 185 LQLMLKGDPLKMHKFRVDQK 244
           L ++L+GDP  +  F +DQ+
Sbjct: 119 LLMLLQGDPAHISHFELDQR 138