BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00040531
         (281 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB75595.1| Retrovirus-related Pol polyprotein from transposo...    72   1e-10
emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]         60   4e-07

>gb|EXB75595.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
           notabilis]
          Length = 440

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 42/93 (45%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
 Frame = +2

Query: 2   ESNLIIESRDAEFFETKFNGDSTSDNAENVTR--MDPSTSSSNKRKADELS-EPRKSQRI 172
           +SN+I+ESRD EF E KF+ DS+ +   NV R  +D   +S+NKRK    S EPR+SQR 
Sbjct: 311 DSNVIMESRDVEFAENKFSLDSSIELESNVNRPYVDIPGTSTNKRKESMTSFEPRRSQRE 370

Query: 173 RIQQHFASDFSLPNDILFLVEGSRNELLTEMPI 271
           R ++  A DF     + FLVEG RN +  ++P+
Sbjct: 371 RKEKDLAPDFISSQALTFLVEGDRNGVFNKIPL 403


>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
          Length = 1358

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 32/91 (35%), Positives = 52/91 (57%)
 Frame = +2

Query: 2    ESNLIIESRDAEFFETKFNGDSTSDNAENVTRMDPSTSSSNKRKADELSEPRKSQRIRIQ 181
            ES +++ESRD EFFE KF+ D  + N    +    STS    + +  + EPRKS R+R +
Sbjct: 760  ESGIVVESRDVEFFENKFSRDDENSNGTTTS----STSEKRVQPSPIVEEPRKSTRVRKE 815

Query: 182  QHFASDFSLPNDILFLVEGSRNELLTEMPIA 274
            + +  DF       +LVEG++ +++ E+  A
Sbjct: 816  KSYGDDF-----FSYLVEGTQKKVMREVIFA 841