BLASTX nr result
ID: Rheum21_contig00040516
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00040516
(256 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris] 107 2e-21
gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo s... 103 2e-20
emb|CAN78262.1| hypothetical protein VITISV_006704 [Vitis vinifera] 100 2e-19
emb|CAN72171.1| hypothetical protein VITISV_036207 [Vitis vinifera] 97 2e-18
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi] 96 5e-18
emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera] 94 2e-17
emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus] 93 3e-17
emb|CAN82978.1| hypothetical protein VITISV_023328 [Vitis vinifera] 93 3e-17
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera] 91 2e-16
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] 91 2e-16
gb|ABI34306.1| Polyprotein, putative [Solanum demissum] 91 2e-16
emb|CAN74721.1| hypothetical protein VITISV_006958 [Vitis vinifera] 89 5e-16
gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subc... 89 8e-16
gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays] 89 8e-16
gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|16... 89 8e-16
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc... 88 1e-15
gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group] 88 1e-15
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group] 88 1e-15
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group] 88 1e-15
gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subc... 88 1e-15
>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1290
Score = 107 bits (266), Expect = 2e-21
Identities = 48/75 (64%), Positives = 66/75 (88%)
Frame = +1
Query: 31 ELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEMFMQHKAKVEN 210
++L LIH+DLAD K T+SRGGK+Y++TF+D FS+YT+VYL++ KDEAF+MF+ +KA+VEN
Sbjct: 489 KILGLIHTDLADLKQTMSRGGKNYFVTFIDDFSRYTKVYLIKHKDEAFDMFLTYKAEVEN 548
Query: 211 QQDRKIKRPRSDRVG 255
Q ++KIKR RSDR G
Sbjct: 549 QLNKKIKRIRSDRGG 563
>gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
Length = 1038
Score = 103 bits (258), Expect = 2e-20
Identities = 48/85 (56%), Positives = 69/85 (81%)
Frame = +1
Query: 1 PFSSPVNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEM 180
PF R +ELLELI+SDLADF++T SRGGK+YY++FVD +S++T++YL+++K+EA M
Sbjct: 512 PFKPVEYRTTELLELIYSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVSM 571
Query: 181 FMQHKAKVENQQDRKIKRPRSDRVG 255
F++ KA+ ENQ ++IKR RSDR G
Sbjct: 572 FVKFKAESENQLGKRIKRLRSDRGG 596
>emb|CAN78262.1| hypothetical protein VITISV_006704 [Vitis vinifera]
Length = 565
Score = 100 bits (249), Expect = 2e-19
Identities = 47/80 (58%), Positives = 66/80 (82%)
Frame = +1
Query: 16 VNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEMFMQHK 195
V R+ +LL LIHSDL D K+T++R GK +YITF+D +S+YTRVYLLR+KDEA + F+++K
Sbjct: 376 VERELDLLSLIHSDLGDLKNTMTRDGKRFYITFIDDYSRYTRVYLLRNKDEARDAFIKYK 435
Query: 196 AKVENQQDRKIKRPRSDRVG 255
+VENQ ++KI+R R+DR G
Sbjct: 436 NEVENQLNKKIERLRTDRGG 455
>emb|CAN72171.1| hypothetical protein VITISV_036207 [Vitis vinifera]
Length = 1096
Score = 97.1 bits (240), Expect = 2e-18
Identities = 45/78 (57%), Positives = 64/78 (82%)
Frame = +1
Query: 16 VNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEMFMQHK 195
V ++S LL LIHSDL D K+T++RGGK +YIT + +S+YTRVYLLR+KDEA ++F+++K
Sbjct: 439 VEKESNLLSLIHSDLGDLKNTMTRGGKRFYITSIADYSRYTRVYLLRNKDEARDVFIKYK 498
Query: 196 AKVENQQDRKIKRPRSDR 249
+VENQ +KIKR ++DR
Sbjct: 499 NEVENQLSKKIKRLKTDR 516
>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
Length = 701
Score = 95.9 bits (237), Expect = 5e-18
Identities = 47/80 (58%), Positives = 60/80 (75%)
Frame = +1
Query: 16 VNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEMFMQHK 195
+ R SE L+LIHSD+ DFKS +RGG Y+ITF+D +KY VYLL+SKDEA + F+ +K
Sbjct: 510 IQRNSEPLDLIHSDICDFKSIQTRGGNKYFITFIDDCTKYCYVYLLKSKDEALDKFILYK 569
Query: 196 AKVENQQDRKIKRPRSDRVG 255
+VENQ +RKIK RSDR G
Sbjct: 570 NEVENQLNRKIKELRSDRGG 589
>emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]
Length = 1316
Score = 93.6 bits (231), Expect = 2e-17
Identities = 48/85 (56%), Positives = 60/85 (70%)
Frame = +1
Query: 1 PFSSPVNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEM 180
PF S V R +E L+L HSD+ D K +RGGK Y+ITF+D ++Y VYLL+SKDEA EM
Sbjct: 646 PFHS-VERSTEPLDLFHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAIEM 704
Query: 181 FMQHKAKVENQQDRKIKRPRSDRVG 255
F +K +VENQ +KIK RSDR G
Sbjct: 705 FKHYKIEVENQLSKKIKAIRSDRGG 729
>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
Length = 1358
Score = 93.2 bits (230), Expect = 3e-17
Identities = 46/85 (54%), Positives = 60/85 (70%)
Frame = +1
Query: 1 PFSSPVNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEM 180
PF S R + LLELIHSD+ + ++RGGK Y+I+F D S+Y VYLL SKDEAFE
Sbjct: 538 PFPSVPKRNTSLLELIHSDICELNGVLTRGGKRYFISFCDDSSRYLYVYLLHSKDEAFEA 597
Query: 181 FMQHKAKVENQQDRKIKRPRSDRVG 255
F +KA+VE Q++++IK RSDR G
Sbjct: 598 FKIYKAEVEKQKEKRIKILRSDRGG 622
>emb|CAN82978.1| hypothetical protein VITISV_023328 [Vitis vinifera]
Length = 474
Score = 93.2 bits (230), Expect = 3e-17
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = +1
Query: 16 VNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEMFMQHK 195
V R +E L+LIHSD+ D K +RGGK Y+ITF+D ++Y VYLL+SKDEA EMF +K
Sbjct: 378 VERSTEPLDLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAIEMFKHYK 437
Query: 196 AKVENQQDRKIKRPRSDRVG 255
+VENQ +KIK RSDR G
Sbjct: 438 NEVENQLSKKIKAIRSDRGG 457
>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
Length = 1277
Score = 90.9 bits (224), Expect = 2e-16
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = +1
Query: 16 VNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEMFMQHK 195
V R +E L+LIHSD+ D K +RGG Y+ITFVD +KY VYLL+SKDEA E F+ +K
Sbjct: 521 VERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKSKDEAIEKFVLYK 580
Query: 196 AKVENQQDRKIKRPRSDRVG 255
+VENQ ++KIK RSDR G
Sbjct: 581 TEVENQLNKKIKVLRSDRGG 600
>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 90.9 bits (224), Expect = 2e-16
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = +1
Query: 16 VNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEMFMQHK 195
V R +E L+LIHSD+ D K +RGG Y+ITFVD +KY VYLL+SKDEA E F+ +K
Sbjct: 521 VERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKSKDEAIEKFVLYK 580
Query: 196 AKVENQQDRKIKRPRSDRVG 255
+VENQ ++KIK RSDR G
Sbjct: 581 TEVENQLNKKIKVLRSDRGG 600
>gb|ABI34306.1| Polyprotein, putative [Solanum demissum]
Length = 1691
Score = 90.9 bits (224), Expect = 2e-16
Identities = 42/78 (53%), Positives = 59/78 (75%)
Frame = +1
Query: 16 VNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEMFMQHK 195
V RK++LLEL+H+D+ + ++RGG Y+ITF+D FSK+T VYL+++K +AFE F +
Sbjct: 488 VERKTDLLELVHTDICELGGILTRGGNRYFITFIDDFSKFTYVYLMKNKSDAFENFKTYL 547
Query: 196 AKVENQQDRKIKRPRSDR 249
+VENQ RKIKR RSDR
Sbjct: 548 HEVENQFGRKIKRIRSDR 565
>emb|CAN74721.1| hypothetical protein VITISV_006958 [Vitis vinifera]
Length = 487
Score = 89.4 bits (220), Expect = 5e-16
Identities = 44/85 (51%), Positives = 59/85 (69%)
Frame = +1
Query: 1 PFSSPVNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEM 180
PF S + R SELLEL+HSDL D K T +RGG Y+ITF+D +S++ VYLL SKDE ++
Sbjct: 242 PFKS-IERSSELLELVHSDLCDLKMTPTRGGIKYFITFIDDYSRFCYVYLLHSKDETIDV 300
Query: 181 FMQHKAKVENQQDRKIKRPRSDRVG 255
F +K +VEN ++ +K R DR G
Sbjct: 301 FKTYKNEVENHENNTLKMLRFDRGG 325
>gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1151
Score = 88.6 bits (218), Expect = 8e-16
Identities = 42/85 (49%), Positives = 59/85 (69%)
Frame = +1
Query: 1 PFSSPVNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEM 180
P + R LLEL+HSDL + +++GGK Y++T +D +++ VYLL++KDEA +
Sbjct: 349 PHKAAEERNLALLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDY 408
Query: 181 FMQHKAKVENQQDRKIKRPRSDRVG 255
F +KA+VENQ DRKIKR RSDR G
Sbjct: 409 FKIYKAEVENQLDRKIKRLRSDRGG 433
>gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays]
Length = 1292
Score = 88.6 bits (218), Expect = 8e-16
Identities = 42/85 (49%), Positives = 59/85 (69%)
Frame = +1
Query: 1 PFSSPVNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEM 180
P + R LEL+HSDL + +++GGK Y++TF+D +++ VYLL++KDEAF
Sbjct: 492 PHKAAEARSLAPLELVHSDLCEMNGILTKGGKRYFLTFIDDSTRFCYVYLLKTKDEAFNY 551
Query: 181 FMQHKAKVENQQDRKIKRPRSDRVG 255
F +KA+VENQ +RKIKR RSDR G
Sbjct: 552 FKAYKAEVENQLERKIKRLRSDRGG 576
>gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|168251067|gb|ACA21850.1| Fourf
gag/pol protein [Zea mays]
Length = 1279
Score = 88.6 bits (218), Expect = 8e-16
Identities = 42/85 (49%), Positives = 59/85 (69%)
Frame = +1
Query: 1 PFSSPVNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEM 180
P + R LEL+HSDL + +++GGK Y++TF+D +++ VYLL++KDEAF
Sbjct: 452 PHKAAEARSLAPLELVHSDLCEMNGILTKGGKRYFLTFIDDSTRFCYVYLLKTKDEAFNY 511
Query: 181 FMQHKAKVENQQDRKIKRPRSDRVG 255
F +KA+VENQ +RKIKR RSDR G
Sbjct: 512 FKAYKAEVENQLERKIKRLRSDRGG 536
>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 88.2 bits (217), Expect = 1e-15
Identities = 42/85 (49%), Positives = 59/85 (69%)
Frame = +1
Query: 1 PFSSPVNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEM 180
P + R LEL+HSDL + +++GGK Y++TF+D +++ VYLL++KDEA +
Sbjct: 439 PHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDY 498
Query: 181 FMQHKAKVENQQDRKIKRPRSDRVG 255
F +KA+VENQ DRKIKR RSDR G
Sbjct: 499 FKIYKAEVENQLDRKIKRLRSDRGG 523
>gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1289
Score = 88.2 bits (217), Expect = 1e-15
Identities = 42/85 (49%), Positives = 59/85 (69%)
Frame = +1
Query: 1 PFSSPVNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEM 180
P + R LEL+HSDL + +++GGK Y++TF+D +++ VYLL++KDEA +
Sbjct: 478 PHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDY 537
Query: 181 FMQHKAKVENQQDRKIKRPRSDRVG 255
F +KA+VENQ DRKIKR RSDR G
Sbjct: 538 FKIYKAEVENQLDRKIKRLRSDRGG 562
>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 88.2 bits (217), Expect = 1e-15
Identities = 42/85 (49%), Positives = 59/85 (69%)
Frame = +1
Query: 1 PFSSPVNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEM 180
P + R LEL+HSDL + +++GGK Y++TF+D +++ VYLL++KDEA +
Sbjct: 478 PHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDY 537
Query: 181 FMQHKAKVENQQDRKIKRPRSDRVG 255
F +KA+VENQ DRKIKR RSDR G
Sbjct: 538 FKIYKAEVENQLDRKIKRLRSDRGG 562
>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
Length = 1320
Score = 88.2 bits (217), Expect = 1e-15
Identities = 42/85 (49%), Positives = 59/85 (69%)
Frame = +1
Query: 1 PFSSPVNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEM 180
P + R LEL+HSDL + +++GGK Y++TF+D +++ VYLL++KDEA +
Sbjct: 478 PHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDY 537
Query: 181 FMQHKAKVENQQDRKIKRPRSDRVG 255
F +KA+VENQ DRKIKR RSDR G
Sbjct: 538 FKIYKAEVENQLDRKIKRLRSDRGG 562
>gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1060
Score = 87.8 bits (216), Expect = 1e-15
Identities = 42/85 (49%), Positives = 59/85 (69%)
Frame = +1
Query: 1 PFSSPVNRKSELLELIHSDLADFKSTVSRGGKHYYITFVDVFSKYTRVYLLRSKDEAFEM 180
P + R LEL+HSDL + +++GGK Y++TF+D +++ VYLL++KDEA +
Sbjct: 346 PHKAVEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDY 405
Query: 181 FMQHKAKVENQQDRKIKRPRSDRVG 255
F +KA+VENQ DRKIKR RSDR G
Sbjct: 406 FKIYKAEVENQLDRKIKRLRSDRGG 430