BLASTX nr result
ID: Rheum21_contig00040416
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00040416
(333 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi... 76 4e-12
ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607... 76 5e-12
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana] 74 2e-11
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] 74 3e-11
gb|AAR00629.1| putative reverse transcriptase [Oryza sativa Japo... 70 2e-10
gb|AAL31059.1|AC090120_5 putative gag-pol precursor [Oryza sativ... 69 5e-10
gb|ABB47490.1| retrotransposon protein, putative, Ty3-gypsy subc... 69 8e-10
gb|AAK52121.1|AC079936_17 Putative retroelement [Oryza sativa Ja... 69 8e-10
gb|AAO62321.1| putative GAG-POL precursor [Oryza sativa Japonica... 68 1e-09
gb|ABF96190.1| retrotransposon protein, putative, Ty3-gypsy subc... 68 1e-09
gb|AAL75988.1|AF466204_3 putative GAG-POL precursor -orf2 protei... 67 2e-09
emb|CAE03595.1| OSJNBa0087O24.18 [Oryza sativa Japonica Group] 67 2e-09
ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614... 67 2e-09
gb|AAX96629.1| retrotransposon protein, putative, Ty3-gypsy sub-... 67 2e-09
gb|AAX95114.1| retrotransposon protein, putative, unclassified [... 67 2e-09
emb|CAE05919.1| OSJNBa0034E24.13 [Oryza sativa Japonica Group] 67 2e-09
ref|XP_002452438.1| hypothetical protein SORBIDRAFT_04g025810 [S... 67 2e-09
emb|CAH66586.1| OSIGBa0111E13.4 [Oryza sativa Indica Group] 67 2e-09
gb|ABA93256.2| retrotransposon protein, putative, Ty3-gypsy subc... 67 2e-09
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc... 67 3e-09
>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 76.3 bits (186), Expect = 4e-12
Identities = 42/92 (45%), Positives = 61/92 (66%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP EV +LT ALNRFI+RS+DK F+++LKG++ F DE+ + +LK YL
Sbjct: 688 SPKNFKEVQRLTGRIAALNRFISRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLT 747
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVRE 19
P+LF PE E+L LY++VS ++S V++RE
Sbjct: 748 SPPVLFKPELDEKLYLYVSVSNHAVSGVLIRE 779
>ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607673 [Citrus sinensis]
Length = 1866
Score = 75.9 bits (185), Expect = 5e-12
Identities = 40/97 (41%), Positives = 62/97 (63%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP V EV LT ALNRFI+R++DK FF+++K + E E + +LK+YL
Sbjct: 1083 SPRTVKEVQSLTGKLAALNRFISRATDKCHPFFQIIKKGKKMEWTPECEEAFGQLKEYLA 1142
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
+P+L P E ++L+LY+A+S+++ S V+VRE + Q
Sbjct: 1143 RAPLLSTPREGDQLLLYLAISKRATSSVLVREEEGKQ 1179
>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
Length = 1838
Score = 73.9 bits (180), Expect = 2e-11
Identities = 44/92 (47%), Positives = 57/92 (61%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP EV +LT ALNRFI+RS+DK F+ LLK F+ D++ + +LK YL
Sbjct: 1048 SPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLS 1107
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVRE 19
PIL PE E L LYIAVS+ ++S V+VRE
Sbjct: 1108 TPPILVKPEVGETLYLYIAVSDHAVSSVLVRE 1139
>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
Length = 1103
Score = 73.6 bits (179), Expect = 3e-11
Identities = 43/92 (46%), Positives = 60/92 (65%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP EV +LT ALNRFI+RS+DK F+++LKG++ F DE+ + +LK YL
Sbjct: 245 SPRNFKEVQRLTGRIAALNRFISRSTDKSLPFYQILKGNKGFLWDEKCEEAFGQLKAYLT 304
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVRE 19
PIL PE E+L LY++VS ++S V+VRE
Sbjct: 305 TPPILSKPEVDEKLYLYVSVSNHAVSGVLVRE 336
>gb|AAR00629.1| putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1445
Score = 70.5 bits (171), Expect = 2e-10
Identities = 41/97 (42%), Positives = 55/97 (56%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP + EV KLT +ALNRF+ R ++ FF LLK F +E + LK+YL
Sbjct: 895 SPTRLKEVQKLTGCVVALNRFVARMGERGQPFFALLKKQDKFVWTQEAEEAFIALKRYLS 954
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
PIL P+ EEL LYIA + S+S V+V E ++ Q
Sbjct: 955 NPPILVAPQPNEELFLYIAATPYSVSTVIVVEREKVQ 991
>gb|AAL31059.1|AC090120_5 putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31432773|gb|AAP54366.1| transposon protein, putative,
unclassified [Oryza sativa Japonica Group]
Length = 684
Score = 69.3 bits (168), Expect = 5e-10
Identities = 40/97 (41%), Positives = 55/97 (56%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP + EV KLTR AL+RF+ R ++ FF LLK F +E + LK+YL
Sbjct: 159 SPTRLKEVQKLTRCMTALSRFVTRMGERGQPFFALLKKQDKFVWTQEAEEAFIALKRYLS 218
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
P+L P+ EEL LYIA + S+S V+V E ++ Q
Sbjct: 219 NPPVLVAPQPNEELFLYIAATPYSVSTVIVVEREKLQ 255
>gb|ABB47490.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1783
Score = 68.6 bits (166), Expect = 8e-10
Identities = 40/97 (41%), Positives = 55/97 (56%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP + EV KLT AL+RF+ R ++ FF LLK F +E K LK+YL
Sbjct: 1249 SPTRLKEVQKLTGYMAALSRFVARIGEQGQPFFALLKKQDKFVWTQETKEAFITLKRYLS 1308
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
P+L P+ EEL LYIA + S+S+V+V E ++ Q
Sbjct: 1309 NPPVLVAPQPNEELFLYIAATPHSVSIVIVVEREKVQ 1345
>gb|AAK52121.1|AC079936_17 Putative retroelement [Oryza sativa Japonica Group]
Length = 2079
Score = 68.6 bits (166), Expect = 8e-10
Identities = 40/97 (41%), Positives = 55/97 (56%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP + EV KLT AL+RF+ R ++ FF LLK F +E K LK+YL
Sbjct: 1314 SPTRLKEVQKLTGYMAALSRFVARIGEQGQPFFALLKKQDKFVWTQETKEAFITLKRYLS 1373
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
P+L P+ EEL LYIA + S+S+V+V E ++ Q
Sbjct: 1374 NPPVLVAPQPNEELFLYIAATPHSVSIVIVVEREKVQ 1410
>gb|AAO62321.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1665
Score = 68.2 bits (165), Expect = 1e-09
Identities = 40/97 (41%), Positives = 55/97 (56%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP + EV KLT AL+RFI R ++ FF LLK F +E ++ LK+YL
Sbjct: 925 SPTRLKEVQKLTGCMAALSRFIARMGERGQLFFALLKKQDKFVWTQEAEKAFIALKRYLS 984
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
SP+L P+ EEL LYI + S+S V+V E ++ Q
Sbjct: 985 NSPVLVAPQTNEELFLYIVATPHSVSTVIVVEREKVQ 1021
>gb|ABF96190.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1602
Score = 68.2 bits (165), Expect = 1e-09
Identities = 40/97 (41%), Positives = 55/97 (56%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP + EV KLT AL+RFI R ++ FF LLK F +E ++ LK+YL
Sbjct: 862 SPTRLKEVQKLTGCMAALSRFIARMGERGQLFFALLKKQDKFVWTQEAEKAFIALKRYLS 921
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
SP+L P+ EEL LYI + S+S V+V E ++ Q
Sbjct: 922 NSPVLVAPQTNEELFLYIVATPHSVSTVIVVEREKVQ 958
>gb|AAL75988.1|AF466204_3 putative GAG-POL precursor -orf2 protein [Sorghum bicolor]
Length = 756
Score = 67.4 bits (163), Expect = 2e-09
Identities = 37/91 (40%), Positives = 53/91 (58%)
Frame = -1
Query: 291 PNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL*E 112
P V ++ KLT AL+RFI+R +K FFKLLK F EE T+LK +L
Sbjct: 104 PKNVKDIQKLTECMAALSRFISRLGEKCLPFFKLLKASEKFSWTEEADAAFTQLKTFLTS 163
Query: 111 SPILFIPEEWEELILYIAVSEKSMSVVVVRE 19
P+L P+ E+L+LYIA +++ +S +V E
Sbjct: 164 PPVLKAPQPNEDLLLYIAATDRVVSTAIVVE 194
>emb|CAE03595.1| OSJNBa0087O24.18 [Oryza sativa Japonica Group]
Length = 1512
Score = 67.4 bits (163), Expect = 2e-09
Identities = 40/97 (41%), Positives = 53/97 (54%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP + EV KLT ALNRF+ R ++ FF LLK F +E + LK+YL
Sbjct: 823 SPTRLKEVQKLTGCMAALNRFVVRMGERGQPFFALLKKQDKFVWTQEAEEAFIALKRYLS 882
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
P+L P+ EEL LYIA S+S V+V E ++ Q
Sbjct: 883 NPPVLVAPQRNEELFLYIAAMPYSVSTVIVVEREKVQ 919
>ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614166 [Citrus sinensis]
Length = 1089
Score = 67.0 bits (162), Expect = 2e-09
Identities = 35/86 (40%), Positives = 55/86 (63%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP V EV LT ALNRFI+R++DK FF+++K + E E + +LK+YL
Sbjct: 916 SPRTVKEVQSLTGKLAALNRFISRATDKCHPFFQVIKKGKKMEWTPECEGAFGQLKEYLA 975
Query: 114 ESPILFIPEEWEELILYIAVSEKSMS 37
+P+L P E ++L+LY+A+S+++ S
Sbjct: 976 RAPLLSTPREGDQLLLYLAISKQATS 1001
>gb|AAX96629.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
Length = 1647
Score = 67.0 bits (162), Expect = 2e-09
Identities = 40/97 (41%), Positives = 53/97 (54%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP + EV KLT ALNRFI R ++ FF LLK F +E + LK+YL
Sbjct: 742 SPTRLKEVQKLTGCMAALNRFIARMGERGQPFFALLKKQHKFVWTQEAEEAFIALKRYLS 801
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
P+L P+ EEL LYIA + S+ V+V E ++ Q
Sbjct: 802 NPPVLVAPQPNEELFLYIAATPYSVITVIVVEREKVQ 838
>gb|AAX95114.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|77548885|gb|ABA91682.1|
retrotransposon protein, putative, unclassified [Oryza
sativa Japonica Group]
Length = 330
Score = 67.0 bits (162), Expect = 2e-09
Identities = 39/97 (40%), Positives = 54/97 (55%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP + EV KLT AL+RF+ R ++ FF LLK F +E + LK+YL
Sbjct: 36 SPTRLKEVQKLTGCMAALSRFVARMGERGQPFFTLLKKQDKFVWTQEAEEAFVALKRYLS 95
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
P+L P+ EEL LYIA + S+S V+V E ++ Q
Sbjct: 96 NPPVLVAPQPNEELFLYIAATSYSVSTVIVVEREKVQ 132
>emb|CAE05919.1| OSJNBa0034E24.13 [Oryza sativa Japonica Group]
Length = 523
Score = 67.0 bits (162), Expect = 2e-09
Identities = 39/97 (40%), Positives = 54/97 (55%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP + EV KLTR AL+RF+ R ++ FF LLK +E + LK+YL
Sbjct: 174 SPTRLKEVQKLTRCMAALSRFVARMGERGQPFFALLKKQDKIVWTQEAEEAFVALKRYLT 233
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
P+L P+ EEL LYIA + S+S V+V E ++ Q
Sbjct: 234 NPPVLVAPQPNEELFLYIAATPYSISTVIVVEREKVQ 270
>ref|XP_002452438.1| hypothetical protein SORBIDRAFT_04g025810 [Sorghum bicolor]
gi|241932269|gb|EES05414.1| hypothetical protein
SORBIDRAFT_04g025810 [Sorghum bicolor]
Length = 537
Score = 67.0 bits (162), Expect = 2e-09
Identities = 37/91 (40%), Positives = 53/91 (58%)
Frame = -1
Query: 291 PNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL*E 112
P V ++ KLT AL+RFI+R +K FFKLLK F EE T+LK +L
Sbjct: 247 PKNVKDIQKLTGYMAALSRFISRLGEKGLPFFKLLKASEKFSWTEEADAAFTQLKTFLTS 306
Query: 111 SPILFIPEEWEELILYIAVSEKSMSVVVVRE 19
P+L P+ E+L+LYIA +++ +S +V E
Sbjct: 307 PPVLTAPQPNEDLLLYIAATDRVVSTAIVVE 337
>emb|CAH66586.1| OSIGBa0111E13.4 [Oryza sativa Indica Group]
Length = 523
Score = 67.0 bits (162), Expect = 2e-09
Identities = 39/97 (40%), Positives = 54/97 (55%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP + EV KLTR AL+RF+ R ++ FF LLK +E + LK+YL
Sbjct: 174 SPTRLKEVQKLTRCMAALSRFVARMGERGQPFFALLKKQDKIVWTQEAEEAFVALKRYLT 233
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
P+L P+ EEL LYIA + S+S V+V E ++ Q
Sbjct: 234 NPPVLVAPQPNEELFLYIAATPYSISTVIVVEREKVQ 270
>gb|ABA93256.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1371
Score = 67.0 bits (162), Expect = 2e-09
Identities = 40/97 (41%), Positives = 53/97 (54%)
Frame = -1
Query: 294 SPNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL* 115
SP + EV KLT ALNRFI R ++ FF LLK F +E + LK+YL
Sbjct: 742 SPTRLKEVQKLTGCMAALNRFIARMGERGQPFFALLKKQHKFVWTQEAEEAFIALKRYLS 801
Query: 114 ESPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
P+L P+ EEL LYIA + S+ V+V E ++ Q
Sbjct: 802 NPPVLVAPQPNEELFLYIAATPYSVITVIVVEREKVQ 838
>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1889
Score = 66.6 bits (161), Expect = 3e-09
Identities = 35/96 (36%), Positives = 58/96 (60%)
Frame = -1
Query: 291 PNCVNEV*KLTRMTIALNRFINRSSDKWSAFFKLLKGDRLFE*DEEYKRYLTELKKYL*E 112
P EV +LT +L+RF+++S++K FFK L+G FE E ++ +LKKYL E
Sbjct: 1194 PRNTREVQRLTGRMASLSRFLSKSAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHE 1253
Query: 111 SPILFIPEEWEELILYIAVSEKSMSVVVVREVQRTQ 4
P L P + + L++Y+A + ++S V+V+E + Q
Sbjct: 1254 MPTLASPPKGQPLLMYVAATPATVSAVLVQEEENRQ 1289