BLASTX nr result
ID: Rheum21_contig00040375
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00040375
(373 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 66 1e-11
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 68 1e-10
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 68 1e-10
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 69 5e-10
gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana] 61 6e-10
ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein A... 62 8e-10
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali... 63 9e-10
gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana] 63 9e-10
gb|AAF69156.1|AC007915_8 F27F5.12 [Arabidopsis thaliana] 67 2e-09
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali... 66 4e-09
gb|ABK28199.1| unknown [Arabidopsis thaliana] 66 5e-09
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 66 5e-09
ref|XP_006468253.1| PREDICTED: uncharacterized protein LOC102614... 59 7e-09
gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana] 64 2e-08
gb|AAG12669.1|AC027033_4 hypothetical protein; 81517-79153 [Arab... 61 3e-08
gb|ABK28138.1| unknown [Arabidopsis thaliana] 60 3e-08
gb|ABE65396.1| hypothetical protein At1g26950 [Arabidopsis thali... 60 3e-08
gb|AAD14501.1| Hypothetical protein [Arabidopsis thaliana] 60 3e-08
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 63 5e-08
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 60 2e-07
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 66.2 bits (160), Expect(2) = 1e-11
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
GF +IG C+ P+ ELWG+ GL + W +G +RV LE DS++V+ L+ + HP S+L
Sbjct: 192 GFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFL 251
Query: 186 VMQG*DFLRR---VQFRHI 139
+ DFL + V+ H+
Sbjct: 252 LRLCYDFLSKGWIVRISHV 270
Score = 28.5 bits (62), Expect(2) = 1e-11
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -1
Query: 133 EANTRAGYLASLAFSFVLGCHILGDLSDCALPFLCADI 20
EAN A LA+ AFS LG H+L D L D+
Sbjct: 273 EANRLADGLANYAFSLSLGLHLLESRPDVVSSILLDDV 310
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 67.8 bits (164), Expect(2) = 1e-10
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = -2
Query: 372 LTGFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFS 193
L GF +IG C P+ ELWG GL + W++G++RV L+ D +LV+ LS V HP S
Sbjct: 1100 LGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLS 1159
Query: 192 YLV 184
+LV
Sbjct: 1160 FLV 1162
Score = 23.9 bits (50), Expect(2) = 1e-10
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 133 EANTRAGYLASLAFSFVLGCHILGDLSDCALPFLCADI 20
EAN A LA+ AF+ LG H + L AD+
Sbjct: 1183 EANRLADGLANYAFTLPLGLHCFDACPEGVRLLLLADV 1220
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 68.2 bits (165), Expect(2) = 1e-10
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = -2
Query: 372 LTGFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFS 193
L GF +IG C P+ ELWG GL + W++G++RV L DS LV+ LS + + HP S
Sbjct: 839 LGGFALNIGSCDAPLAELWGAYYGLLIAWDKGFRRVELNLDSELVVGFLSTGISKAHPLS 898
Query: 192 YLV 184
+LV
Sbjct: 899 FLV 901
Score = 23.1 bits (48), Expect(2) = 1e-10
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -1
Query: 133 EANTRAGYLASLAFSFVLGCHILGDLSDCALPFLCAD 23
EAN A LA+ AF LG H + L FL D
Sbjct: 922 EANRLADGLANYAFFLPLGFHCFEICPEDVLLFLVED 958
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 69.3 bits (168), Expect = 5e-10
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = -2
Query: 372 LTGFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFS 193
L GF +IG C+ P+ ELWG+ GL + WE+G++RV LE DS LV+ L + HP +
Sbjct: 545 LVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLA 604
Query: 192 YLV 184
+LV
Sbjct: 605 FLV 607
>gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana]
Length = 803
Score = 61.2 bits (147), Expect(2) = 6e-10
Identities = 27/61 (44%), Positives = 35/61 (57%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
GF +IG C+ P+ ELWG+ G L W + RV LE DS LV+ L + HP S+L
Sbjct: 674 GFALNIGRCSAPLAELWGVYYGFYLAWTKALTRVELEVDSELVVGFLKTGIGDQHPLSFL 733
Query: 186 V 184
V
Sbjct: 734 V 734
Score = 27.7 bits (60), Expect(2) = 6e-10
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -1
Query: 208 LSPLFLSCHAGIRFSS*GPVPSYHIEANTRAGYLASLAFSFVLGCHILGDLSDCALPFLC 29
LS L CH + + + EAN A LA+ AFS LG H L D+ D
Sbjct: 730 LSFLVRLCHGLLSKDWIVRITHVYREANRLADGLANYAFSLPLGFHSLIDVPD------- 782
Query: 28 ADIRIVLRQ 2
D+ ++L +
Sbjct: 783 -DLEVILHE 790
>ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 569
Score = 62.4 bits (150), Expect(2) = 8e-10
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Frame = -2
Query: 372 LTGFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFS 193
L+GF IG C++ + ELWG+ QGL+L W G +++ +E DS V+QL++KP + ++
Sbjct: 373 LSGFGMMIGSCSITVAELWGLYQGLQLAWNSGIRKLQVEIDSLCVLQLVTKPSLEINHYA 432
Query: 192 YLVMQG*DFLR---RVQFRHI 139
L+ D+L+ +V HI
Sbjct: 433 PLIQAIKDYLKMDWQVSISHI 453
Score = 26.2 bits (56), Expect(2) = 8e-10
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 133 EANTRAGYLASLAFSFVLGCHI 68
EAN A Y+A+LAFS LG I
Sbjct: 456 EANFAADYMANLAFSIPLGLAI 477
>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
gi|55978717|gb|AAV68820.1| hypothetical protein
AT1G17390 [Arabidopsis thaliana]
Length = 272
Score = 63.2 bits (152), Expect(2) = 9e-10
Identities = 26/61 (42%), Positives = 38/61 (62%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
GF +IG C+ P+ ELWG GL + WE+G ++ +E DS +V+ L +D HP S+L
Sbjct: 143 GFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFL 202
Query: 186 V 184
V
Sbjct: 203 V 203
Score = 25.4 bits (54), Expect(2) = 9e-10
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -1
Query: 208 LSPLFLSCHAGIRFSS*GPVPSYHIEANTRAGYLASLAFSFVLGCHILGDLSDCALPFLC 29
LS L CH + + + EAN A LA+ AF LG H+ D + +
Sbjct: 199 LSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDIVMSIVH 258
Query: 28 ADI 20
D+
Sbjct: 259 DDV 261
>gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
Length = 253
Score = 63.2 bits (152), Expect(2) = 9e-10
Identities = 26/61 (42%), Positives = 38/61 (62%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
GF +IG C+ P+ ELWG GL + WE+G ++ +E DS +V+ L +D HP S+L
Sbjct: 124 GFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFL 183
Query: 186 V 184
V
Sbjct: 184 V 184
Score = 25.4 bits (54), Expect(2) = 9e-10
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -1
Query: 208 LSPLFLSCHAGIRFSS*GPVPSYHIEANTRAGYLASLAFSFVLGCHILGDLSDCALPFLC 29
LS L CH + + + EAN A LA+ AF LG H+ D + +
Sbjct: 180 LSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDIVMSIVH 239
Query: 28 ADI 20
D+
Sbjct: 240 DDV 242
>gb|AAF69156.1|AC007915_8 F27F5.12 [Arabidopsis thaliana]
Length = 205
Score = 67.4 bits (163), Expect = 2e-09
Identities = 28/62 (45%), Positives = 41/62 (66%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
GF +IG C+ P+ ELWG+ GL LTWE+ R+ +E DS LV+ LSK + HP S++
Sbjct: 89 GFALNIGVCSAPLAELWGVYYGLYLTWERHITRLEVEVDSELVVGFLSKGISDSHPLSFV 148
Query: 186 VM 181
++
Sbjct: 149 IV 150
>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
Length = 314
Score = 66.2 bits (160), Expect = 4e-09
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
GF +IG C+ P+ ELWG+ GL + WE+ R+ +E DS +V+ L ++ HP S+L
Sbjct: 185 GFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIXINEVHPLSFL 244
Query: 186 VMQG*DFLR---RVQFRHI 139
V DF+ RV+ H+
Sbjct: 245 VRLCHDFISRDWRVRISHV 263
>gb|ABK28199.1| unknown [Arabidopsis thaliana]
Length = 315
Score = 65.9 bits (159), Expect = 5e-09
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
GF +IG C+ P+ ELWG+ GL + WE+ R+ +E DS +V+ L ++ HP S+L
Sbjct: 185 GFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFL 244
Query: 186 VMQG*DFLR---RVQFRHI 139
V DF+ RV+ H+
Sbjct: 245 VRLCHDFISRDWRVRISHV 263
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 314
Score = 65.9 bits (159), Expect = 5e-09
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
GF +IG C+ P+ ELWG+ GL + WE+ R+ +E DS +V+ L ++ HP S+L
Sbjct: 185 GFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFL 244
Query: 186 VMQG*DFLR---RVQFRHI 139
V DF+ RV+ H+
Sbjct: 245 VRLCHDFISRDWRVRISHV 263
>ref|XP_006468253.1| PREDICTED: uncharacterized protein LOC102614777 [Citrus sinensis]
Length = 320
Score = 58.9 bits (141), Expect(2) = 7e-09
Identities = 26/70 (37%), Positives = 42/70 (60%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
G+ ++G C+V ELWG+ GL + W+ G++RVY+E DS V++L+S P + L
Sbjct: 191 GYSANLGVCSVTSTELWGLFHGLSIAWQYGFRRVYVEVDSMCVMRLISNPNPPINEHFTL 250
Query: 186 VMQG*DFLRR 157
+ + LRR
Sbjct: 251 IQEIQALLRR 260
Score = 26.6 bits (57), Expect(2) = 7e-09
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 133 EANTRAGYLASLAFSFVLGCH 71
EAN A +LAS FSF LG H
Sbjct: 272 EANEVADFLASYNFSFSLGLH 292
>gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]
Length = 233
Score = 63.9 bits (154), Expect = 2e-08
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
GF +IG C P+ ELWG+ GL + W++G R+ LE DS +V+ L + HP S+L
Sbjct: 104 GFALNIGRCLAPLAELWGVYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFL 163
Query: 186 VMQG*DFLRR 157
V FL R
Sbjct: 164 VRMCHGFLSR 173
>gb|AAG12669.1|AC027033_4 hypothetical protein; 81517-79153 [Arabidopsis thaliana]
Length = 256
Score = 60.8 bits (146), Expect(2) = 3e-08
Identities = 27/60 (45%), Positives = 35/60 (58%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
GF SIG C+ P ELWG+ GL + WE+ RV LE DS +V+ L + HP S+L
Sbjct: 46 GFSVSIGICSAPQAELWGVYYGLYIAWEKWVTRVELEVDSEIVVGFLKTGIGDSHPLSFL 105
Score = 22.3 bits (46), Expect(2) = 3e-08
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 133 EANTRAGYLASLAFSFVLGCHILGDLSD 50
EAN A LA+ AF+ LG H D
Sbjct: 127 EANRLADGLANYAFTLPLGFHFFHSSPD 154
>gb|ABK28138.1| unknown [Arabidopsis thaliana]
Length = 163
Score = 60.5 bits (145), Expect(2) = 3e-08
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = -2
Query: 363 FVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYLV 184
F ++G CT P+ ELWG+ GL + WE+G R+ LE DS+LV L+ ++ H S+LV
Sbjct: 34 FALNLGRCTAPLAELWGVYYGLVIAWEKGITRLELEVDSKLVAGFLTTGIEDSHLLSFLV 93
Score = 22.7 bits (47), Expect(2) = 3e-08
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 133 EANTRAGYLASLAFSFVLGCHILGDLSDCALPFLCADIR 17
EAN A LA+ AFS +LG D LPF+ + +R
Sbjct: 114 EANRFADELANYAFSLLLGFLSF----DSGLPFVDSIMR 148
>gb|ABE65396.1| hypothetical protein At1g26950 [Arabidopsis thaliana]
Length = 162
Score = 60.5 bits (145), Expect(2) = 3e-08
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = -2
Query: 363 FVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYLV 184
F ++G CT P+ ELWG+ GL + WE+G R+ LE DS+LV L+ ++ H S+LV
Sbjct: 34 FALNLGRCTAPLAELWGVYYGLVIAWEKGITRLELEVDSKLVAGFLTTGIEDSHLLSFLV 93
Score = 22.7 bits (47), Expect(2) = 3e-08
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 133 EANTRAGYLASLAFSFVLGCHILGDLSDCALPFLCADIR 17
EAN A LA+ AFS +LG D LPF+ + +R
Sbjct: 114 EANRFADELANYAFSLLLGFLSF----DSGLPFVDSIMR 148
>gb|AAD14501.1| Hypothetical protein [Arabidopsis thaliana]
Length = 158
Score = 60.5 bits (145), Expect(2) = 3e-08
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = -2
Query: 363 FVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYLV 184
F ++G CT P+ ELWG+ GL + WE+G R+ LE DS+LV L+ ++ H S+LV
Sbjct: 30 FALNLGRCTAPLAELWGVYYGLVIAWEKGITRLELEVDSKLVAGFLTTGIEDSHLLSFLV 89
Score = 22.7 bits (47), Expect(2) = 3e-08
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 133 EANTRAGYLASLAFSFVLGCHILGDLSDCALPFLCADIR 17
EAN A LA+ AFS +LG D LPF+ + +R
Sbjct: 110 EANRFADELANYAFSLLLGFLSF----DSGLPFVDSIMR 144
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
Length = 947
Score = 62.8 bits (151), Expect = 5e-08
Identities = 27/61 (44%), Positives = 37/61 (60%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
GF IG C+ P+ ELWG+ GL + WE+ + RV LE DS LV+ L+ + H S+L
Sbjct: 880 GFALDIGVCSAPLAELWGVYYGLYMAWERRFTRVELEVDSELVVGFLTTGISDTHSLSFL 939
Query: 186 V 184
V
Sbjct: 940 V 940
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 60.5 bits (145), Expect = 2e-07
Identities = 28/70 (40%), Positives = 39/70 (55%)
Frame = -2
Query: 366 GFVFSIGCCTVPMEELWGIIQGLKLTWEQGYKRVYLETDSRLVIQLLSKPVDRYHPFSYL 187
GF +IG C+ P ELWG+ GL WE+ RV LE DS +++ L + HP S+L
Sbjct: 600 GFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFL 659
Query: 186 VMQG*DFLRR 157
V FL++
Sbjct: 660 VRLCHGFLQK 669