BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00039833
         (257 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG65975.1| retrotransposon protein, putative, Ty3-gypsy subc...    57   2e-06
gb|AAV24920.1| putative polyprotein [Oryza sativa Japonica Group...    57   2e-06
gb|AAO73254.1| putative GAG-POL precursor [Oryza sativa Japonica...    56   6e-06
gb|AAO23086.1| putative gag-pol precursor [Oryza sativa Japonica...    55   9e-06
gb|AAQ56482.1| putative gag-pol protein [Oryza sativa Japonica G...    55   9e-06

>gb|ABG65975.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1565

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 26/77 (33%), Positives = 42/77 (54%)
 Frame = +1

Query: 4   IAAKWFHTLKSDSIYSWDQLAKKFVSHFIANSREAPSVDSLYALRMRRDEGLRQFAIRFM 183
           IA  W+  L ++SIYSW+QL   FV +F   + E  +   L  +R R+ E +R++  RF+
Sbjct: 211 IARSWYFNLPANSIYSWEQLHDVFVLNFRGTNEEPKTQQHLLGIRQRQGESIREYMRRFL 270

Query: 184 ECYSDIDDCDEKSAVGA 234
           +    + D  E S + A
Sbjct: 271 QARCQVQDITEASVINA 287


>gb|AAV24920.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|55733857|gb|AAV59364.1| unknown protein [Oryza sativa
           Japonica Group]
          Length = 1279

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/77 (33%), Positives = 41/77 (53%)
 Frame = +1

Query: 4   IAAKWFHTLKSDSIYSWDQLAKKFVSHFIANSREAPSVDSLYALRMRRDEGLRQFAIRFM 183
           IA  W+  L ++SIYSW+QL   FV +F     E  +   L  +R R+ E +R++  RF 
Sbjct: 376 IARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRQGESIREYMRRFS 435

Query: 184 ECYSDIDDCDEKSAVGA 234
           + +  + D  E S + A
Sbjct: 436 QAWCQVQDITEASVINA 452


>gb|AAO73254.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
           gi|108709218|gb|ABF97013.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 908

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 26/77 (33%), Positives = 40/77 (51%)
 Frame = +1

Query: 4   IAAKWFHTLKSDSIYSWDQLAKKFVSHFIANSREAPSVDSLYALRMRRDEGLRQFAIRFM 183
           IA  W+  L ++SIYSW+QL   FV +F     E  +   L  +R R  E +R++  RF 
Sbjct: 417 IARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 476

Query: 184 ECYSDIDDCDEKSAVGA 234
           + +  + D  E S + A
Sbjct: 477 QAWCQVQDITEASVINA 493


>gb|AAO23086.1| putative gag-pol precursor [Oryza sativa Japonica Group]
          Length = 971

 Score = 55.1 bits (131), Expect = 9e-06
 Identities = 26/77 (33%), Positives = 40/77 (51%)
 Frame = +1

Query: 4   IAAKWFHTLKSDSIYSWDQLAKKFVSHFIANSREAPSVDSLYALRMRRDEGLRQFAIRFM 183
           IA  W+  L ++SIYSW+QL   FV +F     E  +   L  +R R  E +R++  RF 
Sbjct: 417 IARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 476

Query: 184 ECYSDIDDCDEKSAVGA 234
           +    ++D  E S + A
Sbjct: 477 QARCQVEDITEASVINA 493


>gb|AAQ56482.1| putative gag-pol protein [Oryza sativa Japonica Group]
          Length = 317

 Score = 55.1 bits (131), Expect = 9e-06
 Identities = 26/77 (33%), Positives = 40/77 (51%)
 Frame = +1

Query: 4   IAAKWFHTLKSDSIYSWDQLAKKFVSHFIANSREAPSVDSLYALRMRRDEGLRQFAIRFM 183
           IA  W+  L ++SIYSW+QL   FV +F     E  +   L  +R R  E +R++  RF+
Sbjct: 159 IARSWYLNLAANSIYSWEQLRDVFVLNFRVTYEEPKTQQHLLGIRQRSGESIREYMRRFL 218

Query: 184 ECYSDIDDCDEKSAVGA 234
           +    + D  E S + A
Sbjct: 219 QARCQVQDITEASVINA 235