BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00039715
         (274 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX96236.1| retrotransposon protein, putative, Ty1-copia sub-...   125   8e-27
gb|ABM55238.1| integrase [Beta vulgaris]                              124   1e-26
gb|ABH08430.1| putative integrase [Beta vulgaris]                     124   1e-26
gb|AAD20307.1| copia-type pol polyprotein [Zea mays]                  124   1e-26
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]         124   1e-26
gb|AAL76004.1|AF466646_12 putative gag-pol polyprotein [Zea mays]     124   1e-26
gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays]             124   1e-26
gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Ze...   124   1e-26
gb|ABF67921.1| Ji1 putative pol protein [Zea mays]                    124   1e-26
gb|AAN40035.1| putative gag-pol polyprotein [Zea mays]                124   1e-26
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]                124   1e-26
gb|AAX96493.1| retrotransposon protein, putative, unclassified [...   123   2e-26
emb|CCI55376.1| PH01B035L11.21 [Phyllostachys edulis]                 123   3e-26
gb|ABA98847.1| retrotransposon protein, putative, unclassified [...   123   3e-26
gb|AAP53706.1| retrotransposon protein, putative, unclassified [...   123   3e-26
gb|ABA96551.1| retrotransposon protein, putative, Ty1-copia subc...   122   4e-26
emb|CAD39835.2| OSJNBb0072N21.1 [Oryza sativa Japonica Group]         122   5e-26
gb|ABA98045.1| retrotransposon protein, putative, unclassified [...   122   6e-26
emb|CAE04585.2| OSJNBb0006N15.2 [Oryza sativa Japonica Group]         121   8e-26
gb|ABA98369.1| retrotransposon protein, putative, Ty1-copia subc...   121   1e-25

>gb|AAX96236.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549895|gb|ABA92692.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1500

 Score =  125 bits (313), Expect = 8e-27
 Identities = 62/91 (68%), Positives = 72/91 (79%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            AR+EAIRLL A+++  GFKL QMGVK+AFLNG I+EEVYV Q PGF+N    +HV+   K
Sbjct: 1076 ARIEAIRLLFAFAASKGFKLYQMGVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSK 1135

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPRAWYDRL  FLLA G+  GKVD
Sbjct: 1136 ALYGLKQAPRAWYDRLKNFLLAKGFTMGKVD 1166


>gb|ABM55238.1| integrase [Beta vulgaris]
          Length = 1516

 Score =  124 bits (312), Expect = 1e-26
 Identities = 60/91 (65%), Positives = 75/91 (82%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            ARLEAIR+LIA++++ GFKL QM VK AFLNG + E+VYV+Q PGF+N +  +HVY  DK
Sbjct: 1095 ARLEAIRILIAFAAYMGFKLYQMDVKCAFLNGYLNEDVYVEQPPGFENNNLPNHVYKLDK 1154

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPR+WY+RLS FLL + + RGKVD
Sbjct: 1155 ALYGLKQAPRSWYERLSKFLLENNFKRGKVD 1185


>gb|ABH08430.1| putative integrase [Beta vulgaris]
          Length = 1516

 Score =  124 bits (312), Expect = 1e-26
 Identities = 60/91 (65%), Positives = 75/91 (82%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            ARLEAIR+LIA++++ GFKL QM VK AFLNG + E+VYV+Q PGF+N +  +HVY  DK
Sbjct: 1095 ARLEAIRILIAFAAYMGFKLYQMDVKCAFLNGYLNEDVYVEQPPGFENNNLPNHVYKLDK 1154

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPR+WY+RLS FLL + + RGKVD
Sbjct: 1155 ALYGLKQAPRSWYERLSKFLLENNFKRGKVD 1185


>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
          Length = 1063

 Score =  124 bits (311), Expect = 1e-26
 Identities = 59/91 (64%), Positives = 75/91 (82%)
 Frame = -2

Query: 273 ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
           ARLE+IR+L+AY+++HGFKL QM VK+AFLNG IKEEVYV+Q PGF+++   +HVY   K
Sbjct: 638 ARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSK 697

Query: 93  ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
           ALYGLKQAPRAWY+ L  FL+A+G+  GK D
Sbjct: 698 ALYGLKQAPRAWYECLRDFLIANGFKVGKAD 728


>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
          Length = 1760

 Score =  124 bits (311), Expect = 1e-26
 Identities = 59/91 (64%), Positives = 75/91 (82%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            ARLE+IR+L+AY+++HGFKL QM VK+AFLNG IKEEVYV+Q PGF+++   +HVY   K
Sbjct: 1335 ARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSK 1394

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPRAWY+ L  FL+A+G+  GK D
Sbjct: 1395 ALYGLKQAPRAWYECLRDFLIANGFKVGKAD 1425


>gb|AAL76004.1|AF466646_12 putative gag-pol polyprotein [Zea mays]
          Length = 1694

 Score =  124 bits (311), Expect = 1e-26
 Identities = 59/91 (64%), Positives = 75/91 (82%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            ARLE+IR+L+AY+++HGFKL QM VK+AFLNG IKEEVYV+Q PGF+++   +HVY   K
Sbjct: 1438 ARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSK 1497

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPRAWY+ L  FL+A+G+  GK D
Sbjct: 1498 ALYGLKQAPRAWYECLRDFLIANGFKVGKAD 1528


>gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays]
          Length = 800

 Score =  124 bits (311), Expect = 1e-26
 Identities = 59/91 (64%), Positives = 75/91 (82%)
 Frame = -2

Query: 273 ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
           ARLE+IR+L+AY+++HGFKL QM VK+AFLNG IKEEVYV+Q PGF+++   +HVY   K
Sbjct: 417 ARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSK 476

Query: 93  ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
           ALYGLKQAPRAWY+ L  FL+A+G+  GK D
Sbjct: 477 ALYGLKQAPRAWYECLRDFLIANGFKVGKAD 507


>gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Zea mays]
          Length = 1604

 Score =  124 bits (311), Expect = 1e-26
 Identities = 59/91 (64%), Positives = 75/91 (82%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            ARLE+IR+L+AY+++HGFKL QM VK+AFLNG IKEEVYV+Q PGF+++   +HVY   K
Sbjct: 1335 ARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSK 1394

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPRAWY+ L  FL+A+G+  GK D
Sbjct: 1395 ALYGLKQAPRAWYECLRDFLIANGFKVGKAD 1425


>gb|ABF67921.1| Ji1 putative pol protein [Zea mays]
          Length = 1063

 Score =  124 bits (311), Expect = 1e-26
 Identities = 59/91 (64%), Positives = 75/91 (82%)
 Frame = -2

Query: 273 ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
           ARLE+IR+L+AY+++HGFKL QM VK+AFLNG IKEEVYV+Q PGF+++   +HVY   K
Sbjct: 638 ARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSK 697

Query: 93  ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
           ALYGLKQAPRAWY+ L  FL+A+G+  GK D
Sbjct: 698 ALYGLKQAPRAWYECLRDFLIANGFKVGKAD 728


>gb|AAN40035.1| putative gag-pol polyprotein [Zea mays]
          Length = 1706

 Score =  124 bits (311), Expect = 1e-26
 Identities = 59/91 (64%), Positives = 75/91 (82%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            ARLE+IR+L+AY+++HGFKL QM VK+AFLNG IKEEVYV+Q PGF+++   +HVY   K
Sbjct: 1485 ARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSK 1544

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPRAWY+ L  FL+A+G+  GK D
Sbjct: 1545 ALYGLKQAPRAWYECLRDFLIANGFKVGKAD 1575


>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
          Length = 1892

 Score =  124 bits (311), Expect = 1e-26
 Identities = 59/91 (64%), Positives = 75/91 (82%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            ARLE+IR+L+AY+++HGFKL QM VK+AFLNG IKEEVYV+Q PGF+++   +HVY   K
Sbjct: 1467 ARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSK 1526

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPRAWY+ L  FL+A+G+  GK D
Sbjct: 1527 ALYGLKQAPRAWYECLRDFLIANGFKVGKAD 1557


>gb|AAX96493.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|77548895|gb|ABA91692.1|
            retrotransposon protein, putative, unclassified,
            expressed [Oryza sativa Japonica Group]
          Length = 1299

 Score =  123 bits (309), Expect = 2e-26
 Identities = 61/91 (67%), Positives = 72/91 (79%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            AR+EAIRLL+A+++  GFKL QM VK+AFLNG I+EEVYV Q PGF+N   S+HV+   K
Sbjct: 961  ARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFSNHVFKLSK 1020

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPRAWYDRL  FLL  G+  GKVD
Sbjct: 1021 ALYGLKQAPRAWYDRLKNFLLVKGFTMGKVD 1051


>emb|CCI55376.1| PH01B035L11.21 [Phyllostachys edulis]
          Length = 2029

 Score =  123 bits (308), Expect = 3e-26
 Identities = 59/91 (64%), Positives = 74/91 (81%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            ARLEAIR+L+A+++  GFKL QM VK+AFLNG+I+EEVYV Q PGF+N    +HV+   K
Sbjct: 1557 ARLEAIRILLAFAASKGFKLYQMDVKSAFLNGLIEEEVYVRQPPGFENPKYPNHVFKLSK 1616

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPRAWY+RL  +LL+HG+  GKVD
Sbjct: 1617 ALYGLKQAPRAWYERLKSYLLSHGFEMGKVD 1647


>gb|ABA98847.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1417

 Score =  123 bits (308), Expect = 3e-26
 Identities = 61/91 (67%), Positives = 72/91 (79%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            AR+EAIRLL+A+++  GFKL QM VK+AFLNG I+EEVYV Q PGF+N    +HV+   K
Sbjct: 993  ARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSK 1052

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPRAWYDRL  FLLA G+  GKVD
Sbjct: 1053 ALYGLKQAPRAWYDRLKNFLLAKGFTMGKVD 1083


>gb|AAP53706.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1419

 Score =  123 bits (308), Expect = 3e-26
 Identities = 61/91 (67%), Positives = 72/91 (79%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            AR+EAIRLL+A+++  GFKL QM VK+AFLNG I+EEVYV Q PGF+N    +HV+   K
Sbjct: 995  ARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSK 1054

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPRAWYDRL  FLLA G+  GKVD
Sbjct: 1055 ALYGLKQAPRAWYDRLKNFLLAKGFTMGKVD 1085


>gb|ABA96551.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1487

 Score =  122 bits (307), Expect = 4e-26
 Identities = 60/91 (65%), Positives = 72/91 (79%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            AR+EAIRLL+A+++  GFKL QM VK+AFLNG I+EEVYV Q PGF+N+   +HV+   K
Sbjct: 1063 ARIEAIRLLLAFAASKGFKLHQMDVKSAFLNGFIQEEVYVKQPPGFENSDFPNHVFKLSK 1122

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPRAWYDRL  FLL  G+  GKVD
Sbjct: 1123 ALYGLKQAPRAWYDRLKNFLLTKGFTMGKVD 1153


>emb|CAD39835.2| OSJNBb0072N21.1 [Oryza sativa Japonica Group]
          Length = 420

 Score =  122 bits (306), Expect = 5e-26
 Identities = 60/91 (65%), Positives = 72/91 (79%)
 Frame = -2

Query: 273 ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
           AR+EAIRLL+A+++  GFKL QM VK+AFLNG I+EEVYV Q PGF+N+   +HV+   K
Sbjct: 70  ARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQLPGFENSDFPNHVFKLSK 129

Query: 93  ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            LYGLKQAPRAWYDRL  FLLA G+  GKVD
Sbjct: 130 TLYGLKQAPRAWYDRLKNFLLAKGFTMGKVD 160


>gb|ABA98045.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1452

 Score =  122 bits (305), Expect = 6e-26
 Identities = 60/90 (66%), Positives = 71/90 (78%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            AR+EAIRLL+A+++  GFKL QM VK+AFLNG I+EEVYV Q PGF+N    +HV+   K
Sbjct: 1155 ARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSK 1214

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKV 4
            ALYGLKQAPRAWYDRL  FLLA GY  GK+
Sbjct: 1215 ALYGLKQAPRAWYDRLKNFLLAKGYTMGKI 1244


>emb|CAE04585.2| OSJNBb0006N15.2 [Oryza sativa Japonica Group]
          Length = 1134

 Score =  121 bits (304), Expect = 8e-26
 Identities = 60/91 (65%), Positives = 71/91 (78%)
 Frame = -2

Query: 273  ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
            AR+EAIRLL+A+++  GFKL QM VK+AFLNG I+EEVYV Q PGF+N    +HV+   K
Sbjct: 769  ARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSK 828

Query: 93   ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
            ALYGLKQAPRAWYDRL  F LA G+  GKVD
Sbjct: 829  ALYGLKQAPRAWYDRLKNFFLAKGFTMGKVD 859


>gb|ABA98369.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 904

 Score =  121 bits (303), Expect = 1e-25
 Identities = 59/91 (64%), Positives = 71/91 (78%)
 Frame = -2

Query: 273 ARLEAIRLLIAYSSFHGFKLQQMGVKTAFLNGVIKEEVYVDQTPGFKNASQSDHVYIHDK 94
           AR+EAIRLL+ +++  GFKL QM VK+AFLNG I+EEVYV Q PGF+N    +H++   K
Sbjct: 573 ARIEAIRLLLTFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHIFKLSK 632

Query: 93  ALYGLKQAPRAWYDRLS*FLLAHGYVRGKVD 1
           ALYGLKQAPRAWYDRL  FLLA G+  GKVD
Sbjct: 633 ALYGLKQAPRAWYDRLKNFLLAKGFTMGKVD 663