BLASTX nr result
ID: Rheum21_contig00039652
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00039652
(253 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga... 82 7e-14
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 75 7e-12
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 75 7e-12
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 75 7e-12
ref|XP_004306275.1| PREDICTED: putative ribonuclease H protein A... 69 6e-10
ref|XP_004293144.1| PREDICTED: putative ribonuclease H protein A... 67 2e-09
gb|EMJ28392.1| hypothetical protein PRUPE_ppa019361mg, partial [... 62 8e-08
gb|EMJ11928.1| hypothetical protein PRUPE_ppa021798mg [Prunus pe... 62 1e-07
ref|XP_006582462.1| PREDICTED: putative ribonuclease H protein A... 61 2e-07
ref|XP_006493638.1| PREDICTED: putative ribonuclease H protein A... 61 2e-07
ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein A... 60 2e-07
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 60 2e-07
ref|XP_004292011.1| PREDICTED: uncharacterized protein LOC101291... 60 3e-07
gb|ABA96203.1| retrotransposon protein, putative, unclassified, ... 60 3e-07
gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japo... 60 3e-07
gb|EMJ18820.1| hypothetical protein PRUPE_ppa016422mg, partial [... 59 5e-07
ref|NP_001176302.1| Os11g0106066 [Oryza sativa Japonica Group] g... 59 9e-07
ref|XP_002466537.1| hypothetical protein SORBIDRAFT_01g009615 [S... 59 9e-07
ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S... 58 1e-06
ref|XP_004301440.1| PREDICTED: putative ribonuclease H protein A... 57 2e-06
>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1389
Score = 82.0 bits (201), Expect = 7e-14
Identities = 38/84 (45%), Positives = 53/84 (63%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GG+G RKA+ N ALQ KLLWKI+ +N WV+++T KYLK Q++L + N S QW
Sbjct: 867 GGVGFRKAEVTNIALQMKLLWKIMVSKDNIWVKLVTQKYLKEQNLLVCKIPSNASWQWKN 926
Query: 181 MIELMPEFKSGLIWQVGNGKTIKF 252
++ F GL W +G+G+ I F
Sbjct: 927 LLRHRNFFSKGLRWLIGDGQDISF 950
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 75.5 bits (184), Expect = 7e-12
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLGLR A+D N+A K+ W+I + + WV+V+ +KY+K LH + + NCS W
Sbjct: 1387 GGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRS 1446
Query: 181 MIELMPEFKSGLIWQVGNGKTIKF 252
+++ + W VGNG+ I F
Sbjct: 1447 IMKGKDVLAGAIKWNVGNGRKINF 1470
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 75.5 bits (184), Expect = 7e-12
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLGLR A+D N+A K+ W+I + + WV+V+ +KY+K LH + + NCS W
Sbjct: 855 GGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRS 914
Query: 181 MIELMPEFKSGLIWQVGNGKTIKF 252
+++ + W VGNG+ I F
Sbjct: 915 IMKGKDVLAGAIKWNVGNGRKINF 938
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 75.5 bits (184), Expect = 7e-12
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLGLR A+D N+A K+ W+I + + WV+V+ +KY+K LH + + NCS W
Sbjct: 855 GGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRS 914
Query: 181 MIELMPEFKSGLIWQVGNGKTIKF 252
+++ + W VGNG+ I F
Sbjct: 915 IMKGKDVLAGAIKWNVGNGRKINF 938
>ref|XP_004306275.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 727
Score = 68.9 bits (167), Expect = 6e-10
Identities = 31/84 (36%), Positives = 48/84 (57%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLG+R + NKA KL WKI+ +N+WV+++ +KYLK +KK + S W
Sbjct: 278 GGLGIRPSAYFNKAAVAKLGWKIIMDHSNWWVQIVKNKYLKNHSFFETKKKSSDSVAWKG 337
Query: 181 MIELMPEFKSGLIWQVGNGKTIKF 252
+++ G+ W +G GK +KF
Sbjct: 338 ILDSRDLITKGMRWTIGTGKEVKF 361
>ref|XP_004293144.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 321
Score = 67.0 bits (162), Expect = 2e-09
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHIL--HYEKKRNCS*QW 174
GGLG++++ DMN+A+ K W++ N W ++ KYL + + +Y+K NCS W
Sbjct: 9 GGLGIKRSADMNRAMLAKASWRMAQGDNGLWNKIYQQKYLHSSSMFQDNYKKPSNCSPTW 68
Query: 175 SKMIELMPEFKSGLIWQVGNGKTIKF 252
+ ++ G+ W++GNG T KF
Sbjct: 69 TAIVSGASLLNKGMRWRIGNGCTAKF 94
>gb|EMJ28392.1| hypothetical protein PRUPE_ppa019361mg, partial [Prunus persica]
Length = 954
Score = 62.0 bits (149), Expect = 8e-08
Identities = 32/84 (38%), Positives = 44/84 (52%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLG+R A NK KL W L +N+W +++ KYLK L KK + S W
Sbjct: 635 GGLGVRSAALFNKVALAKLGWICLTDSSNWWAQIMLKKYLKNAGFLVTAKKTSHSSTWKA 694
Query: 181 MIELMPEFKSGLIWQVGNGKTIKF 252
++E G+ W VGNG++I F
Sbjct: 695 ILEARSVLHKGIRWIVGNGQSIPF 718
>gb|EMJ11928.1| hypothetical protein PRUPE_ppa021798mg [Prunus persica]
Length = 1171
Score = 61.6 bits (148), Expect = 1e-07
Identities = 32/84 (38%), Positives = 45/84 (53%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLG+R A NK KL W L +N+W +++ KYLK + L KK + S W
Sbjct: 846 GGLGVRSAALFNKTALAKLGWICLTDSSNWWAQIMLKKYLKNEGSLVTAKKTSHSSTWKA 905
Query: 181 MIELMPEFKSGLIWQVGNGKTIKF 252
++E G+ W VGNG++I F
Sbjct: 906 ILEARYVLHKGIRWIVGNGQSIPF 929
>ref|XP_006582462.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 779
Score = 60.8 bits (146), Expect = 2e-07
Identities = 26/79 (32%), Positives = 46/79 (58%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLG+RKA++ N +L K +W+++ P+ WV+++T+KYL I+ R + WS
Sbjct: 447 GGLGVRKAREANISLLGKHIWEVIHNPDKLWVKLMTNKYLNHNSIVQSMSPRGATFTWSS 506
Query: 181 MIELMPEFKSGLIWQVGNG 237
+++ K G ++G G
Sbjct: 507 ILKATDFLKDGFFIRIGRG 525
>ref|XP_006493638.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 360
Score = 60.8 bits (146), Expect = 2e-07
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNC-S*QWS 177
GGLGL++ MN AL K+ W ++A PN+ WV+V+ KY + L C S W
Sbjct: 99 GGLGLKQLNLMNDALLMKIGWVLIASPNSLWVKVLLSKYGLAPNALPSTLPTKCGSYMWK 158
Query: 178 KMIELMPEFKSGLIWQVGNGKTIKF 252
+ + E G+ W +GNG ++F
Sbjct: 159 AVGGIWHEVLKGIKWDIGNGNRVRF 183
>ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 407
Score = 60.5 bits (145), Expect = 2e-07
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHIL--HYEKKRNCS*QW 174
G +G++K +DMN+A+ K+ W++ W + +KYLK + +YE +CS W
Sbjct: 114 GDIGIKKTEDMNQAMLAKISWRMFQCDKGLWASMFAEKYLKNCCLFDDNYEVAVDCSSTW 173
Query: 175 SKMIELMPEFKSGLIWQVGNGKTIKF 252
+I +S L W++G+GK+IKF
Sbjct: 174 RGIIFGAKLLRSNLKWRLGDGKSIKF 199
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 60.5 bits (145), Expect = 2e-07
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHI-LHYEKKRNCS*QWS 177
GGLG ++ MN+A K+LW ++ +P+ W RV+ KY + + + + S W
Sbjct: 281 GGLGFKRPHHMNEAFLMKMLWNLIKQPDKLWCRVLYSKYGRNNDLNNNISSQPYDSPLWK 340
Query: 178 KMIELMPEFKSGLIWQVGNGKTIKF 252
++ + +FK +IWQ+G+G++ F
Sbjct: 341 AIVGIWDDFKRHVIWQIGDGRSTNF 365
>ref|XP_004292011.1| PREDICTED: uncharacterized protein LOC101291306 [Fragaria vesca
subsp. vesca]
Length = 948
Score = 60.1 bits (144), Expect = 3e-07
Identities = 30/83 (36%), Positives = 40/83 (48%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLG + N AL K W+IL++PN+ W V+ +Y + K S WS
Sbjct: 504 GGLGFKDLHHFNLALLAKQCWRILSQPNSMWAMVLKARYFPNTGFMEAGKGHRPSWSWSS 563
Query: 181 MIELMPEFKSGLIWQVGNGKTIK 249
MI G WQV NGK+I+
Sbjct: 564 MIAARDLIAKGCCWQVMNGKSIR 586
>gb|ABA96203.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1378
Score = 60.1 bits (144), Expect = 3e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GG+G R + N AL K +W++L+ P++ RV+ +Y + +L+ K S W
Sbjct: 315 GGMGFRDLQSFNLALLAKQVWRLLSDPDSLCARVLRARYYRDGKLLNARMKSGSSYTWQS 374
Query: 181 MIELMPEFKSGLIWQVGNGKTIK 249
++ + FK G IW+VG+G IK
Sbjct: 375 ILAGLQCFKQGYIWRVGDGTQIK 397
>gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japonica Group]
Length = 1395
Score = 60.1 bits (144), Expect = 3e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GG+G R + N AL K +W++L+ P++ RV+ +Y + +L+ K S W
Sbjct: 345 GGMGFRDLQSFNLALLAKQVWRLLSDPDSLCARVLRARYYRDGKLLNARMKSGSSYTWQS 404
Query: 181 MIELMPEFKSGLIWQVGNGKTIK 249
++ + FK G IW+VG+G IK
Sbjct: 405 ILAGLQCFKQGYIWRVGDGTQIK 427
>gb|EMJ18820.1| hypothetical protein PRUPE_ppa016422mg, partial [Prunus persica]
Length = 153
Score = 59.3 bits (142), Expect = 5e-07
Identities = 31/84 (36%), Positives = 45/84 (53%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLG+R A N KL W L +N+W +V KYL+ ++L +KK + S W
Sbjct: 66 GGLGVRSASHFNMIALDKLGWICLTNKSNWWAQVGRMKYLRKDNVLDLKKKSSHSSAWQA 125
Query: 181 MIELMPEFKSGLIWQVGNGKTIKF 252
+++ K + W VGNGK+I F
Sbjct: 126 ILDAKFVLKLEVRWIVGNGKSISF 149
>ref|NP_001176302.1| Os11g0106066 [Oryza sativa Japonica Group] gi|77548275|gb|ABA91072.1|
retrotransposon protein, putative, unclassified [Oryza
sativa Japonica Group] gi|255679693|dbj|BAH95030.1|
Os11g0106066 [Oryza sativa Japonica Group]
Length = 1690
Score = 58.5 bits (140), Expect = 9e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLG R + N+AL + W++L PN+ RV+ KY ++ N S W
Sbjct: 1339 GGLGFRDYRLFNQALLARQAWRLLEFPNSLCARVLKAKYFPNGSLIDTTFSSNVSPTWRA 1398
Query: 181 MIELMPEFKSGLIWQVGNGKTIK 249
+I + K G+IW+VGNG++I+
Sbjct: 1399 IIYGLELLKKGIIWRVGNGQSIR 1421
>ref|XP_002466537.1| hypothetical protein SORBIDRAFT_01g009615 [Sorghum bicolor]
gi|241920391|gb|EER93535.1| hypothetical protein
SORBIDRAFT_01g009615 [Sorghum bicolor]
Length = 229
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLG R N A+ K W++L +PN+ +V+ KY +L + K S W
Sbjct: 82 GGLGFRDIHSFNLAMLAKQSWRLLQQPNSLCAKVLKAKYFPDTSVLLAQPKAGMSYSWRS 141
Query: 181 MIELMPEFKSGLIWQVGNG 237
++E + K GLIW+VG+G
Sbjct: 142 ILEGLKIVKEGLIWRVGDG 160
>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
gi|241926916|gb|EES00061.1| hypothetical protein
SORBIDRAFT_03g001780 [Sorghum bicolor]
Length = 631
Score = 57.8 bits (138), Expect = 1e-06
Identities = 26/83 (31%), Positives = 44/83 (53%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLG R N A+ + W++L P++ +V+ +Y ILH + S W
Sbjct: 432 GGLGFRDLHLFNLAMLSRQAWRLLTNPDSLCGQVLKARYFPHSDILHCSPRPRISYTWRS 491
Query: 181 MIELMPEFKSGLIWQVGNGKTIK 249
+++ + K G+IW++GNGK +K
Sbjct: 492 ILKGVALLKEGIIWRIGNGKNVK 514
>ref|XP_004301440.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 786
Score = 57.4 bits (137), Expect = 2e-06
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = +1
Query: 1 GGLGLRKAKDMNKALQFKLLWKILAKPNNFWVRVITDKYLKTQHILHYEKKRNCS*QWSK 180
GGLG R N +L K W+++ +PN+ W V+ +Y L K S W+
Sbjct: 290 GGLGFRDLHQFNMSLLAKQCWRLVEEPNSLWASVLKARYFPNCGFLEATKGYRASWSWAS 349
Query: 181 MIELMPEFKSGLIWQVGNGKTIK 249
+IE G WQV NGK+I+
Sbjct: 350 LIEARDLVFQGCCWQVVNGKSIQ 372