BLASTX nr result
ID: Rheum21_contig00039587
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00039587
(277 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 133 2e-29
gb|ABD32732.1| hypothetical protein MtrDRAFT_AC150777g7v1 [Medic... 125 4e-27
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 124 1e-26
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris] 124 1e-26
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 122 4e-26
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 122 4e-26
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 121 8e-26
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 120 1e-25
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 120 1e-25
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group] 120 1e-25
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 120 1e-25
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group] 120 2e-25
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 120 2e-25
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 120 2e-25
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 120 2e-25
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 119 3e-25
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 119 3e-25
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 119 5e-25
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 119 5e-25
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 119 5e-25
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 133 bits (335), Expect = 2e-29
Identities = 63/84 (75%), Positives = 74/84 (88%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR V GF+QREGVD+NE+FSPVVRHTSIR+LL++V NLELEQLDVKTAFLHG LEEE
Sbjct: 857 ARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEE 916
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY+ QP+GF V GKE+HVC+LK+S
Sbjct: 917 IYMTQPDGFQVPGKENHVCKLKKS 940
>gb|ABD32732.1| hypothetical protein MtrDRAFT_AC150777g7v1 [Medicago truncatula]
Length = 624
Score = 125 bits (315), Expect = 4e-27
Identities = 61/84 (72%), Positives = 72/84 (85%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR VV GF+Q+EG+DFNE+FSPVVRHTSIR+LL+ V + +LELEQLDVKTAFLHG LEEE
Sbjct: 231 ARLVVKGFNQKEGIDFNEIFSPVVRHTSIRVLLAFVALFDLELEQLDVKTAFLHGELEEE 290
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY+EQ +GF GKE VCRLK+S
Sbjct: 291 IYMEQSDGFIAPGKEHLVCRLKKS 314
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 124 bits (311), Expect = 1e-26
Identities = 60/84 (71%), Positives = 71/84 (84%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR V GF Q GVD+N+VFSPVV+H+SIR S+V M++LELEQLDVKTAFLHG LEEE
Sbjct: 872 ARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEE 931
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY++QPEGF V GKED+VC+LKRS
Sbjct: 932 IYMDQPEGFIVPGKEDYVCKLKRS 955
>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
Length = 1556
Score = 124 bits (311), Expect = 1e-26
Identities = 59/84 (70%), Positives = 74/84 (88%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR VV GF QR+G+DFNE+FSPVV+ +SIRI+LSL +LE+EQ+DVKTAFLHG LEEE
Sbjct: 820 ARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEE 879
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY++QP+GF V+GKEDHVCRL++S
Sbjct: 880 IYMKQPDGFLVEGKEDHVCRLRKS 903
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 122 bits (307), Expect = 4e-26
Identities = 58/84 (69%), Positives = 72/84 (85%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR VV GF+QR+G+DF+E+FSPVV+ TSIR +L L NLE+EQ+DVKTAFLHG LEEE
Sbjct: 877 ARLVVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEE 936
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY+EQP+GF KGKED+VCRL++S
Sbjct: 937 IYMEQPDGFQQKGKEDYVCRLRKS 960
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 122 bits (307), Expect = 4e-26
Identities = 56/84 (66%), Positives = 73/84 (86%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR VV GF Q++G+DF+E+FSPVV+ +SIR++L L ++E+EQ+DVKTAFLHG L+EE
Sbjct: 874 ARLVVKGFSQKKGIDFDEIFSPVVKFSSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDEE 933
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY+EQPEGF VKGKED+VCRLK+S
Sbjct: 934 IYMEQPEGFKVKGKEDYVCRLKKS 957
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 121 bits (304), Expect = 8e-26
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = -3
Query: 251 RFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEEI 72
R V GF Q GVD+N+VFSPVV+H+SIR S+V M++LELEQLDVKT FLHG LEEEI
Sbjct: 873 RLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEI 932
Query: 71 YIEQPEGFSVKGKEDHVCRLKRS 3
Y++QPEGF V GKED+VC+LKRS
Sbjct: 933 YMDQPEGFIVPGKEDYVCKLKRS 955
>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1005
Score = 120 bits (302), Expect = 1e-25
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
A+ V GF Q GVD+N+VFSPVV+H+SIR S+V M++LELEQLDVKTAFLHG LEEE
Sbjct: 556 AKLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEE 615
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY++QPEGF V GKE +VC+LKRS
Sbjct: 616 IYMDQPEGFIVPGKEGYVCKLKRS 639
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 120 bits (302), Expect = 1e-25
Identities = 58/84 (69%), Positives = 71/84 (84%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR V G+ Q G+DFN+VFSPVV+H+SIR LLS+V M++ ELEQ+DVKTAFLHG LEE+
Sbjct: 791 ARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEED 850
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY+EQPEGF V GKE+ VCRLK+S
Sbjct: 851 IYMEQPEGFVVPGKENLVCRLKKS 874
>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
Length = 621
Score = 120 bits (302), Expect = 1e-25
Identities = 58/84 (69%), Positives = 71/84 (84%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR V G+ Q G+DFN+VFSPVV+H+SIR LLS+V M++ ELEQ+DVKTAFLHG LEE+
Sbjct: 268 ARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEED 327
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY+EQPEGF V GKE+ VCRLK+S
Sbjct: 328 IYMEQPEGFVVPGKENLVCRLKKS 351
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 120 bits (302), Expect = 1e-25
Identities = 57/85 (67%), Positives = 70/85 (82%)
Frame = -3
Query: 257 LARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEE 78
+AR V GF Q+EGVD+NE+FSPVV+H SIR LLS+VV N+EL+Q+DVKTAFLHG+LEE
Sbjct: 881 IARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEE 940
Query: 77 EIYIEQPEGFSVKGKEDHVCRLKRS 3
EIY+ QPEGF +K + VC LKRS
Sbjct: 941 EIYMAQPEGFEIKRGSNKVCLLKRS 965
>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
Length = 576
Score = 120 bits (301), Expect = 2e-25
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR V GF Q GVD+N+VFSPVV+H+SIR S+V M++LEL+QLDVKT FLHG LE+E
Sbjct: 205 ARLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVAMDDLELKQLDVKTTFLHGELEDE 264
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY++QPEGF V GKED+VC+LKRS
Sbjct: 265 IYMDQPEGFIVPGKEDYVCKLKRS 288
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 120 bits (301), Expect = 2e-25
Identities = 57/84 (67%), Positives = 71/84 (84%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR V G+ Q G+DFN++FSPVV+H+SIR LLS+V M++ ELEQ+DVKTAFLHG LEE+
Sbjct: 640 ARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEED 699
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY+EQPEGF V GKE+ VCRLK+S
Sbjct: 700 IYMEQPEGFVVPGKENLVCRLKKS 723
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 120 bits (301), Expect = 2e-25
Identities = 57/84 (67%), Positives = 71/84 (84%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR V G+ Q G+DFN++FSPVV+H+SIR LLS+V M++ ELEQ+DVKTAFLHG LEE+
Sbjct: 808 ARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEED 867
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY+EQPEGF V GKE+ VCRLK+S
Sbjct: 868 IYMEQPEGFVVPGKENLVCRLKKS 891
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 120 bits (300), Expect = 2e-25
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR V GF QREGVDFNE+FSPVV+H+SIRILL++V + +LELEQ+DVKTAFLHG LEE+
Sbjct: 880 ARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQ 939
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
I + QPEGF K KED+VC L +S
Sbjct: 940 ILMAQPEGFECKDKEDYVCLLHKS 963
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 119 bits (299), Expect = 3e-25
Identities = 58/84 (69%), Positives = 68/84 (80%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR V GF Q GVD+N+VFSPVV+H+SIR +V M++LELEQLDVKT FLHG LEEE
Sbjct: 818 ARLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFCIVAMHDLELEQLDVKTIFLHGELEEE 877
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY++QPEGF V GKED VC+LKRS
Sbjct: 878 IYMDQPEGFIVPGKEDDVCKLKRS 901
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 119 bits (299), Expect = 3e-25
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
+R V GF Q+EG+D+NEVFSPVV+H SIR+LL++V + NLEL+QLDVKTAFLHG LEEE
Sbjct: 980 SRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEE 1039
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY++QPEGF K DHVC LK+S
Sbjct: 1040 IYMKQPEGFVDSEKSDHVCFLKKS 1063
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 119 bits (297), Expect = 5e-25
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR V G+ Q GVD+N+VFSPVV+H+SIR LS+V ++LELEQLDVKTAFLHG LEE+
Sbjct: 883 ARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEED 942
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY++QPEGF V GKE +VC+LKRS
Sbjct: 943 IYMDQPEGFIVPGKEKYVCKLKRS 966
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 119 bits (297), Expect = 5e-25
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR V G+ Q GVD+N+VFSPVV+H+SIR LS+V ++LELEQLDVKTAFLHG LEE+
Sbjct: 883 ARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEED 942
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY++QPEGF V GKE +VC+LKRS
Sbjct: 943 IYMDQPEGFIVPGKEKYVCKLKRS 966
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 119 bits (297), Expect = 5e-25
Identities = 56/84 (66%), Positives = 71/84 (84%)
Frame = -3
Query: 254 ARFVVIGFDQREGVDFNEVFSPVVRHTSIRILLSLVVMNNLELEQLDVKTAFLHGYLEEE 75
AR + G+ Q G+DFN+VFSPVV+H+SIR LLS+V M++ ELEQ+DVKTAFLHG LEE+
Sbjct: 1089 ARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEED 1148
Query: 74 IYIEQPEGFSVKGKEDHVCRLKRS 3
IY+EQP+GF V GKE+ VCRLK+S
Sbjct: 1149 IYMEQPKGFVVPGKENLVCRLKKS 1172