BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00039569
         (266 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAE05579.3| OSJNBa0032N05.7 [Oryza sativa Japonica Group]         112   7e-23
gb|ABA96443.2| retrotransposon protein, putative, Ty3-gypsy subc...   110   1e-22
gb|AAO19368.1| putative polyprotein [Oryza sativa Japonica Group]     110   2e-22
gb|ABF98364.1| retrotransposon protein, putative, unclassified [...   110   2e-22
ref|NP_001068285.2| Os11g0617500 [Oryza sativa Japonica Group] g...   110   3e-22
gb|ABG22552.1| retrotransposon protein, putative, unclassified, ...   110   3e-22
emb|CAE04413.2| OSJNBb0040D15.3 [Oryza sativa Japonica Group]         109   4e-22
emb|CAE02458.1| OSJNBa0042D13.11 [Oryza sativa Japonica Group]        109   4e-22
gb|ABB47124.1| retrotransposon protein, putative, Ty3-gypsy subc...   108   6e-22
gb|ABF97034.1| retrotransposon protein, putative, Ty3-gypsy subc...   108   6e-22
gb|AAM74390.1|AC119149_5 Putative retroelement [Oryza sativa Jap...   108   6e-22
gb|AAX95295.1| Reverse transcriptase (RNA-dependent DNA polymera...   108   7e-22
emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa Japonica Group]        108   1e-21
gb|ABA97615.1| retrotransposon protein, putative, unclassified [...   107   1e-21
gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Jap...   107   2e-21
gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subc...   107   2e-21
gb|ABF95613.1| retrotransposon protein, putative, Ty3-gypsy subc...   107   2e-21
emb|CAD39384.2| OSJNBb0016B03.14 [Oryza sativa Japonica Group]        107   2e-21
gb|AAO37471.1| putative polyprotein [Oryza sativa Japonica Group...   106   3e-21
gb|ABA97412.1| retrotransposon protein, putative, Ty3-gypsy subc...   106   3e-21

>emb|CAE05579.3| OSJNBa0032N05.7 [Oryza sativa Japonica Group]
          Length = 1154

 Score =  112 bits (279), Expect = 7e-23
 Identities = 52/88 (59%), Positives = 63/88 (71%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           GM+LN EKCVFGV+AGK LGF++S RGI+ N +K++A   M+PP SV+EVQ+  G I  L
Sbjct: 705 GMKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVREVQKLAGQIAAL 764

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF SK AER LPFF  LR    F WTP
Sbjct: 765 SRFLSKAAERGLPFFKTLRGAGKFSWTP 792


>gb|ABA96443.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1472

 Score =  110 bits (276), Expect = 1e-22
 Identities = 51/88 (57%), Positives = 63/88 (71%)
 Frame = -2

Query: 265  GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
            GM+LN EKCVFGV+AGK LGF++S RGI+ N +K++A   M+PP SV+EVQ+  G I  +
Sbjct: 920  GMKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIRQMKPPSSVREVQKLAGRIAAI 979

Query: 85   GRFCSKLAERSLPFFSALRNPQSFQWTP 2
             RF SK AER LPFF  LR    F WTP
Sbjct: 980  SRFLSKAAERGLPFFKTLRGAGKFSWTP 1007


>gb|AAO19368.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 777

 Score =  110 bits (275), Expect = 2e-22
 Identities = 51/88 (57%), Positives = 62/88 (70%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           GM+LN EKCVFGV+ GK LGF++S RGI+ N +K++A   M+PP SV+EVQ+  G I  L
Sbjct: 229 GMKLNPEKCVFGVRTGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVREVQKLTGRIAVL 288

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF SK AER LPFF  LR    F WTP
Sbjct: 289 SRFLSKAAERGLPFFKTLRGAGKFNWTP 316


>gb|ABF98364.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 790

 Score =  110 bits (275), Expect = 2e-22
 Identities = 51/88 (57%), Positives = 62/88 (70%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           GM+LN EKCVFGV+ GK LGF++S RGI+ N +K++A   M+PP SV+EVQ+  G I  L
Sbjct: 229 GMKLNPEKCVFGVRTGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVREVQKLTGRIAVL 288

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF SK AER LPFF  LR    F WTP
Sbjct: 289 SRFLSKAAERGLPFFKTLRGAGKFNWTP 316


>ref|NP_001068285.2| Os11g0617500 [Oryza sativa Japonica Group]
           gi|255680267|dbj|BAF28648.2| Os11g0617500, partial
           [Oryza sativa Japonica Group]
          Length = 627

 Score =  110 bits (274), Expect = 3e-22
 Identities = 51/88 (57%), Positives = 63/88 (71%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           G +LN EKCVFGV+AGK LGF++S RGI+ N +K++A   M+PP SV+EVQ+  G I  L
Sbjct: 244 GTKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPLSVREVQKLAGRIAAL 303

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF SK AER LPFF  LR  + F WTP
Sbjct: 304 NRFLSKAAERGLPFFKTLRGVEKFHWTP 331


>gb|ABG22552.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
          Length = 612

 Score =  110 bits (274), Expect = 3e-22
 Identities = 51/88 (57%), Positives = 63/88 (71%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           G +LN EKCVFGV+AGK LGF++S RGI+ N +K++A   M+PP SV+EVQ+  G I  L
Sbjct: 229 GTKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPLSVREVQKLAGRIAAL 288

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF SK AER LPFF  LR  + F WTP
Sbjct: 289 NRFLSKAAERGLPFFKTLRGVEKFHWTP 316


>emb|CAE04413.2| OSJNBb0040D15.3 [Oryza sativa Japonica Group]
          Length = 246

 Score =  109 bits (272), Expect = 4e-22
 Identities = 50/88 (56%), Positives = 64/88 (72%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           GM+LN +KCVFGV+A K LGF++S RGI+ N +K++A   M PP+SV+EVQ+ +G I  L
Sbjct: 96  GMKLNHDKCVFGVRANKLLGFLVSDRGIEANPEKIDAIQQMMPPKSVREVQKLMGRIVAL 155

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
           GRF S+ AER LPFF  LR    F WTP
Sbjct: 156 GRFLSRAAERGLPFFKTLRGAGKFNWTP 183


>emb|CAE02458.1| OSJNBa0042D13.11 [Oryza sativa Japonica Group]
          Length = 992

 Score =  109 bits (272), Expect = 4e-22
 Identities = 52/88 (59%), Positives = 61/88 (69%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           G+RLN EKCVFGV+AGK LGF++S RGI+ N +K+ A   M+PP SV EVQ+  G I  L
Sbjct: 535 GIRLNPEKCVFGVRAGKLLGFLVSKRGIEANPEKINAIQQMKPPSSVHEVQKLAGRIAAL 594

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF SK AER LPFF  LR    F WTP
Sbjct: 595 SRFLSKAAERGLPFFKTLRGAGKFNWTP 622


>gb|ABB47124.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 999

 Score =  108 bits (271), Expect = 6e-22
 Identities = 50/88 (56%), Positives = 62/88 (70%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           GM+LN EKCVFG++AGK L F+ S RGI+ N +K++    M+PP SV+EVQ+  G I  L
Sbjct: 336 GMKLNPEKCVFGIRAGKLLDFLFSERGIEANPEKIDVIQQMKPPSSVREVQKLAGRIAAL 395

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF SK AER LPFF ALR  + F WTP
Sbjct: 396 SRFLSKAAERGLPFFKALRGAEKFNWTP 423


>gb|ABF97034.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1908

 Score =  108 bits (271), Expect = 6e-22
 Identities = 51/88 (57%), Positives = 62/88 (70%)
 Frame = -2

Query: 265  GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
            G++LN EKCVFGV+AGK LGF++S RGI+ N +K++A   M+PP SV EVQ+  G I  L
Sbjct: 1090 GIKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVHEVQKLAGRIAAL 1149

Query: 85   GRFCSKLAERSLPFFSALRNPQSFQWTP 2
             RF SK AER LPFF  LR    F WTP
Sbjct: 1150 SRFLSKAAERGLPFFKTLRGAGKFNWTP 1177


>gb|AAM74390.1|AC119149_5 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1123

 Score =  108 bits (271), Expect = 6e-22
 Identities = 50/88 (56%), Positives = 62/88 (70%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           GM+LN EKCVFG++AGK L F+ S RGI+ N +K++    M+PP SV+EVQ+  G I  L
Sbjct: 413 GMKLNPEKCVFGIRAGKLLDFLFSERGIEANPEKIDVIQQMKPPSSVREVQKLAGRIAAL 472

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF SK AER LPFF ALR  + F WTP
Sbjct: 473 SRFLSKAAERGLPFFKALRGAEKFNWTP 500


>gb|AAX95295.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
           [Oryza sativa Japonica Group]
           gi|108864239|gb|ABA92634.2| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1146

 Score =  108 bits (270), Expect = 7e-22
 Identities = 51/88 (57%), Positives = 62/88 (70%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           GM+LN EKCVF V+AGK LGF++S RGI+ N +K++A   M+PP SV+EVQ+  G I  L
Sbjct: 586 GMKLNPEKCVFSVRAGKLLGFLLSKRGIEANPEKIDAIQQMKPPSSVREVQKLAGRIVAL 645

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF SK AER LPFF  LR    F WTP
Sbjct: 646 SRFLSKAAERGLPFFKTLRGAGKFNWTP 673


>emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa Japonica Group]
          Length = 1847

 Score =  108 bits (269), Expect = 1e-21
 Identities = 51/88 (57%), Positives = 61/88 (69%)
 Frame = -2

Query: 265  GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
            G+RLN EKCVFGV+AGK LGF++S RGI+ N +K++A   M+PP SV EVQ+  G I  L
Sbjct: 1119 GIRLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVHEVQKLAGRIAAL 1178

Query: 85   GRFCSKLAERSLPFFSALRNPQSFQWTP 2
             RF SK  ER LPFF  LR    F WTP
Sbjct: 1179 SRFLSKAPERGLPFFKTLRGAGKFNWTP 1206


>gb|ABA97615.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 827

 Score =  107 bits (268), Expect = 1e-21
 Identities = 49/88 (55%), Positives = 62/88 (70%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           G++LN EKCVFG++AGK LGF++S RGI+ N +K++A   M+PP SV EVQ+  G I  L
Sbjct: 473 GIKLNPEKCVFGIRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVHEVQKLAGRITAL 532

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF  K+AER LPFF  LR    F WTP
Sbjct: 533 SRFLPKVAERGLPFFKTLRGMGKFSWTP 560


>gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1722

 Score =  107 bits (267), Expect = 2e-21
 Identities = 50/88 (56%), Positives = 62/88 (70%)
 Frame = -2

Query: 265  GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
            G++LN EKCVFGV+AGK LGF++S RGI+ N +K++A   M+PP SV EVQ+  G I  L
Sbjct: 950  GIKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVHEVQKLAGRIVAL 1009

Query: 85   GRFCSKLAERSLPFFSALRNPQSFQWTP 2
             RF S+ AER LPFF  LR    F WTP
Sbjct: 1010 SRFLSRAAERGLPFFKTLRGAGKFNWTP 1037


>gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1735

 Score =  107 bits (267), Expect = 2e-21
 Identities = 50/88 (56%), Positives = 62/88 (70%)
 Frame = -2

Query: 265  GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
            G++LN EKCVFGV+AGK LGF++S RGI+ N +K++A   M+PP SV EVQ+  G I  L
Sbjct: 963  GIKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVHEVQKLAGRIVAL 1022

Query: 85   GRFCSKLAERSLPFFSALRNPQSFQWTP 2
             RF S+ AER LPFF  LR    F WTP
Sbjct: 1023 SRFLSRAAERGLPFFKTLRGAGKFNWTP 1050


>gb|ABF95613.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1071

 Score =  107 bits (267), Expect = 2e-21
 Identities = 51/88 (57%), Positives = 61/88 (69%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           GM+LN EKCVFGV AGK LGF++S RGI+ N +K++A   M+PP SV+EVQ+  G I  L
Sbjct: 351 GMKLNPEKCVFGVHAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVREVQKLAGRIAAL 410

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF SK AER L FF  LR    F WTP
Sbjct: 411 SRFISKAAERGLSFFKTLRGAGKFNWTP 438


>emb|CAD39384.2| OSJNBb0016B03.14 [Oryza sativa Japonica Group]
          Length = 1323

 Score =  107 bits (266), Expect = 2e-21
 Identities = 49/88 (55%), Positives = 63/88 (71%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           G++LN EKC+FGV+AGK LGF++S RGI+ N +K++A   M+PP SV EV++ VG I  L
Sbjct: 553 GIKLNPEKCIFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVHEVKKLVGRIAAL 612

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF SK A+R LPFF  LR    F WTP
Sbjct: 613 SRFLSKAAKRGLPFFKTLRGAGKFNWTP 640


>gb|AAO37471.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|41393196|gb|AAS01919.1| putative polyprotein [Oryza
            sativa Japonica Group] gi|108709171|gb|ABF96966.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1535

 Score =  106 bits (265), Expect = 3e-21
 Identities = 50/88 (56%), Positives = 61/88 (69%)
 Frame = -2

Query: 265  GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
            G++LN EKCVF V+AGK LGF++S RGI+ N +K++A   M+PP SV EVQ+  G I  L
Sbjct: 894  GIKLNPEKCVFSVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVHEVQKLAGRIAAL 953

Query: 85   GRFCSKLAERSLPFFSALRNPQSFQWTP 2
             RF SK AER LPFF  LR    F WTP
Sbjct: 954  SRFLSKAAERGLPFFKTLRGAGKFNWTP 981


>gb|ABA97412.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1053

 Score =  106 bits (265), Expect = 3e-21
 Identities = 51/88 (57%), Positives = 62/88 (70%)
 Frame = -2

Query: 265 GMRLNLEKCVFGVKAGKFLGFMISSRGIDVNHDKVEASLHMEPPRSVKEVQRFVGSINYL 86
           GM+LN EKCVFGV+AGK LGF++S RGI+ N +K++A   M+PP SV+EVQ+    I  L
Sbjct: 710 GMKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVREVQKLACRIAAL 769

Query: 85  GRFCSKLAERSLPFFSALRNPQSFQWTP 2
            RF SK AER LPFF  LR    F WTP
Sbjct: 770 SRFLSKGAERGLPFFKTLRGTGKFTWTP 797