BLASTX nr result
ID: Rheum21_contig00038838
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00038838
(321 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA97602.2| retrotransposon protein, putative, Ty3-gypsy subc... 60 3e-07
gb|ABB47210.1| retrotransposon protein, putative, Ty3-gypsy subc... 60 4e-07
emb|CAD40750.1| OSJNBa0081G05.3 [Oryza sativa Japonica Group] 60 4e-07
emb|CAH66306.1| OSIGBa0135K14.3 [Oryza sativa Indica Group] gi|1... 60 4e-07
gb|AAM00991.1|AC090482_20 Putative retroelement [Oryza sativa Ja... 60 4e-07
gb|ABA93599.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 5e-07
gb|AAT73678.1| putative polyprotein [Oryza sativa Japonica Group] 59 5e-07
ref|XP_004309744.1| PREDICTED: uncharacterized protein LOC101303... 59 7e-07
gb|ABA93786.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 9e-07
gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-... 59 9e-07
gb|AAN08247.1| putative GAG-POL precursor [Oryza sativa Japonica... 59 9e-07
dbj|BAB19768.1| putative gypsy-type retrotransposon RIRE2 [Oryza... 59 9e-07
gb|ABG65980.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 9e-07
gb|ABA92927.2| retrotransposon protein, putative, Ty3-gypsy subc... 59 9e-07
gb|AAV43881.1| putative polyprotein [Oryza sativa Japonica Group] 59 9e-07
gb|AAU10736.1| putative polyprotein [Oryza sativa Japonica Group... 59 9e-07
gb|AAQ56331.1| putative polyprotein [Oryza sativa Japonica Group] 59 9e-07
emb|CAE02456.1| OSJNBa0042D13.9 [Oryza sativa Japonica Group] 59 9e-07
dbj|BAA84457.1| GAG-POL precursor [Oryza sativa Japonica Group] 58 1e-06
dbj|BAB39950.1| putative polyprotein [Oryza sativa Japonica Group] 58 1e-06
>gb|ABA97602.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 721
Score = 60.1 bits (144), Expect = 3e-07
Identities = 28/99 (28%), Positives = 55/99 (55%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S+ +L D FIA+F +R ++ + Q+ GE+L Y++RF+ + ++ D + +
Sbjct: 357 SWAELRDHFIANFQGTFERPGTQFDLYNLSQKSGESLRDYIRRFSEQRNKISDITDDVII 416
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEE 302
AF +G+ + +K P+T ++ EKAN + +AE+
Sbjct: 417 AAFTKGICHEDLVGKFGRKPPKTVKQMFEKANRYAKAED 455
>gb|ABB47210.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 59.7 bits (143), Expect = 4e-07
Identities = 29/100 (29%), Positives = 54/100 (54%)
Frame = +3
Query: 3 ESFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIA 182
ES+ +L D FIA+F +R ++ + Q+ GE+L Y++RF+ + ++ D + +
Sbjct: 498 ESWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVI 557
Query: 183 RMAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEE 302
AF +G+ + +K P T + EKAN + +AE+
Sbjct: 558 IAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAED 597
>emb|CAD40750.1| OSJNBa0081G05.3 [Oryza sativa Japonica Group]
Length = 555
Score = 59.7 bits (143), Expect = 4e-07
Identities = 32/102 (31%), Positives = 53/102 (51%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S++QL D+F+ +F + K Q +L ++QR GE++ Y++RF+ QV D E
Sbjct: 325 SWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDITEASVI 384
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEELSR 311
A + GL +++ K P+T LL + R EE S+
Sbjct: 385 NAALAGLVEGELTRNIANKEPQTLEHLLRIIDRFARGEEDSK 426
>emb|CAH66306.1| OSIGBa0135K14.3 [Oryza sativa Indica Group]
gi|116309231|emb|CAH66321.1| OSIGBa0150M16.4 [Oryza
sativa Indica Group]
Length = 555
Score = 59.7 bits (143), Expect = 4e-07
Identities = 32/102 (31%), Positives = 53/102 (51%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S++QL D+F+ +F + K Q +L ++QR GE++ Y++RF+ QV D E
Sbjct: 325 SWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDITEASVI 384
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEELSR 311
A + GL +++ K P+T LL + R EE S+
Sbjct: 385 NAALAGLVEGELTRNIANKEPQTLEHLLRIIDRFARGEEDSK 426
>gb|AAM00991.1|AC090482_20 Putative retroelement [Oryza sativa Japonica Group]
Length = 2017
Score = 59.7 bits (143), Expect = 4e-07
Identities = 29/100 (29%), Positives = 54/100 (54%)
Frame = +3
Query: 3 ESFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIA 182
ES+ +L D FIA+F +R ++ + Q+ GE+L Y++RF+ + ++ D + +
Sbjct: 498 ESWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVI 557
Query: 183 RMAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEE 302
AF +G+ + +K P T + EKAN + +AE+
Sbjct: 558 IAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAED 597
>gb|ABA93599.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1912
Score = 59.3 bits (142), Expect = 5e-07
Identities = 29/99 (29%), Positives = 54/99 (54%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S+ +L D FIA+F +R ++ + Q+ GE+L Y++RF+ + ++ D + +
Sbjct: 495 SWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVII 554
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEE 302
AF +G+ + +K P T +LEKAN + +AE+
Sbjct: 555 AAFTKGIRHEELVGKFGRKPPRTVKLMLEKANEYAKAED 593
>gb|AAT73678.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1992
Score = 59.3 bits (142), Expect = 5e-07
Identities = 29/103 (28%), Positives = 54/103 (52%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S+ +L D FIA+F +R ++ + Q+ GE+L Y++RF+ + ++ D + +
Sbjct: 492 SWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVII 551
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEELSRG 314
AF +G+ + +K P T + EKAN + +AE+ G
Sbjct: 552 AAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAEDAQSG 594
>ref|XP_004309744.1| PREDICTED: uncharacterized protein LOC101303383 [Fragaria vesca
subsp. vesca]
Length = 268
Score = 58.9 bits (141), Expect = 7e-07
Identities = 32/99 (32%), Positives = 52/99 (52%)
Frame = +3
Query: 3 ESFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIA 182
+SF QL D F+ F + + ++ +KQ GE L +V R+ +V FD+K+A
Sbjct: 23 DSFMQLADRFVNRF-ILRTDGQSTNQLFKVKQGHGEGLKAFVNRWQGATAKVRSFDKKVA 81
Query: 183 RMAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAE 299
AF+Q L F ++V + P Y +L+E A H +A+
Sbjct: 82 EEAFVQALLPGKFLYAVKIENPRGYDELMEMAIRHAQAD 120
>gb|ABA93786.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1498
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/99 (28%), Positives = 53/99 (53%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S+ +L D FIA+F +R ++ Q+ GE+L Y++RF+ + ++ D + +
Sbjct: 441 SWAELRDHFIANFQGTFERPDTQFDLYNFVQKSGESLRDYIRRFSEQRNKISDITDNVII 500
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEE 302
AF +G+ + +K P T ++ EKAN + +AE+
Sbjct: 501 AAFTKGILHEDLVGKFGRKPPRTVKQMFEKANEYAKAED 539
>gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1587
Score = 58.5 bits (140), Expect = 9e-07
Identities = 32/102 (31%), Positives = 52/102 (50%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S++QL D+F+ +F + K Q +L ++QR GE++ Y++RF+ QV D E
Sbjct: 357 SWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDITEASVI 416
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEELSR 311
A + GL ++ K P+T LL + R EE S+
Sbjct: 417 NAALAGLLEGELTRKIANKEPQTLEHLLRIIDGFARGEEDSK 458
>gb|AAN08247.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1696
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/99 (28%), Positives = 53/99 (53%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S+ +L D FIA+F +R ++ + Q+ GE+L Y++RF+ + ++ D + +
Sbjct: 450 SWAELRDYFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVII 509
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEE 302
AF +G+ + +K P T + EKAN + +AE+
Sbjct: 510 AAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAED 548
>dbj|BAB19768.1| putative gypsy-type retrotransposon RIRE2 [Oryza sativa Japonica
Group]
Length = 983
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/99 (28%), Positives = 55/99 (55%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S+ +L D FIA+F +R ++ + Q+ GE+L Y++RF+ + ++ D + +
Sbjct: 499 SWAELRDHFIANFQGTFERPGTQFDLYNVVQKSGESLRDYIRRFSKQRNKISDITDDVII 558
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEE 302
AF +G+ + +K P+T ++ EKAN + +AE+
Sbjct: 559 AAFTKGIRHEDLVGKFGRKPPKTVKQMFEKANEYAKAED 597
>gb|ABG65980.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 975
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/99 (28%), Positives = 53/99 (53%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S+ +L D FIA+F +R ++ + Q+ GE+L Y++RF+ + ++ D + +
Sbjct: 492 SWAELRDYFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVII 551
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEE 302
AF +G+ + +K P T + EKAN + +AE+
Sbjct: 552 AAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAED 590
>gb|ABA92927.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1590
Score = 58.5 bits (140), Expect = 9e-07
Identities = 32/102 (31%), Positives = 52/102 (50%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S++QL D+F+ +F + K Q +L ++QR GE++ Y++RF+ QV D E
Sbjct: 357 SWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDITEASVI 416
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEELSR 311
A + GL ++ K P+T LL + R EE S+
Sbjct: 417 NAALAGLLEGELTRKIANKEPQTLEHLLRIIDGFARGEEDSK 458
>gb|AAV43881.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1551
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/99 (28%), Positives = 55/99 (55%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S+ +L D FIA+F +R ++ + Q+ GE+L Y++RF+ + ++ D + +
Sbjct: 481 SWAELRDHFIANFQGTFERPGTQFDLYNIIQKSGESLRDYIRRFSEQRNKISDITDNVII 540
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEE 302
AF +G+ + +K P+T ++ EKAN + +AE+
Sbjct: 541 AAFTKGIRHEDLVGKFGRKPPKTVKQMFEKANEYAKAED 579
>gb|AAU10736.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353374|gb|AAU43942.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1995
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/99 (28%), Positives = 53/99 (53%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S+ +L D FIA+F +R ++ + Q+ GE+L Y++RF+ + ++ D + +
Sbjct: 497 SWAELRDHFIANFQGTFERPSTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVII 556
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEE 302
AF +G+ + +K P T + EKAN + +AE+
Sbjct: 557 AAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAED 595
>gb|AAQ56331.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1392
Score = 58.5 bits (140), Expect = 9e-07
Identities = 33/102 (32%), Positives = 51/102 (50%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S++QL D+F+ +F K K Q +L ++QR GE++ Y++RF+ QV D E
Sbjct: 308 SWEQLRDVFVLNFRGTYKEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDITEASVI 367
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEELSR 311
A GL ++ K P+T LL + R EE S+
Sbjct: 368 NAASAGLLEGELTRKITNKEPQTLEHLLRIIDGFARGEEDSK 409
>emb|CAE02456.1| OSJNBa0042D13.9 [Oryza sativa Japonica Group]
Length = 303
Score = 58.5 bits (140), Expect = 9e-07
Identities = 32/102 (31%), Positives = 52/102 (50%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S++QL D+F+ +F + K Q +L ++QR GE++ Y++RF+ QV D E
Sbjct: 124 SWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDITEASVI 183
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEELSR 311
A + GL ++ K P+T LL + R EE S+
Sbjct: 184 NAALAGLLEGELTKKIANKEPQTLEHLLRIIDGFARGEEDSK 225
>dbj|BAA84457.1| GAG-POL precursor [Oryza sativa Japonica Group]
Length = 983
Score = 58.2 bits (139), Expect = 1e-06
Identities = 28/99 (28%), Positives = 54/99 (54%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S+ +L D FIA+F +R ++ + Q+ GE+L Y++RF+ + ++ D + +
Sbjct: 500 SWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVII 559
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEE 302
AF +G+ + +K P+T + EKAN + +AE+
Sbjct: 560 AAFTKGIRHEELVGKFGRKPPKTVKLMFEKANEYAKAED 598
>dbj|BAB39950.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1579
Score = 58.2 bits (139), Expect = 1e-06
Identities = 32/102 (31%), Positives = 52/102 (50%)
Frame = +3
Query: 6 SFKQLEDLFIAHFGSAQKRKKGMQEILTMKQRDGENLAGYVKRFTSEVVQVHDFDEKIAR 185
S++QL D+F+ +F + K Q +L ++QR GE++ Y++RF+ QV D E
Sbjct: 124 SWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDITEASVI 183
Query: 186 MAFIQGLANSAFKFSVSKKAPETYMKLLEKANTHIRAEELSR 311
A GL ++ K P+T +LL + R EE S+
Sbjct: 184 NAASAGLLEGELTRKIANKEPQTLKQLLRIIDGFARGEEDSK 225