BLASTX nr result
ID: Rheum21_contig00038457
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00038457
(260 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002519596.1| conserved hypothetical protein [Ricinus comm... 107 2e-21
ref|XP_006598549.1| PREDICTED: uncharacterized protein LOC100803... 64 3e-08
ref|XP_006607055.1| PREDICTED: uncharacterized protein LOC100778... 63 4e-08
ref|XP_006607002.1| PREDICTED: uncharacterized protein LOC100788... 63 4e-08
ref|XP_006603400.1| PREDICTED: uncharacterized protein LOC102659... 63 4e-08
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664... 63 4e-08
gb|AAD17351.1| contains similarity to retrovirus-related polypro... 63 5e-08
ref|XP_006605097.1| PREDICTED: uncharacterized protein LOC100803... 61 2e-07
ref|XP_006388324.1| hypothetical protein POPTR_0229s00250g [Popu... 61 2e-07
gb|ADB85432.1| putative retrotransposon protein [Phyllostachys e... 61 2e-07
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] 60 2e-07
ref|XP_006575889.1| PREDICTED: uncharacterized protein LOC102669... 60 4e-07
gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum] 60 4e-07
emb|CAN68499.1| hypothetical protein VITISV_041099 [Vitis vinifera] 59 9e-07
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 58 1e-06
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum] 58 1e-06
emb|CAN73690.1| hypothetical protein VITISV_034834 [Vitis vinifera] 58 1e-06
ref|XP_006575965.1| PREDICTED: uncharacterized protein LOC102669... 58 2e-06
ref|XP_006371238.1| hypothetical protein POPTR_0019s07190g, part... 57 2e-06
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 57 2e-06
>ref|XP_002519596.1| conserved hypothetical protein [Ricinus communis]
gi|223541228|gb|EEF42782.1| conserved hypothetical
protein [Ricinus communis]
Length = 177
Score = 107 bits (267), Expect = 2e-21
Identities = 54/81 (66%), Positives = 61/81 (75%)
Frame = +3
Query: 6 DEEAYTCEATALHEGTALSLVTRRLLTVKEATLVDQCENLFHTRCLVKTTSLSVIIDGGS 185
D+E Y C L+EGT LSLV R LTVK+A+ DQ ENLFHTRCLV T+SLSVIID GS
Sbjct: 85 DKEPYACGPPELNEGTPLSLVAHRALTVKDASAGDQRENLFHTRCLVGTSSLSVIIDSGS 144
Query: 186 YCNIINEKVVTHFNLQTTPHP 248
CNI+NEKVV NL T+PHP
Sbjct: 145 CCNILNEKVVRVLNLPTSPHP 165
>ref|XP_006598549.1| PREDICTED: uncharacterized protein LOC100803523 [Glycine max]
Length = 459
Score = 63.5 bits (153), Expect = 3e-08
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +3
Query: 63 LVTRRLLTVKEATLVD-QCENLFHTRCLVKTTSLSVIIDGGSYCNIINEKVVTHFNLQTT 239
L+ RRLL + L D Q EN+FHTRC++ S+I+DGGS N+ + ++V++ NL+T
Sbjct: 366 LMVRRLLGNQMHPLDDNQRENIFHTRCIINGKLCSLIVDGGSCTNVASSRLVSNLNLETK 425
Query: 240 PHP*PY 257
PHP PY
Sbjct: 426 PHPRPY 431
>ref|XP_006607055.1| PREDICTED: uncharacterized protein LOC100778333, partial [Glycine
max]
Length = 560
Score = 63.2 bits (152), Expect = 4e-08
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +3
Query: 63 LVTRRLLTVKEATLVD-QCENLFHTRCLVKTTSLSVIIDGGSYCNIINEKVVTHFNLQTT 239
L+ RRLL + L D Q EN+FHTRC++ S+I+DGGS N+ + +VT NL+T
Sbjct: 365 LMVRRLLGNQMQPLDDNQRENIFHTRCVINGKLCSLIVDGGSCTNVASSTLVTKLNLETK 424
Query: 240 PHP*PY 257
PHP PY
Sbjct: 425 PHPTPY 430
>ref|XP_006607002.1| PREDICTED: uncharacterized protein LOC100788838 [Glycine max]
Length = 519
Score = 63.2 bits (152), Expect = 4e-08
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +3
Query: 63 LVTRRLLTVKEATLVD-QCENLFHTRCLVKTTSLSVIIDGGSYCNIINEKVVTHFNLQTT 239
L+ RRLL + L D Q EN+FHTRC++ S+I+DGGS N+ + +VT NL+T
Sbjct: 366 LMVRRLLGNQMQPLDDNQRENIFHTRCVINGKLCSLIVDGGSCTNVASSTLVTKLNLETK 425
Query: 240 PHP*PY 257
PHP PY
Sbjct: 426 PHPRPY 431
>ref|XP_006603400.1| PREDICTED: uncharacterized protein LOC102659640 [Glycine max]
Length = 594
Score = 63.2 bits (152), Expect = 4e-08
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +3
Query: 63 LVTRRLLTVKEATLVD-QCENLFHTRCLVKTTSLSVIIDGGSYCNIINEKVVTHFNLQTT 239
L+ RRLL + L D Q EN+FHTRC++ S+I+DGGS N+ + +VT NL+T
Sbjct: 366 LMVRRLLGNQMQPLDDNQRENIFHTRCVINGKLCSLIVDGGSCTNVASSTLVTKLNLETK 425
Query: 240 PHP*PY 257
PHP PY
Sbjct: 426 PHPRPY 431
>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
Length = 1176
Score = 63.2 bits (152), Expect = 4e-08
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +3
Query: 63 LVTRRLLTVKEATLVD-QCENLFHTRCLVKTTSLSVIIDGGSYCNIINEKVVTHFNLQTT 239
L+ RRLL + L D Q EN+FHTRC++ S+I+DGGS N+ + +VT NL+T
Sbjct: 366 LMVRRLLGNQMQPLDDNQRENIFHTRCVINGKLCSLIVDGGSCTNVASSTLVTKLNLETK 425
Query: 240 PHP*PY 257
PHP PY
Sbjct: 426 PHPRPY 431
>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
putative polyprotein [Arabidopsis thaliana]
Length = 1138
Score = 62.8 bits (151), Expect = 5e-08
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +3
Query: 63 LVTRRLLTV-KEATLVDQCENLFHTRCLVKTTSLSVIIDGGSYCNIINEKVVTHFNLQTT 239
LVT R+L+V +A Q ENLFHTRCL+K S+IIDGGS N+ +E +V L+
Sbjct: 328 LVTMRVLSVLNKAEEQAQRENLFHTRCLIKGKVCSLIIDGGSCTNVASETMVQKLGLEEF 387
Query: 240 PHP*PY 257
PHP PY
Sbjct: 388 PHPKPY 393
>ref|XP_006605097.1| PREDICTED: uncharacterized protein LOC100803456 [Glycine max]
Length = 732
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/67 (43%), Positives = 43/67 (64%)
Frame = +3
Query: 57 LSLVTRRLLTVKEATLVDQCENLFHTRCLVKTTSLSVIIDGGSYCNIINEKVVTHFNLQT 236
L +V R L + + + Q EN+FHT CL++ S+IIDGGS N+++ ++V NL+T
Sbjct: 225 LFIVRRILGGIAKKSEESQRENIFHTTCLIQGRVCSLIIDGGSCTNVVSARLVKKMNLET 284
Query: 237 TPHP*PY 257
PHP PY
Sbjct: 285 KPHPRPY 291
>ref|XP_006388324.1| hypothetical protein POPTR_0229s00250g [Populus trichocarpa]
gi|550310003|gb|ERP47238.1| hypothetical protein
POPTR_0229s00250g [Populus trichocarpa]
Length = 315
Score = 60.8 bits (146), Expect = 2e-07
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = +3
Query: 6 DEEAYTCEATALHEGT-----ALSLVTRRLLTVKEATLVDQCENLFHTRCLVKTTSLSVI 170
DE AYT + + G + SLV RLL + T Q N+F TRC V VI
Sbjct: 215 DETAYTYDKNEIIRGDDGELLSCSLVVHRLLLAPKQTDQSQHHNIFRTRCTVNRKVCDVI 274
Query: 171 IDGGSYCNIINEKVVTHFNLQTTPHP*PY 257
ID GS NI+++ +VT L+T HP PY
Sbjct: 275 IDSGSSENIVSKNMVTKLGLKTEKHPSPY 303
>gb|ADB85432.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 870
Score = 60.8 bits (146), Expect = 2e-07
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +3
Query: 27 EATALHEGTALSLVTRRLLTVK-EATLVDQCENLFHTRCLVKTTSLSVIIDGGSYCNIIN 203
+ A+ G +SLV +R+L+ + E +Q NLF TR LVK + VIIDGGS N+ +
Sbjct: 432 QVAAVDTGNHMSLVAQRVLSAQVERAEQNQRHNLFQTRFLVKDRACRVIIDGGSCNNLAS 491
Query: 204 EKVVTHFNLQTTPHP*PY 257
++V F L T PHP PY
Sbjct: 492 SEMVKKFGLATQPHPRPY 509
>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
Length = 1173
Score = 60.5 bits (145), Expect = 2e-07
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +3
Query: 21 TCEATALHEGTALSLVTRRLLT--VKEATLVDQCENLFHTRCLVKTTSLSVIIDGGSYCN 194
+C+ + SLV RR L+ VK+ + Q EN+FHTRC + S+IIDGGS N
Sbjct: 310 SCDDNVEYPVEGESLVARRALSAQVKKDDMEQQRENIFHTRCHINNKVCSMIIDGGSCAN 369
Query: 195 IINEKVVTHFNLQTTPHP*PY 257
+ + +V NL T HP PY
Sbjct: 370 VASTTLVEKLNLPTLKHPRPY 390
>ref|XP_006575889.1| PREDICTED: uncharacterized protein LOC102669193 [Glycine max]
Length = 488
Score = 59.7 bits (143), Expect = 4e-07
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +3
Query: 63 LVTRRLLTVKEATLVDQC-ENLFHTRCLVKTTSLSVIIDGGSYCNIINEKVVTHFNLQTT 239
L+ RRLL + L D EN+FHTRC + S+I+DGGS N+ + +VT NL+T
Sbjct: 366 LMVRRLLGNQMQPLDDNHKENIFHTRCAINGKLCSLIVDGGSCTNVASSILVTKLNLETK 425
Query: 240 PHP*PY 257
PHP PY
Sbjct: 426 PHPRPY 431
>gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 572
Score = 59.7 bits (143), Expect = 4e-07
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = +3
Query: 63 LVTRRLL--TVKEATLVDQCENLFHTRCLVKTTSLSVIIDGGSYCNIINEKVVTHFNLQT 236
L+ RR+L +KE Q ENLFHTRC V+ S+IIDGGS N+ + ++V+ L+T
Sbjct: 344 LMVRRMLGSQIKEED-TGQRENLFHTRCFVQGKVCSLIIDGGSCTNVASTRLVSKLKLET 402
Query: 237 TPHP*PY 257
PHP PY
Sbjct: 403 KPHPKPY 409
>emb|CAN68499.1| hypothetical protein VITISV_041099 [Vitis vinifera]
Length = 1115
Score = 58.5 bits (140), Expect = 9e-07
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 24 CEATALHEGTALSLVTRRLLT--VKEATLVDQCENLFHTRCLVKTTSLSVIIDGGSYCNI 197
C+ + SLV RR L+ VKE + Q EN FHTRC + S+IIDGGS N+
Sbjct: 291 CDDNVEYPXEGESLVARRALSAQVKEDDMEQQRENXFHTRCHINNKVCSMIIDGGSCTNV 350
Query: 198 INEKVVTHFNLQTTPHP*PY 257
+ +V NL T +P PY
Sbjct: 351 ASTTLVEKLNLPTLKYPRPY 370
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 58.2 bits (139), Expect = 1e-06
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 DEEAYTCEATALHEGTALSLVTRRLLTVK-EATLVDQCENLFHTRCLVKTTSLSVIIDGG 182
DEE EA +E SLV +R+L+ + E +Q LF T+C++K S VIIDGG
Sbjct: 454 DEEHIRAEAAEHYE----SLVVQRVLSAQMERAEQNQLHTLFQTKCVIKERSCHVIIDGG 509
Query: 183 SYCNIINEKVVTHFNLQTTPHP*PY 257
S N+ + ++V L T PHP PY
Sbjct: 510 SCNNLASAEMVEKLALSTQPHPQPY 534
>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 1004
Score = 58.2 bits (139), Expect = 1e-06
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 63 LVTRRLL--TVKEATLVDQCENLFHTRCLVKTTSLSVIIDGGSYCNIINEKVVTHFNLQT 236
L+ RR+L +KE Q ENLFH RC V+ S+IIDGGS N+ + ++V+ L+T
Sbjct: 344 LMVRRMLGSQIKEED-TSQRENLFHIRCFVQGKVCSLIIDGGSCTNVASTRLVSRLKLET 402
Query: 237 TPHP*PY 257
PHP PY
Sbjct: 403 KPHPKPY 409
>emb|CAN73690.1| hypothetical protein VITISV_034834 [Vitis vinifera]
Length = 818
Score = 58.2 bits (139), Expect = 1e-06
Identities = 34/85 (40%), Positives = 43/85 (50%)
Frame = +3
Query: 3 DDEEAYTCEATALHEGTALSLVTRRLLTVKEATLVDQCENLFHTRCLVKTTSLSVIIDGG 182
DD Y E +L ALS K+ L Q EN+FHTRC + S+IIDGG
Sbjct: 381 DDNVEYPVEGESLVARCALSA------QAKKDDLEQQRENIFHTRCHINNKVCSMIIDGG 434
Query: 183 SYCNIINEKVVTHFNLQTTPHP*PY 257
S N+ + +V + NL T HP PY
Sbjct: 435 SCTNVASTTLVENLNLPTLKHPRPY 459
>ref|XP_006575965.1| PREDICTED: uncharacterized protein LOC102669237, partial [Glycine
max]
Length = 1520
Score = 57.8 bits (138), Expect = 2e-06
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 63 LVTRRLLTVKEATLVD-QCENLFHTRCLVKTTSLSVIIDGGSYCNIINEKVVTHFNLQTT 239
L+ RRLL + L Q EN+FHTRC + + S+I+D GS CN + ++V+ NL
Sbjct: 807 LMVRRLLGGQSCDLSQSQRENIFHTRCKILDKTCSLIVDSGSCCNCCSTRLVSKLNLTII 866
Query: 240 PHP*PY 257
PHP PY
Sbjct: 867 PHPKPY 872
>ref|XP_006371238.1| hypothetical protein POPTR_0019s07190g, partial [Populus
trichocarpa] gi|550316939|gb|ERP49035.1| hypothetical
protein POPTR_0019s07190g, partial [Populus trichocarpa]
Length = 185
Score = 57.4 bits (137), Expect = 2e-06
Identities = 29/77 (37%), Positives = 42/77 (54%)
Frame = +3
Query: 27 EATALHEGTALSLVTRRLLTVKEATLVDQCENLFHTRCLVKTTSLSVIIDGGSYCNIINE 206
E L EG AL + + +KE + Q EN+ HT+C ++ S+IIDGGS N+ ++
Sbjct: 106 EIVYLVEGKALVIRRALNIQIKEDDIDQQGENIVHTQCHIQNKVCSIIIDGGSCANVASD 165
Query: 207 KVVTHFNLQTTPHP*PY 257
+V NL HP PY
Sbjct: 166 SLVKKLNLSCVKHPRPY 182
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 57.4 bits (137), Expect = 2e-06
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 DEEAYTCEATALHEGTALSLVTRRLLTVK-EATLVDQCENLFHTRCLVKTTSLSVIIDGG 182
DEE EA +E SLV +R+L+ + E +Q LF T+C++K S VIIDGG
Sbjct: 436 DEEHIKAEAAEHYE----SLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDGG 491
Query: 183 SYCNIINEKVVTHFNLQTTPHP*PY 257
S N+ + ++V L T PHP PY
Sbjct: 492 SCNNLASAEMVEKLALSTQPHPQPY 516