BLASTX nr result
ID: Rheum21_contig00038386
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00038386
(346 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 52 1e-11
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 51 1e-11
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 44 2e-09
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 47 5e-09
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 45 5e-08
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 46 7e-08
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 46 7e-08
ref|XP_006586426.1| PREDICTED: putative ribonuclease H protein A... 44 6e-07
ref|XP_004173733.1| PREDICTED: uncharacterized protein LOC101232... 45 1e-06
gb|ABD96948.1| hypothetical protein [Cleome spinosa] 45 5e-06
ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein A... 40 6e-06
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 40 7e-06
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 52.0 bits (123), Expect(2) = 1e-11
Identities = 21/63 (33%), Positives = 40/63 (63%)
Frame = +2
Query: 32 QKTPPSFFEPIAHKMTFKITGWVAKNL*YADRLELIKSVMYGIQSCWCNVILFPKKVLNK 211
QK ++P+ ++ + T W A++L +A RL+L+KSV+Y + W +V +FP + L K
Sbjct: 773 QKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVFIFPNQCLQK 832
Query: 212 VKR 220
+++
Sbjct: 833 LEQ 835
Score = 42.7 bits (99), Expect(2) = 1e-11
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 205 QQSQAILHSFLWSGMSSSKRSL-VACGTTCKPVHEGGIGLKQLHAWNK 345
Q+ + + ++FLWSG +S R ++ C P GG+GLK+L +WN+
Sbjct: 831 QKLEQMCNAFLWSGAPNSARGAKISWNIVCSPKEAGGLGLKRLSSWNR 878
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 51.2 bits (121), Expect(2) = 1e-11
Identities = 18/53 (33%), Positives = 34/53 (64%)
Frame = +2
Query: 59 PIAHKMTFKITGWVAKNL*YADRLELIKSVMYGIQSCWCNVILFPKKVLNKVK 217
P+ K+ +I W AK L YA R +L+K+V++G+Q+ W + + P K++ ++
Sbjct: 581 PLIEKVMARINSWTAKKLSYAGRAQLVKTVLFGVQALWAQLFIIPAKIIKLIE 633
Score = 43.5 bits (101), Expect(2) = 1e-11
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 214 QAILHSFLWSGMSS-SKRSLVACGTTCKPVHEGGIGLKQLHAWNK 345
+ + S+LWSG+ +K++L+A C P +EGG+GL L WN+
Sbjct: 633 EGLCRSYLWSGVGYVTKKALIAWDKVCSPKYEGGLGLINLKIWNR 677
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 44.3 bits (103), Expect(2) = 2e-09
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +2
Query: 59 PIAHKMTFKITGWVAKNL*YADRLELIKSVMYGIQSCWCNVILFPKKVLNKVKR 220
P+ ++ +I W K L +A RL+LI+SV+ IQ W + ++ PKKVL +++
Sbjct: 610 PLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDIEK 663
Score = 43.1 bits (100), Expect(2) = 2e-09
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 223 LHSFLWSGMSSSKRSL-VACGTTCKPVHEGGIGLKQLHAWNK 345
L FLW+G S + + VA C P EGG+G+K LH WNK
Sbjct: 665 LRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWNK 706
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 47.0 bits (110), Expect(2) = 5e-09
Identities = 20/60 (33%), Positives = 36/60 (60%)
Frame = +2
Query: 53 FEPIAHKMTFKITGWVAKNL*YADRLELIKSVMYGIQSCWCNVILFPKKVLNKVKRSSTR 232
+EP+ K+T + WV K L +A R++LI SV++G + W + L PK + +++ +R
Sbjct: 779 YEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSR 838
Score = 38.9 bits (89), Expect(2) = 5e-09
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 214 QAILHSFLWSG-MSSSKRSLVACGTTCKPVHEGGIGLKQLHAWNK 345
+++ FLWSG + +K V+ C P EGG+GL++L WNK
Sbjct: 833 ESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNK 877
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 45.4 bits (106), Expect(2) = 5e-08
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +2
Query: 47 SFFEPIAHKMTFKITGWVAKNL*YADRLELIKSVMYGIQSCWCNVILFPKKVLNKVKR 220
S + P+ K+ +IT W + L +A RL+LIKSV+ I + W +V PK L ++++
Sbjct: 931 SDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEK 988
Score = 37.0 bits (84), Expect(2) = 5e-08
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 205 QQSQAILHSFLWSGMS-SSKRSLVACGTTCKPVHEGGIGLKQLHAWNK 345
Q+ + + +FLWSG ++K++ +A CK EGG+GLK L N+
Sbjct: 984 QEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANE 1031
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 46.2 bits (108), Expect(2) = 7e-08
Identities = 18/55 (32%), Positives = 35/55 (63%)
Frame = +2
Query: 53 FEPIAHKMTFKITGWVAKNL*YADRLELIKSVMYGIQSCWCNVILFPKKVLNKVK 217
+ P+ K++ ++ WV+K L +A R +LI SV++G+ + W + L PK + K++
Sbjct: 639 YGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIE 693
Score = 35.8 bits (81), Expect(2) = 7e-08
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 214 QAILHSFLWSGM----SSSKRSLVACGTTCKPVHEGGIGLKQLHAWNK 345
+++ FLW+G SSK S V C C P EGG+G + WNK
Sbjct: 693 ESLCSKFLWAGSIDGRKSSKVSWVDC---CLPKSEGGLGFRSFGEWNK 737
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 46.2 bits (108), Expect(2) = 7e-08
Identities = 18/55 (32%), Positives = 35/55 (63%)
Frame = +2
Query: 53 FEPIAHKMTFKITGWVAKNL*YADRLELIKSVMYGIQSCWCNVILFPKKVLNKVK 217
+ P+ K++ ++ WV+K L +A R +LI SV++G+ + W + L PK + K++
Sbjct: 639 YGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIE 693
Score = 35.8 bits (81), Expect(2) = 7e-08
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 214 QAILHSFLWSGM----SSSKRSLVACGTTCKPVHEGGIGLKQLHAWNK 345
+++ FLW+G SSK S V C C P EGG+G + WNK
Sbjct: 693 ESLCSKFLWAGSIDGRKSSKVSWVDC---CLPKSEGGLGFRSFGEWNK 737
>ref|XP_006586426.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 192
Score = 43.5 bits (101), Expect(2) = 6e-07
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +2
Query: 71 KMTFKITGWVAKNL*YADRLELIKSVMYGIQSCWCNVILFPKKVLNKVKRS 223
K+T I GW K+L YA +LELI++V+ GI + W + P+ V++ + S
Sbjct: 72 KITGLIQGWSKKSLSYAGKLELIRAVIQGIVNFWMEIFSLPQSVMDWINAS 122
Score = 35.4 bits (80), Expect(2) = 6e-07
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 217 AILHSFLWSGMSSSK-RSLVACGTTCKPVHEGGIGLKQLHAWN 342
A +FLW K + LVA C P EGG+GL L WN
Sbjct: 121 ASCRNFLWGKADIGKNKPLVAWSVVCSPKKEGGLGLLNLKDWN 163
>ref|XP_004173733.1| PREDICTED: uncharacterized protein LOC101232446, partial [Cucumis
sativus]
Length = 382
Score = 45.4 bits (106), Expect(2) = 1e-06
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +2
Query: 56 EPIAHKMTFKITGWVAKNL*YADRLELIKSVMYGIQSCWCNVILFPKKV---LNKVKRS 223
+P+ ++T +I W A+ L +A RL+L++SV+ +Q W +V + P KV ++K+ RS
Sbjct: 54 DPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSLQVYWASVFMLPMKVHRDVDKILRS 112
Score = 32.7 bits (73), Expect(2) = 1e-06
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 220 ILHSFLWSGMSSSKRSL-VACGTTCKPVHEGGIGLKQLHAWN 342
IL S+LW G + VA C P EGG+ ++ +WN
Sbjct: 109 ILRSYLWRGKEEGRGGAKVAWDEVCLPFDEGGLAIRDGSSWN 150
>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
Length = 539
Score = 45.1 bits (105), Expect(2) = 5e-06
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +2
Query: 47 SFFEPIAHKMTFKITGWVAKNL*YADRLELIKSVMYGIQSCWCNVILFPKKVLNKVKR 220
S ++P+ ++ KI W + L YA RL+L+ +V+YG+ + W + + PK +V R
Sbjct: 231 SDYQPLLDRVKAKINSWTTRYLSYAGRLQLVGTVIYGMVNAWGMIFMLPKFFTKQVDR 288
Score = 30.8 bits (68), Expect(2) = 5e-06
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 205 QQSQAILHSFLWSGMSSSKRSLVACGTTCKPVHEGGIGLKQLHAWNK 345
+Q + FLW ++ + V+ T C+P EGG+GL+++ +N+
Sbjct: 284 KQVDRLCAGFLWGAGTTHR---VSWDTCCRPRKEGGLGLRKIAEFNQ 327
>ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 872
Score = 40.4 bits (93), Expect(2) = 6e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +2
Query: 53 FEPIAHKMTFKITGWVAKNL*YADRLELIKSVMYGIQSCWCNVILFPKKVLNKVKR 220
F+ I K+ K++ WV L A RL+LIKSV+Y + V +P +L KV+R
Sbjct: 270 FQAIVDKVRLKLSSWVGSFLSMAGRLQLIKSVIYSMFVYTFQVYEWPVSLLRKVER 325
Score = 35.0 bits (79), Expect(2) = 6e-06
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 229 SFLWSGMSSSKRS--LVACGTTCKPVHEGGIGLKQLHAWN 342
+FLWSG KR LV+ + C P+ EGG+GLK+L N
Sbjct: 329 NFLWSG-DIDKRGIPLVSWTSCCAPIDEGGLGLKKLDVLN 367
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 40.0 bits (92), Expect(2) = 7e-06
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +2
Query: 50 FFEPIAHKMTFKITGWVAKNL*YADRLELIKSVMYGIQSCWCNVILFPKKVLNKVKR 220
+F+ ++ KI W A+ L YA RL LI SV++ I + W P+K + ++ +
Sbjct: 1064 YFQSSREQLKKKIGSWTARFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIREIDK 1120
Score = 35.0 bits (79), Expect(2) = 7e-06
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 229 SFLWSGMS-SSKRSLVACGTTCKPVHEGGIGLKQLHAWN 342
+FLWSG +S ++ VA CKP EGG+GL+ + N
Sbjct: 1124 TFLWSGPDLNSHKAKVAWDDVCKPKKEGGLGLRSIKEAN 1162