BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00038200
         (266 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...    98   1e-18
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...    94   1e-17
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...    94   1e-17
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]            94   1e-17
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    93   4e-17
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        91   2e-16
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694...    90   4e-16
ref|XP_004252692.1| PREDICTED: uncharacterized protein LOC101261...    89   5e-16
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...    89   5e-16
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...    89   5e-16
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    87   2e-15
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    87   2e-15
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...    85   9e-15
ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256...    84   2e-14
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                84   2e-14
emb|CAD22562.1| reverse transcriptase [Brassica rapa subsp. olei...    84   2e-14
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...    83   3e-14
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    83   3e-14
ref|XP_006599894.1| PREDICTED: uncharacterized protein LOC102668...    83   4e-14
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    83   4e-14

>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 42/87 (48%), Positives = 63/87 (72%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PIACC+   KII KIL  +++ +L+ V++ +QSAF+ GR I  N++++ ELV+ Y R GI
Sbjct: 199 PIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGI 258

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAAMI 4
            PRCM+ +D+QKAY+ V W F+K  M+
Sbjct: 259 SPRCMVKIDLQKAYNSVEWPFIKHLML 285


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 1072

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 43/86 (50%), Positives = 62/86 (72%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PI+C NT  K+I K+L  +++ LL  VI  SQSAF+PGRS+  NV++A E+V GY+R  I
Sbjct: 385 PISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNI 444

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAAM 7
            PR M+ +D++KA+D V W F+ AA+
Sbjct: 445 SPRGMLKVDLKKAFDSVKWEFVTAAL 470


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 39/86 (45%), Positives = 62/86 (72%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PIACC    KII K+L ++++ ++ +V+  +QS FIPGR I  N+++A EL+RGY R  +
Sbjct: 516 PIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHM 575

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAAM 7
            PRC++ +D++KAYD V W+FL+  +
Sbjct: 576 SPRCIMKVDIRKAYDSVEWSFLETLL 601


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 43/86 (50%), Positives = 62/86 (72%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PI+C NT  K+I K+L  +++ LL  VI  SQSAF+PGRS+  NV++A E+V GY+R  I
Sbjct: 385 PISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNI 444

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAAM 7
            PR M+ +D++KA+D V W F+ AA+
Sbjct: 445 SPRGMLKVDLKKAFDSVKWEFVTAAL 470


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 40/86 (46%), Positives = 63/86 (73%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PIACC+T  KII KIL  +++ ++ +V+  +Q+ FIP R I  N+++A EL+RGY+R  +
Sbjct: 519 PIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHV 578

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAAM 7
            PRC+I +D++KAYD V W FL++ +
Sbjct: 579 SPRCVIKVDIRKAYDSVEWVFLESML 604


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 41/86 (47%), Positives = 64/86 (74%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PI+C NT  K+I ++L D+++ LL  VI+ +QSAF+PGRS+  NV++A +LV GY+ + I
Sbjct: 525 PISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNI 584

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAAM 7
            PR M+ +D++KA+D V W F+ AA+
Sbjct: 585 SPRGMLKVDLKKAFDSVRWEFVIAAL 610


>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
           putative protein [Arabidopsis thaliana]
          Length = 1141

 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 41/87 (47%), Positives = 63/87 (72%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PI+C NT  K+I ++L D+++ LL  VI+PSQSAF+PGR +  NV++A E+V GY+   I
Sbjct: 503 PISCMNTLYKVIARLLTDRLQKLLSCVISPSQSAFLPGRLLAENVLLATEMVHGYNWRNI 562

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAAMI 4
             R M+ +D++KA+D V W F+ AA++
Sbjct: 563 SLRGMLKVDLRKAFDSVRWEFIIAALL 589


>ref|XP_004252692.1| PREDICTED: uncharacterized protein LOC101261795 [Solanum
           lycopersicum]
          Length = 413

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 39/87 (44%), Positives = 56/87 (64%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PIACC    KII K++  ++  ++  VI  SQ+ FIPGR I  N+++A ELV+ Y R  I
Sbjct: 317 PIACCTVLYKIISKVITRRMHDVIHDVICESQAGFIPGRKIADNIILAHELVKTYTRKNI 376

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAAMI 4
            PR ++ +D+ KAYD V W FL+  M+
Sbjct: 377 SPRIILKIDLHKAYDSVEWPFLEQVMV 403


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 40/85 (47%), Positives = 62/85 (72%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PI+C NT  K+I K+L  +++ LL++VI+PSQSAF+PGR +  NV++A E+V GY+   I
Sbjct: 526 PISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNI 585

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAA 10
             R M+ +D++KA+D V W F+ +A
Sbjct: 586 SSRGMLKVDLRKAFDSVRWDFIISA 610


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 40/85 (47%), Positives = 62/85 (72%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PI+C NT  K+I K+L  +++ LL++VI+PSQSAF+PGR +  NV++A E+V GY+   I
Sbjct: 526 PISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNI 585

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAA 10
             R M+ +D++KA+D V W F+ +A
Sbjct: 586 SSRGMLKVDLRKAFDSVRWDFIISA 610


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 39/86 (45%), Positives = 59/86 (68%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PI+C NT  K+I K+L D+++  L   I+ SQSAF+PGR    NV++A ELV GY++  I
Sbjct: 422 PISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNI 481

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAAM 7
            P  M+ +D++KA+D V W F+ +A+
Sbjct: 482 APSSMLKVDLRKAFDSVRWDFIVSAL 507


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 38/82 (46%), Positives = 57/82 (69%)
 Frame = -3

Query: 264  PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
            PI+CCN   K I K+L ++++ LL + IAP+QSAFI  R +  N+++A ELV+ Y + G+
Sbjct: 797  PISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKDGL 856

Query: 84   YPRCMINLDVQKAYDCVSWTFL 19
             PRC + +D+ KA+D V W FL
Sbjct: 857  SPRCAMKIDLSKAFDSVQWPFL 878


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
           subsp. vesca]
          Length = 958

 Score = 85.1 bits (209), Expect = 9e-15
 Identities = 38/86 (44%), Positives = 56/86 (65%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PI+CCNT  KII K+L ++++  L  ++ PSQS FIPGR I  N+++AQE++  Y +   
Sbjct: 352 PISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNILLAQEIICDYHKADG 411

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAAM 7
            PRC   +D+ KA D V W F+ A +
Sbjct: 412 QPRCTFMVDMMKANDTVEWDFIIATL 437


>ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256917 [Solanum
           lycopersicum]
          Length = 421

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 38/86 (44%), Positives = 52/86 (60%)
 Frame = -3

Query: 261 IACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGIY 82
           I CC    KII K++ +++  ++  VI  SQ  FI GR I  N+++A ELV  Y R  I 
Sbjct: 185 ITCCTVLYKIISKVITNRMHDVIHNVICDSQVGFILGRKISENILLAHELVNSYTRKNIS 244

Query: 81  PRCMINLDVQKAYDCVSWTFLKAAMI 4
           PR M+ +D+QK YD V W FLK  M+
Sbjct: 245 PRSMLKIDLQKVYDSVEWPFLKQVMV 270


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 36/87 (41%), Positives = 58/87 (66%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PI+CCN   K+I KI+ ++++ LL + IA +QSAF+  R +  N+++A ELV+ Y +  I
Sbjct: 178 PISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSI 237

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAAMI 4
             RC I +D+ KA+D V W+FL   ++
Sbjct: 238 SARCAIKIDISKAFDSVQWSFLTNTLV 264


>emb|CAD22562.1| reverse transcriptase [Brassica rapa subsp. oleifera]
          Length = 137

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 33/82 (40%), Positives = 59/82 (71%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PI+CCN   K+I KI+ ++++P+L   ++P+Q+AF+ GRS+  NV++A EL+R Y+++  
Sbjct: 5   PISCCNIVYKVISKIIANRLKPILRDCVSPNQAAFLKGRSLGENVLLASELIRDYNKSSC 64

Query: 84  YPRCMINLDVQKAYDCVSWTFL 19
               M+ +D++KA+D V W F+
Sbjct: 65  LRSSMLKVDIRKAFDTVCWDFV 86


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
           thaliana]
          Length = 1253

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 39/90 (43%), Positives = 65/90 (72%), Gaps = 4/90 (4%)
 Frame = -3

Query: 264 PIACCN----TALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYD 97
           PI+C +    T  K+I ++L ++++ LL +VI+P QSAF+PGR +  NV++A ELV+GY+
Sbjct: 474 PISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQGYN 533

Query: 96  RTGIYPRCMINLDVQKAYDCVSWTFLKAAM 7
           R  I PR M+ +D++KA+D + W F+ +A+
Sbjct: 534 RQNIDPRGMLKVDLRKAFDSIRWDFIISAL 563


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 35/87 (40%), Positives = 59/87 (67%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PI+CCN   K+I KI+ ++++ +L + IA +QSAFI  R +  N+++A ELV+ Y +  +
Sbjct: 49  PISCCNVLYKVISKIIANRLKRVLPQFIAGNQSAFIKDRLLIENLLLATELVKDYHKDSV 108

Query: 84  YPRCMINLDVQKAYDCVSWTFLKAAMI 4
             RC I +D+ KA+D V W+FL+  ++
Sbjct: 109 SERCAIKIDISKAFDSVQWSFLRNVLL 135


>ref|XP_006599894.1| PREDICTED: uncharacterized protein LOC102668020 [Glycine max]
          Length = 603

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 34/82 (41%), Positives = 55/82 (67%)
 Frame = -3

Query: 264 PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
           PI+CCN   KI+ KIL +++ P+L+ +I  +Q+AFI  + +  N+ + QE++R Y     
Sbjct: 339 PISCCNLLYKIVSKILANRIAPVLETIIGETQTAFIKNKKMMDNIFLIQEILRKYAWKRS 398

Query: 84  YPRCMINLDVQKAYDCVSWTFL 19
            PRC++ +D+ KAYD +SW FL
Sbjct: 399 SPRCLLKIDLHKAYDSISWEFL 420


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 36/82 (43%), Positives = 54/82 (65%)
 Frame = -3

Query: 264  PIACCNTALKIIPKILVDKVRPLLDKVIAPSQSAFIPGRSICHNVVVAQELVRGYDRTGI 85
            PI+CCN   K+I KIL ++++ LL   I  +QSAF+  R +  NV++A ELV+ Y +  +
Sbjct: 828  PISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESV 887

Query: 84   YPRCMINLDVQKAYDCVSWTFL 19
             PRC + +D+ KA+D V W FL
Sbjct: 888  TPRCAMKIDISKAFDSVQWQFL 909