BLASTX nr result
ID: Rheum21_contig00038159
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00038159
(489 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 46 4e-10
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ... 46 4e-10
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 44 4e-09
ref|XP_006470496.1| PREDICTED: uncharacterized protein LOC102617... 54 5e-09
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 45 5e-08
ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thalia... 43 1e-07
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 41 2e-07
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 42 2e-06
emb|CAB75484.1| putative protein [Arabidopsis thaliana] 45 2e-06
ref|XP_003629388.1| Cytochrome P450 [Medicago truncatula] gi|355... 43 2e-06
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 42 3e-06
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga... 56 4e-06
gb|AAK98741.1|AC090485_20 Hypothetical protein similar to putati... 40 5e-06
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 39 6e-06
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 45.8 bits (107), Expect(2) = 4e-10
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +3
Query: 15 TWLWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLC 146
T +W L I PK+K FLW+ S +L TTERL ++ SC C
Sbjct: 1426 TRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRC 1469
Score = 43.9 bits (102), Expect(2) = 4e-10
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 12/103 (11%)
Frame = +2
Query: 158 EDLNHLFFKCPFSLRSLELLQSLIGITFNIDLGNDFYTN------------MEFFHSRYK 301
E +NH F CPF+ + L S + N + NDF N M FH
Sbjct: 1474 ESINHALFTCPFATMAWRLSDS--SLIRNQLMSNDFEENISNILNFVQDTTMSDFHK--- 1528
Query: 302 NXXXXXXXXWTIWKVRNDLIFRKIPLDIQKTVNIAFISYKDWM 430
W IWK RN+++F K KTV A DW+
Sbjct: 1529 --LLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWL 1569
>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
reverse transcriptase [Arabidopsis thaliana]
gi|332641254|gb|AEE74775.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 484
Score = 45.8 bits (107), Expect(2) = 4e-10
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +3
Query: 15 TWLWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLC 146
T +W L I PK+K FLW+ S +L TTERL ++ SC C
Sbjct: 160 TRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRC 203
Score = 43.9 bits (102), Expect(2) = 4e-10
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 12/103 (11%)
Frame = +2
Query: 158 EDLNHLFFKCPFSLRSLELLQSLIGITFNIDLGNDFYTN------------MEFFHSRYK 301
E +NH F CPF+ + L S + N + NDF N M FH
Sbjct: 208 ESINHALFTCPFATMAWRLSDS--SLIRNQLMSNDFEENISNILNFVQDTTMSDFHK--- 262
Query: 302 NXXXXXXXXWTIWKVRNDLIFRKIPLDIQKTVNIAFISYKDWM 430
W IWK RN+++F K KTV A DW+
Sbjct: 263 --LLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWL 303
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 43.5 bits (101), Expect(2) = 4e-09
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +3
Query: 15 TWLWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLC 146
T +W L I PK+K FLW+ S +L TTERL ++ C C
Sbjct: 1200 TRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRC 1243
Score = 42.7 bits (99), Expect(2) = 4e-09
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 12/103 (11%)
Frame = +2
Query: 158 EDLNHLFFKCPFSLRSLELLQSLIGITFNIDLGNDFYTN------------MEFFHSRYK 301
E +NH F CPF+ + L S + N + NDF N M FH
Sbjct: 1248 ESINHALFTCPFATMAWWLSDS--SLIRNQLMSNDFEENISNILNFVQDTTMSDFHK--- 1302
Query: 302 NXXXXXXXXWTIWKVRNDLIFRKIPLDIQKTVNIAFISYKDWM 430
W IWK RN+++F K KTV A DW+
Sbjct: 1303 --LLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWL 1343
>ref|XP_006470496.1| PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
Length = 440
Score = 53.5 bits (127), Expect(2) = 5e-09
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = +3
Query: 3 PGFATW--LWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLC 146
P + W LW+LE+P K+K F+W+ +D LPTTE L + + +V +C+ C
Sbjct: 118 PSSSIWNQLWRLEVPSKVKHFMWRALTDVLPTTENLLKKYVEVPPACITC 167
Score = 32.3 bits (72), Expect(2) = 5e-09
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +2
Query: 158 EDLNHLFFKCPFSLRSLELLQSLIGITFNIDLGNDFYTNMEFFHSRY--KNXXXXXXXXW 331
E + H+ +CPF+ + S IG + G++ +E +RY + W
Sbjct: 172 ESICHILLQCPFARTCW--MTSSIGFFGD---GSNLLLWLEALFNRYSLEQTQLAVMICW 226
Query: 332 TIWKVRNDLIFRKIPLDIQKTVNIA 406
++W+ RND+++R +Q+ +N A
Sbjct: 227 SLWQNRNDMVWRGKTSGVQQLLNSA 251
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 45.1 bits (105), Expect(2) = 5e-08
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +2
Query: 158 EDLNHLFFKCPFSLRSLELLQSLIGITFNIDL-GNDFYTNMEFFH----SRYKNXXXXXX 322
ED+NHL F+C S E Q+ I + L N F N+E S K+
Sbjct: 547 EDVNHLLFQCRVSKEIWE--QAHIKLCPGDSLMSNSFNQNLESIQKLNQSARKDVSLFPF 604
Query: 323 XXWTIWKVRNDLIFRKIPLDIQKTVNIAFISYKDW 427
W IWK+RNDLIF I ++ A I + W
Sbjct: 605 IGWRIWKMRNDLIFNNKRWSIPDSIQKALIDQQQW 639
Score = 37.4 bits (85), Expect(2) = 5e-08
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 15 TWLWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLC 146
T +WK PPKIK F W+ ++LPT L R +C C
Sbjct: 499 TNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRC 542
>ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thaliana]
gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
thaliana] gi|7269807|emb|CAB79667.1| putative protein
[Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
putative reverse transcriptase/RNA-dependent DNA
polymerase [Arabidopsis thaliana]
gi|332660185|gb|AEE85585.1| ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 575
Score = 43.1 bits (100), Expect(2) = 1e-07
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 21 LWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLC 146
+WK + PKI+ FLWKC S+SLP L S+C+ C
Sbjct: 257 IWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRC 298
Score = 38.1 bits (87), Expect(2) = 1e-07
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Frame = +2
Query: 158 EDLNHLFFKCPFSLRSLELLQSLIGITFNIDLGNDFYTNMEFFHSR-------YKNXXXX 316
E +NHL FKC F+ + + S I I + + Y N+ + + K
Sbjct: 303 ETVNHLLFKCTFARLTWAI--SSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLV 360
Query: 317 XXXXWTIWKVRNDLIFRKIPLDIQKTVNIAFISYKDW 427
W +WK RN+L+FR + Q+ + A ++W
Sbjct: 361 PWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEW 397
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 41.2 bits (95), Expect(2) = 2e-07
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Frame = +2
Query: 158 EDLNHLFFKCPF--SLRSLELLQSLIGITFNIDLGNDFYTNMEFFHSRYKNXXXXXXXXW 331
E +NH+ F CP+ S+ L L G TF+ D + + F + N W
Sbjct: 1408 ETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDTEENISFLINSFSNNTLNTEQRLAPFW 1467
Query: 332 TIW---KVRNDLIFRKIPLDIQKTVNIAFISYKDWM 430
IW K RN+L+F K + V +W+
Sbjct: 1468 LIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNEWL 1503
Score = 39.3 bits (90), Expect(2) = 2e-07
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +3
Query: 21 LWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLC 146
LWKL I PKIK LW+ S +LPT RL + C C
Sbjct: 1362 LWKLPIIPKIKYMLWRTISKALPTRSRLLTRGMDIDPHCPRC 1403
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 42.0 bits (97), Expect(2) = 2e-06
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 21 LWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLC 146
+WKL++PPKI FLW+C ++ L L SCV C
Sbjct: 1054 IWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRC 1095
Score = 35.0 bits (79), Expect(2) = 2e-06
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Frame = +2
Query: 158 EDLNHLFFKCPFSLRSLELLQSLIGITFNIDLGNDFYTNMEFFHSRYK-------NXXXX 316
E +NHL FKCPF+ L S + + + NM S +K +
Sbjct: 1100 ETVNHLLFKCPFA--RLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHALI 1157
Query: 317 XXXXWTIWKVRNDLIFR 367
W +WK RNDL+F+
Sbjct: 1158 PWILWRLWKNRNDLVFK 1174
>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
Length = 851
Score = 45.4 bits (106), Expect(2) = 2e-06
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 15 TWLWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLC 146
T +W L I PK+K FLW+ S +LPTT+RL ++ C C
Sbjct: 665 TKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPGCPRC 708
Score = 31.6 bits (70), Expect(2) = 2e-06
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Frame = +2
Query: 158 EDLNHLFFKCPFSLRSLELLQSLIGITFNIDLGNDFYTNMEFFHSRYKNXXXXXXXX--- 328
E +NH F CPF+ + L + + + L N+ N+ +N
Sbjct: 713 ESINHALFTCPFATMAWRLSDT--PLYRSSILSNNIEDNISNILLLLQNTTITDSQKLIP 770
Query: 329 ----WTIWKVRNDLIFRKIPLDIQKTVNIAFISYKDWM 430
W IWK RN+++F + TV A +W+
Sbjct: 771 FWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWL 808
>ref|XP_003629388.1| Cytochrome P450 [Medicago truncatula] gi|355523410|gb|AET03864.1|
Cytochrome P450 [Medicago truncatula]
Length = 687
Score = 43.1 bits (100), Expect(2) = 2e-06
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 3 PGFATWLWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLC 146
P ++W+L++PPK+K FLW+ + LPT RL + C +C
Sbjct: 363 PSNWNYIWRLKLPPKVKNFLWRACRNCLPTRIRLQSKGVQCIDRCAVC 410
Score = 33.9 bits (76), Expect(2) = 2e-06
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 158 EDLNHLFFKCPFSLRSLELLQSLIGITFNIDLGNDFYTNMEFF--HSRYKNXXXXXXXXW 331
ED NHLFF C S+ + + + D+ F TN+ H + W
Sbjct: 415 EDSNHLFFMCSKSMLYWQRIGLWSPLMAVFDINVSFPTNVFAILQHLDQQQKQIFSVTLW 474
Query: 332 TIWKVRNDLIFRKI 373
+IWK RN+ ++ I
Sbjct: 475 SIWKHRNNKVWNNI 488
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 41.6 bits (96), Expect(2) = 3e-06
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 18 WLWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLC 146
++WK++ PPK++ FLW+ S +P +E L + CV C
Sbjct: 827 YIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSC 869
Score = 34.7 bits (78), Expect(2) = 3e-06
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +2
Query: 158 EDLNHLFFKCPFSLRSLELLQSLIGITFNIDLGNDFYTNMEFFHSRYKNXXXXXXXXWTI 337
E +NH F+C + + L Q I I N +TN++ R + W I
Sbjct: 874 ESINHTLFQCHPARQIWALSQ--IPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAPYPWII 931
Query: 338 W---KVRNDLIFRKIPLDIQKTVNIAFISYKDW 427
W K RN+ +F + D + + +A + W
Sbjct: 932 WYIWKARNEKVFENVDKDPMEILLLAVKEAQSW 964
>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1389
Score = 56.2 bits (134), Expect = 4e-06
Identities = 26/55 (47%), Positives = 31/55 (56%)
Frame = +3
Query: 18 WLWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLCTLPLKT*TICFL 182
W+W + PPKIK FLWK +D L TT RL R V +C C P + TIC L
Sbjct: 1051 WIWGIHAPPKIKNFLWKACNDGLATTSRLERSHIFVPQNCCFCDCPSE--TICHL 1103
>gb|AAK98741.1|AC090485_20 Hypothetical protein similar to putative retroelements [Oryza
sativa Japonica Group] gi|27497213|gb|AAO17357.1|
Putative retroelement [Oryza sativa Japonica Group]
gi|108706160|gb|ABF93955.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
gi|125584905|gb|EAZ25569.1| hypothetical protein
OsJ_09395 [Oryza sativa Japonica Group]
Length = 387
Score = 40.4 bits (93), Expect(2) = 5e-06
Identities = 21/91 (23%), Positives = 40/91 (43%)
Frame = +2
Query: 155 IEDLNHLFFKCPFSLRSLELLQSLIGITFNIDLGNDFYTNMEFFHSRYKNXXXXXXXXWT 334
+ED H+F +CP + ++Q + I+ DL N + + + W
Sbjct: 274 LEDTYHIFLRCPMAAAFWNMIQIIPEISSLSDLHN---LELSGPLPTFLSSTFFLLCCWR 330
Query: 335 IWKVRNDLIFRKIPLDIQKTVNIAFISYKDW 427
+W RN+++F+ +P I + +N K W
Sbjct: 331 LWNHRNEVVFQNLPPSISRLINSCLQDAKLW 361
Score = 35.4 bits (80), Expect(2) = 5e-06
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 9 FATW-----LWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLCTLPLK 161
F TW +W+ PP++K F W + LPT L++ + +C LC L+
Sbjct: 220 FETWPPWSAIWRSAAPPRVKFFAWLMSKNRLPTRVNLHKKTILPTPTCELCNANLE 275
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 39.3 bits (90), Expect(2) = 6e-06
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 21 LWKLEIPPKIKKFLWKCFSDSLPTTERLNRFFSKVSSSCVLCTLPLKT 164
+W LE PKIK F+WK +L +RL + + C+ C ++T
Sbjct: 998 VWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGCLFCKEEIET 1045
Score = 36.2 bits (82), Expect(2) = 6e-06
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +2
Query: 155 IEDLNHLFFKCPFSLR--SLELLQSL---IGITFNIDLGNDFYTNMEFFHSRYKNXXXXX 319
IE +NHL F+CPF+ + +L L+Q+ G + ++ + + F R+
Sbjct: 1043 IETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHMR-TVSP 1101
Query: 320 XXXWTIWKVRNDLIFRKIPLDIQKTVNIAFISYKDWM 430
W IWK RN +F+ L + V A+ W+
Sbjct: 1102 WLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWI 1138