BLASTX nr result
ID: Rheum21_contig00037523
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00037523
(236 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 53 1e-10
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 53 1e-10
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 53 2e-10
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 53 2e-10
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 53 2e-10
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 53 2e-10
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 53 2e-10
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g... 53 2e-10
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 53 2e-10
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 52 3e-10
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 52 3e-10
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 50 5e-10
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 50 8e-10
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 52 9e-10
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 50 9e-10
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 50 1e-09
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 53 1e-09
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 50 1e-09
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 50 1e-09
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 50 1e-09
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 52.8 bits (125), Expect(2) = 1e-10
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL K G+L Q + CE+CIFGKH +
Sbjct: 351 TNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKR 396
Score = 38.9 bits (89), Expect(2) = 1e-10
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA+ + GG
Sbjct: 399 FNTSTHTTEGTLDYVHSDLWGPARKTSFGG 428
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 53.1 bits (126), Expect(2) = 1e-10
Identities = 25/46 (54%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL K G+L Q + + CE+CIFGKH +
Sbjct: 433 TNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKR 478
Score = 38.1 bits (87), Expect(2) = 1e-10
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA+ + GG
Sbjct: 481 FNTSTHTTEGILDYVHSDLWGPARKTSFGG 510
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 52.8 bits (125), Expect(2) = 2e-10
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL K G+L Q + CE+CIFGKH +
Sbjct: 448 TNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKR 493
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA+ + GG
Sbjct: 496 FNTSTHTTEGILDYVHSDLWGPARKTSFGG 525
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 52.8 bits (125), Expect(2) = 2e-10
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL K G+L Q + CE+CIFGKH +
Sbjct: 342 TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKR 387
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA+ + GG
Sbjct: 390 FNTSTHTTEGILDYVHSDLWGPARKTSFGG 419
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 52.8 bits (125), Expect(2) = 2e-10
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL K G+L Q + CE+CIFGKH +
Sbjct: 394 TNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKR 439
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA+ + GG
Sbjct: 442 FNTSTHTTEGILDYVHSDLWGPARKTSFGG 471
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 52.8 bits (125), Expect(2) = 2e-10
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL K G+L Q + CE+CIFGKH +
Sbjct: 265 TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKR 310
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA+ + GG
Sbjct: 313 FNTSTHTTEGILDYVHSDLWGPARKTSFGG 342
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 52.8 bits (125), Expect(2) = 2e-10
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL K G+L Q + CE+CIFGKH +
Sbjct: 265 TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKR 310
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA+ + GG
Sbjct: 313 FNTSTHTTEGILDYVHSDLWGPARKTSFGG 342
>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
Japonica Group]
Length = 778
Score = 52.8 bits (125), Expect(2) = 2e-10
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL K G+L Q + CE+CIFGKH +
Sbjct: 399 TNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKR 444
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA+ + GG
Sbjct: 447 FNTSTHTTEGILDYVHSDLWGPARKTSFGG 476
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 52.8 bits (125), Expect(2) = 2e-10
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL K G+L Q + CE+CIFGKH +
Sbjct: 405 TNLWHMRLGHMSEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKR 450
Score = 37.7 bits (86), Expect(2) = 2e-10
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA + GG
Sbjct: 453 FNTSTHTTEGILDYVHSDLWGPAHKTSFGG 482
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 52.0 bits (123), Expect(2) = 3e-10
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL K G+L Q + CE+CIFGKH +
Sbjct: 640 TNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKR 685
Score = 38.1 bits (87), Expect(2) = 3e-10
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA+ + GG
Sbjct: 688 FNTSTHTTEGILDYVHSDLWGPARKTSFGG 717
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 52.0 bits (123), Expect(2) = 3e-10
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL K G+L Q + CE+CIFGKH +
Sbjct: 433 TNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKR 478
Score = 38.1 bits (87), Expect(2) = 3e-10
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA+ + GG
Sbjct: 481 FNTSTHTTEGILDYVHSDLWGPARKTSFGG 510
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 49.7 bits (117), Expect(2) = 5e-10
Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGK 110
T LWH RLGHI ++GL EL K G+L + K + CE+C+FGK
Sbjct: 391 TKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGK 433
Score = 39.7 bits (91), Expect(2) = 5e-10
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = -1
Query: 119 FWKAC*E*FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F KA F + + + L+YIHSDLWGP++V +IGG
Sbjct: 431 FGKATRVKFAKAIHETQNQLDYIHSDLWGPSRVPSIGG 468
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 50.4 bits (119), Expect(2) = 8e-10
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL G+L Q + CE+CIFGKH +
Sbjct: 418 TNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKR 463
Score = 38.1 bits (87), Expect(2) = 8e-10
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA+ + GG
Sbjct: 466 FNTSTHTTEGILDYVHSDLWGPARKTSFGG 495
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549746|gb|ABA92543.1|
retrotransposon protein, putative, Ty1-copia subclass,
expressed [Oryza sativa Japonica Group]
Length = 1170
Score = 52.4 bits (124), Expect(2) = 9e-10
Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKH 107
TNLWH RLGH+ GL EL K G+L Q + CE+CIFGKH
Sbjct: 468 TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKH 511
Score = 36.2 bits (82), Expect(2) = 9e-10
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HS+LWGPA+ + GG
Sbjct: 516 FNTSTHTTEGILDYVHSNLWGPARKTSFGG 545
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 50.4 bits (119), Expect(2) = 9e-10
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ GL EL G+L Q + CE+CIFGKH +
Sbjct: 250 TNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKR 295
Score = 38.1 bits (87), Expect(2) = 9e-10
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S++ + L+Y+HSDLWGPA+ + GG
Sbjct: 298 FNTSTHTTEGILDYVHSDLWGPARKTSFGG 327
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 50.4 bits (119), Expect(2) = 1e-09
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ + G+ EL K +L + + CE+CIFGKH +
Sbjct: 427 TNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKR 472
Score = 37.7 bits (86), Expect(2) = 1e-09
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S + K L+Y+H+DLWGP++ ++GG
Sbjct: 475 FNTSVHTTKGTLDYVHADLWGPSKKPSLGG 504
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 52.8 bits (125), Expect(2) = 1e-09
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGML-SQKPNVVDKCENCIFGKHAKS 98
T LWH RLGH+ KGL EL K G+L + ++ CENCIFGK +S
Sbjct: 423 TKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRS 469
Score = 35.4 bits (80), Expect(2) = 1e-09
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +++K+ L+Y H D WGPAQV ++ G
Sbjct: 471 FNKGEHMSKQVLDYAHIDHWGPAQVPSLSG 500
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 50.1 bits (118), Expect(2) = 1e-09
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGMLSQ-KPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ + G+ EL K +L + + CE+CIFGKH +
Sbjct: 425 TNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKR 470
Score = 37.7 bits (86), Expect(2) = 1e-09
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S + K L+Y+H+DLWGP++ ++GG
Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGG 502
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 50.1 bits (118), Expect(2) = 1e-09
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGMLSQ-KPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ + G+ EL K +L + + CE+CIFGKH +
Sbjct: 425 TNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKR 470
Score = 37.7 bits (86), Expect(2) = 1e-09
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S + K L+Y+H+DLWGP++ ++GG
Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGG 502
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 50.1 bits (118), Expect(2) = 1e-09
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 235 TNLWHARLGHIGNKGLHELFKHGMLSQ-KPNVVDKCENCIFGKHAK 101
TNLWH RLGH+ + G+ EL K +L + + CE+CIFGKH +
Sbjct: 425 TNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKR 470
Score = 37.7 bits (86), Expect(2) = 1e-09
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -1
Query: 95 FKSSSYVAKRPLEYIHSDLWGPAQVDTIGG 6
F +S + K L+Y+H+DLWGP++ ++GG
Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGG 502