BLASTX nr result
ID: Rheum21_contig00037497
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00037497
(283 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004158141.1| PREDICTED: serine/threonine-protein kinase T... 70 4e-10
gb|EOY33067.1| General transcription factor II H2 isoform 1 [The... 69 5e-10
ref|XP_004143721.1| PREDICTED: general transcription factor IIH ... 68 1e-09
emb|CBI16283.3| unnamed protein product [Vitis vinifera] 64 2e-08
ref|XP_002284994.1| PREDICTED: general transcription factor IIH ... 64 2e-08
ref|XP_002448148.1| hypothetical protein SORBIDRAFT_06g022140 [S... 64 2e-08
ref|XP_004493385.1| PREDICTED: general transcription factor IIH ... 64 3e-08
ref|XP_004237420.1| PREDICTED: general transcription factor IIH ... 64 3e-08
ref|XP_006418067.1| hypothetical protein EUTSA_v10007730mg [Eutr... 63 4e-08
ref|XP_006418066.1| hypothetical protein EUTSA_v10007730mg [Eutr... 63 4e-08
ref|XP_006307618.1| hypothetical protein CARUB_v10009246mg [Caps... 63 4e-08
ref|NP_683275.2| transcription initiation factor TFIIH subunit H... 63 4e-08
ref|XP_002892263.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. l... 63 4e-08
ref|XP_003624959.1| General transcription factor IIH subunit [Me... 63 4e-08
ref|XP_006491820.1| PREDICTED: general transcription factor IIH ... 62 6e-08
gb|ESW34067.1| hypothetical protein PHAVU_001G121400g [Phaseolus... 62 6e-08
ref|XP_006428490.1| hypothetical protein CICLE_v10011800mg [Citr... 62 6e-08
ref|XP_004309875.1| PREDICTED: TFIIH basal transcription factor ... 62 6e-08
ref|XP_003554116.1| PREDICTED: general transcription factor IIH ... 62 6e-08
ref|XP_003537621.1| PREDICTED: general transcription factor IIH ... 62 6e-08
>ref|XP_004158141.1| PREDICTED: serine/threonine-protein kinase TIO-like [Cucumis
sativus]
Length = 899
Score = 69.7 bits (169), Expect = 4e-10
Identities = 35/57 (61%), Positives = 47/57 (82%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQVM 111
+LQEDESGLL PID + + H+QYR RLR++S AT A+I KGLI YLY+V++FS+V+
Sbjct: 40 ALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKVI 96
>gb|EOY33067.1| General transcription factor II H2 isoform 1 [Theobroma cacao]
gi|508785812|gb|EOY33068.1| General transcription factor
II H2 isoform 1 [Theobroma cacao]
gi|508785813|gb|EOY33069.1| General transcription factor
II H2 isoform 1 [Theobroma cacao]
Length = 420
Score = 69.3 bits (168), Expect = 5e-10
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
SLQEDESGLL PID + L HSQYR RLRS+S AT A+I KGLI YLY+V++ S+
Sbjct: 41 SLQEDESGLLRPIDNKALYHSQYRRRLRSLSSTATAARIQKGLIRYLYLVIDLSR 95
>ref|XP_004143721.1| PREDICTED: general transcription factor IIH subunit 2-like [Cucumis
sativus]
Length = 423
Score = 67.8 bits (164), Expect = 1e-09
Identities = 34/55 (61%), Positives = 45/55 (81%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
+LQEDESGLL PID + + H+QYR RLR++S AT A+I KGLI YLY+V++FS+
Sbjct: 40 ALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSK 94
>emb|CBI16283.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 64.3 bits (155), Expect = 2e-08
Identities = 33/55 (60%), Positives = 43/55 (78%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
SLQEDESGLL PID + + H+QYR R+RS+ + T A+I KGLI YLY+VV+ S+
Sbjct: 112 SLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIRYLYIVVDLSR 166
>ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
vinifera]
Length = 433
Score = 64.3 bits (155), Expect = 2e-08
Identities = 33/55 (60%), Positives = 43/55 (78%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
SLQEDESGLL PID + + H+QYR R+RS+ + T A+I KGLI YLY+VV+ S+
Sbjct: 51 SLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIRYLYIVVDLSR 105
>ref|XP_002448148.1| hypothetical protein SORBIDRAFT_06g022140 [Sorghum bicolor]
gi|241939331|gb|EES12476.1| hypothetical protein
SORBIDRAFT_06g022140 [Sorghum bicolor]
Length = 431
Score = 63.9 bits (154), Expect = 2e-08
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
SLQEDESGLL PID + L HSQYR RL S AA A+I KGLI YLY+V++ S+
Sbjct: 56 SLQEDESGLLHPIDTKALVHSQYRRRLLLRSAAAAAARIQKGLIRYLYIVIDLSR 110
>ref|XP_004493385.1| PREDICTED: general transcription factor IIH subunit 2-like [Cicer
arietinum]
Length = 422
Score = 63.5 bits (153), Expect = 3e-08
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
SLQEDESGLL PID + H+QYR RLR+++ A A+I KGLI Y+Y+VV+ S+
Sbjct: 42 SLQEDESGLLRPIDTTAIHHAQYRRRLRALAATAATARIQKGLIRYMYIVVDLSK 96
>ref|XP_004237420.1| PREDICTED: general transcription factor IIH subunit 2-like [Solanum
lycopersicum]
Length = 414
Score = 63.5 bits (153), Expect = 3e-08
Identities = 34/55 (61%), Positives = 43/55 (78%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
SLQEDESGLL PID + L H+QYR RLR+ AT A+I KGLI YLY++++FS+
Sbjct: 37 SLQEDESGLLRPIDNKTLSHAQYRRRLRT----ATAARIQKGLIRYLYIIIDFSR 87
>ref|XP_006418067.1| hypothetical protein EUTSA_v10007730mg [Eutrema salsugineum]
gi|557095838|gb|ESQ36420.1| hypothetical protein
EUTSA_v10007730mg [Eutrema salsugineum]
Length = 421
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
+LQEDESGLL PID + H+QYR RLR +S AA +I KGLI YLY+V++FS+
Sbjct: 38 ALQEDESGLLRPIDNSAIYHAQYRRRLRILSAAAAGTRIQKGLIRYLYIVIDFSR 92
>ref|XP_006418066.1| hypothetical protein EUTSA_v10007730mg [Eutrema salsugineum]
gi|557095837|gb|ESQ36419.1| hypothetical protein
EUTSA_v10007730mg [Eutrema salsugineum]
Length = 389
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
+LQEDESGLL PID + H+QYR RLR +S AA +I KGLI YLY+V++FS+
Sbjct: 38 ALQEDESGLLRPIDNSAIYHAQYRRRLRILSAAAAGTRIQKGLIRYLYIVIDFSR 92
>ref|XP_006307618.1| hypothetical protein CARUB_v10009246mg [Capsella rubella]
gi|482576329|gb|EOA40516.1| hypothetical protein
CARUB_v10009246mg [Capsella rubella]
Length = 421
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/54 (61%), Positives = 41/54 (75%)
Frame = -3
Query: 278 LQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
LQEDESGLL PID + H+QYR RLR +S AA +I KGLI YLY+V++FS+
Sbjct: 39 LQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSR 92
>ref|NP_683275.2| transcription initiation factor TFIIH subunit H2 [Arabidopsis
thaliana] gi|22087278|gb|AAM90909.1|AF499443_1
p44/SSL1-like protein [Arabidopsis thaliana]
gi|4056421|gb|AAC97995.1| Similar to gb|Z30094 basic
transcripion factor 2, 44 kD subunit from Homo sapiens.
EST gb|W43325 comes from this gene [Arabidopsis
thaliana] gi|110738828|dbj|BAF01337.1| putative
transcription factor [Arabidopsis thaliana]
gi|332189663|gb|AEE27784.1| transcription initiation
factor TFIIH subunit H2 [Arabidopsis thaliana]
Length = 421
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/54 (61%), Positives = 41/54 (75%)
Frame = -3
Query: 278 LQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
LQEDESGLL PID + H+QYR RLR +S AA +I KGLI YLY+V++FS+
Sbjct: 39 LQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSR 92
>ref|XP_002892263.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. lyrata]
gi|297338105|gb|EFH68522.1| ATGTF2H2/GTF2H2 [Arabidopsis
lyrata subsp. lyrata]
Length = 421
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/54 (61%), Positives = 41/54 (75%)
Frame = -3
Query: 278 LQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
LQEDESGLL PID + H+QYR RLR +S AA +I KGLI YLY+V++FS+
Sbjct: 39 LQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSR 92
>ref|XP_003624959.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355499974|gb|AES81177.1| General transcription factor
IIH subunit [Medicago truncatula]
Length = 426
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
SLQEDESGLL PID + H+QYR RLR+++ A A+I KGLI YLY+VV+ S+
Sbjct: 41 SLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAATARIQKGLIRYLYIVVDLSK 95
>ref|XP_006491820.1| PREDICTED: general transcription factor IIH subunit 2-like isoform
X1 [Citrus sinensis] gi|568877611|ref|XP_006491821.1|
PREDICTED: general transcription factor IIH subunit
2-like isoform X2 [Citrus sinensis]
gi|568877613|ref|XP_006491822.1| PREDICTED: general
transcription factor IIH subunit 2-like isoform X3
[Citrus sinensis] gi|568877615|ref|XP_006491823.1|
PREDICTED: general transcription factor IIH subunit
2-like isoform X4 [Citrus sinensis]
Length = 425
Score = 62.4 bits (150), Expect = 6e-08
Identities = 33/55 (60%), Positives = 40/55 (72%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
+LQEDESG L PID H+QYR RLR SL AT A+I KGLI YLY+V++ S+
Sbjct: 43 ALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSR 97
>gb|ESW34067.1| hypothetical protein PHAVU_001G121400g [Phaseolus vulgaris]
Length = 420
Score = 62.4 bits (150), Expect = 6e-08
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
+LQEDESGLL PID + H+QYR RLR+++ A A+I KGLI YLY+VV+ S+
Sbjct: 39 ALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIRYLYIVVDLSK 93
>ref|XP_006428490.1| hypothetical protein CICLE_v10011800mg [Citrus clementina]
gi|567871805|ref|XP_006428492.1| hypothetical protein
CICLE_v10011800mg [Citrus clementina]
gi|557530547|gb|ESR41730.1| hypothetical protein
CICLE_v10011800mg [Citrus clementina]
gi|557530549|gb|ESR41732.1| hypothetical protein
CICLE_v10011800mg [Citrus clementina]
Length = 425
Score = 62.4 bits (150), Expect = 6e-08
Identities = 33/55 (60%), Positives = 40/55 (72%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
+LQEDESG L PID H+QYR RLR SL AT A+I KGLI YLY+V++ S+
Sbjct: 43 ALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSR 97
>ref|XP_004309875.1| PREDICTED: TFIIH basal transcription factor complex p47
subunit-like [Fragaria vesca subsp. vesca]
Length = 420
Score = 62.4 bits (150), Expect = 6e-08
Identities = 35/55 (63%), Positives = 42/55 (76%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
SLQEDESGLL PID + L H+QYR RLR AAT A+I KGLI YLY+V++ S+
Sbjct: 41 SLQEDESGLLRPIDNQSLHHAQYRRRLR----AATTARIQKGLIRYLYIVIDLSK 91
>ref|XP_003554116.1| PREDICTED: general transcription factor IIH subunit 2 [Glycine max]
Length = 420
Score = 62.4 bits (150), Expect = 6e-08
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
+LQEDESGLL PID + H+QYR RLR+++ A A+I KGLI YLY+VV+ S+
Sbjct: 39 ALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIRYLYIVVDLSK 93
>ref|XP_003537621.1| PREDICTED: general transcription factor IIH subunit 2-like isoform
X1 [Glycine max] gi|571487648|ref|XP_006590708.1|
PREDICTED: general transcription factor IIH subunit
2-like isoform X2 [Glycine max]
gi|571487650|ref|XP_006590709.1| PREDICTED: general
transcription factor IIH subunit 2-like isoform X3
[Glycine max] gi|571487652|ref|XP_006590710.1|
PREDICTED: general transcription factor IIH subunit
2-like isoform X4 [Glycine max]
gi|571487654|ref|XP_006590711.1| PREDICTED: general
transcription factor IIH subunit 2-like isoform X5
[Glycine max]
Length = 419
Score = 62.4 bits (150), Expect = 6e-08
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = -3
Query: 281 SLQEDESGLLFPID*RKLDHSQYR*RLRSISLAATVAQI*KGLICYLYVVVNFSQ 117
+LQEDESGLL PID + H+QYR RLR+++ A A+I KGLI YLY+VV+ S+
Sbjct: 39 ALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIRYLYIVVDLSK 93