BLASTX nr result
ID: Rheum21_contig00037403
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00037403
(381 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo s... 88 1e-15
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris] 68 1e-09
emb|CAD39659.2| OSJNBa0074B10.16 [Oryza sativa Japonica Group] 57 3e-06
emb|CAE02382.2| OSJNBb0080H08.8 [Oryza sativa Japonica Group] 56 6e-06
gb|ABA97585.1| retrotransposon protein, putative, Ty1-copia subc... 55 7e-06
emb|CAH65871.1| OSIGBa0103I21.4 [Oryza sativa Indica Group] 55 7e-06
gb|ABF95685.1| retrotransposon protein, putative, Ty1-copia subc... 55 7e-06
gb|EXB75595.1| Retrovirus-related Pol polyprotein from transposo... 55 1e-05
>gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
Length = 1038
Score = 87.8 bits (216), Expect = 1e-15
Identities = 53/127 (41%), Positives = 67/127 (52%)
Frame = -1
Query: 381 ANRLKDKPAPKNSENSVKANLVESSNANRFKKKDSPAVPKNDKVQNKKGPNFKKQGKAAE 202
ANRLKDK A +N NSV ANLVESS NR + K K K +N + FK G +
Sbjct: 222 ANRLKDKLASQNL-NSVNANLVESSFVNRDRTKQE----KGHKGKNSEKRQFKTTGGQIK 276
Query: 201 KSKSGCYVCGKPGHKAFQCFHRNDIQRNAPKPNGDQEKAQVNITEGMDDLIAMITEVNIV 22
K K CYVC K GHK++QC R P P Q N+ E ++IA I E N++
Sbjct: 277 KKKLVCYVCRKEGHKSYQCNQRKGRPSQKPTP-------QANLAEQDSEIIAAIVEANLI 329
Query: 21 AEKVNWL 1
K +W+
Sbjct: 330 ENKTDWI 336
>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1290
Score = 68.2 bits (165), Expect = 1e-09
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Frame = -1
Query: 369 KDKPAPKNSENSVKANLVESSNA-NRFKKKDSPAVPKNDKVQNKKG--PNFKKQGKAAEK 199
K+ A K S KAN++E A R++KK N+K G P FKK+G
Sbjct: 216 KECAAAKAKALSAKANVIEDKPAPKRYEKKFDHKKKPNNKFSRPSGTNPTFKKKGN---- 271
Query: 198 SKSGCYVCGKPGHKAFQCFHRNDIQRNAPKPNGDQEKAQVNITEGMDDLIAMITEVNIVA 19
C+VCGKPGH A QC HR +N P + N+ EG D ++A++++VN+V
Sbjct: 272 ----CFVCGKPGHHAPQCRHR---AKNDYPP-------KANLAEGEDTIVAVVSQVNLVT 317
Query: 18 EKVNWL 1
W+
Sbjct: 318 NVSKWV 323
>emb|CAD39659.2| OSJNBa0074B10.16 [Oryza sativa Japonica Group]
Length = 1006
Score = 56.6 bits (135), Expect = 3e-06
Identities = 35/82 (42%), Positives = 43/82 (52%)
Frame = -1
Query: 375 RLKDKPAPKNSENSVKANLVESSNANRFKKKDSPAVPKNDKVQNKKGPNFKKQGKAAEKS 196
R KD KN E ANLV+ N + ++ V N V+ K NFKK+GK K+
Sbjct: 268 RAKDNRG-KNIEGGSSANLVQKKNLHASHNNNNKKVKPN--VKPKATTNFKKKGKG--KA 322
Query: 195 KSGCYVCGKPGHKAFQCFHRND 130
K C+VCGKPGH A C R D
Sbjct: 323 KGDCFVCGKPGHWAKNCPDRKD 344
>emb|CAE02382.2| OSJNBb0080H08.8 [Oryza sativa Japonica Group]
Length = 1183
Score = 55.8 bits (133), Expect = 6e-06
Identities = 38/86 (44%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = -1
Query: 375 RLKDKPAPKNSENSVKANLVESSNA----NRFKKKDSPAVPKNDKVQNKKGPNFKKQGKA 208
R KD KN E ANLV++ N N KKK P V+ K NFKK+GK
Sbjct: 355 RAKDNRG-KNIEGGSSANLVQNKNPHASHNNNKKKVKP------DVKPKATTNFKKKGKG 407
Query: 207 AEKSKSGCYVCGKPGHKAFQCFHRND 130
K+K C+VCGKPGH A C R D
Sbjct: 408 --KAKGDCFVCGKPGHWAKNCPDRKD 431
>gb|ABA97585.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 401
Score = 55.5 bits (132), Expect = 7e-06
Identities = 34/82 (41%), Positives = 41/82 (50%)
Frame = -1
Query: 375 RLKDKPAPKNSENSVKANLVESSNANRFKKKDSPAVPKNDKVQNKKGPNFKKQGKAAEKS 196
R KD KN E ANLV+ N + + P V+ K NFKK+GK K+
Sbjct: 308 RAKDNRG-KNIEEGFSANLVQKKNPHASHNNNQKVKPD---VKPKATTNFKKKGKG--KA 361
Query: 195 KSGCYVCGKPGHKAFQCFHRND 130
K C+VCGKPGH A C R D
Sbjct: 362 KGDCFVCGKPGHWAKDCPERKD 383
>emb|CAH65871.1| OSIGBa0103I21.4 [Oryza sativa Indica Group]
Length = 964
Score = 55.5 bits (132), Expect = 7e-06
Identities = 38/86 (44%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = -1
Query: 375 RLKDKPAPKNSENSVKANLVESSNA----NRFKKKDSPAVPKNDKVQNKKGPNFKKQGKA 208
R KD KN E ANLV+ N N KKK P V+ K NFKK+GK
Sbjct: 158 RAKDNRG-KNIEGGSSANLVQKKNPHASHNNNKKKVKP------DVKPKATTNFKKKGKG 210
Query: 207 AEKSKSGCYVCGKPGHKAFQCFHRND 130
K+K C+VCGKPGH A C R D
Sbjct: 211 --KAKGDCFVCGKPGHWAKNCPDRKD 234
>gb|ABF95685.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1061
Score = 55.5 bits (132), Expect = 7e-06
Identities = 34/82 (41%), Positives = 44/82 (53%)
Frame = -1
Query: 375 RLKDKPAPKNSENSVKANLVESSNANRFKKKDSPAVPKNDKVQNKKGPNFKKQGKAAEKS 196
R+KD KN E ANLV+ N + ++ V + V+ K NFKK+GK K+
Sbjct: 262 RVKDNRG-KNIEGGSSANLVQKKNPHASHNNNNKKVKPD--VKPKATTNFKKKGKG--KA 316
Query: 195 KSGCYVCGKPGHKAFQCFHRND 130
K C+VCGKPGH A C R D
Sbjct: 317 KGDCFVCGKPGHWAKNCPDRKD 338
>gb|EXB75595.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 440
Score = 55.1 bits (131), Expect = 1e-05
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Frame = -1
Query: 330 KANLVESSNANRFKKKDSPAVPKNDKVQNKKGPNFKKQGKAAEKSKSGCYVCGKPGHKAF 151
K+ V+SS N ++ KN KV N K FKK G +K C+ CGK GH
Sbjct: 61 KSKNVDSSKVN---VAEASKFSKNFKVNNDK--KFKKPGNGQKKFSENCFFCGKKGHHQN 115
Query: 150 QCFHRNDIQRNAPKPNGDQEKAQVNITEGMDDLIAMITEVNIVAEKVN--WL 1
C ++ + N N +EK++ + I MITE N+ A K + WL
Sbjct: 116 DCRYKKKKEVNTNNANAVEEKSEDICAMVSELQIGMITETNMAASKSSDWWL 167