BLASTX nr result
ID: Rheum21_contig00037372
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00037372
(350 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 100 3e-19
gb|ABK28199.1| unknown [Arabidopsis thaliana] 94 1e-17
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali... 94 1e-17
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 94 1e-17
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 94 2e-17
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 94 2e-17
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 93 4e-17
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 86 4e-15
gb|EOX92929.1| Ribonuclease H protein [Theobroma cacao] 86 7e-15
gb|EOY24030.1| Ribonuclease H protein [Theobroma cacao] 85 9e-15
gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana] 85 9e-15
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 84 1e-14
ref|XP_002314708.1| predicted protein [Populus trichocarpa] 84 1e-14
ref|XP_002309989.1| predicted protein [Populus trichocarpa] 84 1e-14
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 84 1e-14
gb|EOY02376.1| LINE-type retrotransposon LIb DNA, Insertion at t... 84 2e-14
gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theob... 82 7e-14
gb|EOY00974.1| Uncharacterized protein TCM_010875 [Theobroma cacao] 81 1e-13
ref|XP_002324246.1| predicted protein [Populus trichocarpa] 81 1e-13
gb|EOY02369.1| Kinase superfamily protein isoform 5 [Theobroma c... 81 2e-13
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 100 bits (248), Expect = 3e-19
Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Frame = -2
Query: 316 DKAAFIRHSVREYSLACERRRSSAIQGSKSEMQISWVKPPEGWIKVNTDGTVK--EGRVA 143
D+ FI+ E ++A + + ++ S+ E +SWV P +GW+K+NTDG + G
Sbjct: 118 DRVKFIKDLAEEVAIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNTDGASRGNPGFAT 177
Query: 142 AGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDRGYR 5
AGGVLR+ +G WIGGFA NIG C+ P AEL G+ GL +AW RG R
Sbjct: 178 AGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGAR 223
>gb|ABK28199.1| unknown [Arabidopsis thaliana]
Length = 315
Score = 94.4 bits (233), Expect = 1e-17
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Frame = -2
Query: 343 VFNREEFHGDKAAFIRHSVREYSLACERRRS-SAIQGSKSEMQISWVKPPEGWIKVNTDG 167
+F ++ D+ F++ RE S+A R+ S G + E I+W KP EGW K+NTDG
Sbjct: 101 IFGVQDKCRDRVRFLKDLARETSMAHVIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDG 160
Query: 166 TVK--EGRVAAGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDR 14
+ G +AGGVLR+ +G W GGFA NIG C+ P AEL G+ GL +AW+R
Sbjct: 161 ASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWER 213
>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
Length = 314
Score = 94.4 bits (233), Expect = 1e-17
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Frame = -2
Query: 343 VFNREEFHGDKAAFIRHSVREYSLACERRRS-SAIQGSKSEMQISWVKPPEGWIKVNTDG 167
+F ++ D+ F++ RE S+A R+ S G + E I+W KP EGW K+NTDG
Sbjct: 101 IFGVQDKCRDRVRFLKDLARETSMAHVIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDG 160
Query: 166 TVK--EGRVAAGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDR 14
+ G +AGGVLR+ +G W GGFA NIG C+ P AEL G+ GL +AW+R
Sbjct: 161 ASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWER 213
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 314
Score = 94.4 bits (233), Expect = 1e-17
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Frame = -2
Query: 343 VFNREEFHGDKAAFIRHSVREYSLACERRRS-SAIQGSKSEMQISWVKPPEGWIKVNTDG 167
+F ++ D+ F++ RE S+A R+ S G + E I+W KP EGW K+NTDG
Sbjct: 101 IFGVQDKCRDRVRFLKDLARETSMAHVIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDG 160
Query: 166 TVK--EGRVAAGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDR 14
+ G +AGGVLR+ +G W GGFA NIG C+ P AEL G+ GL +AW+R
Sbjct: 161 ASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWER 213
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 93.6 bits (231), Expect = 2e-17
Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Frame = -2
Query: 343 VFNREEFHGDKAAFIRHSVREYSLACERRRSSAIQGSKSEMQISWVKPPEGWIKVNTDGT 164
VF + D+ F++ +V E A A + E I+W KP EGW+ +NTDG
Sbjct: 464 VFGEDSRCRDRVKFLKSAVAEVEAAHLAANGDAREDVLVERMIAWRKPAEGWVTMNTDGA 523
Query: 163 V--KEGRVAAGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDRGYR 5
G+ AGGV+R+ G W+ GFA NIG C+ P AEL G+ GL +AW+RG+R
Sbjct: 524 SHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWR 578
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 93.6 bits (231), Expect = 2e-17
Identities = 48/103 (46%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Frame = -2
Query: 316 DKAAFIRHSVREYSLACERRRSSAIQGSKSEMQISWVKPPEGWIKVNTDGTVK--EGRVA 143
D F+R E A +S + E +SWVKP EGW+K+NTDG K G
Sbjct: 591 DMVKFVRDRASEVIQAHLVEGNSGKIRGRIERMVSWVKPAEGWLKLNTDGASKGNPGLAT 650
Query: 142 AGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDR 14
AGG+LR DG WIGGFA NIG C+ P AEL + GL +AW+R
Sbjct: 651 AGGILRQQDGSWIGGFAVNIGICSAPLAELWRVYYGLYIAWER 693
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 92.8 bits (229), Expect = 4e-17
Identities = 46/115 (40%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Frame = -2
Query: 343 VFNREEFHGDKAAFIRHSVREYSLACERRRSSAIQGSKSEMQISWVKPPEGWIKVNTDGT 164
VF + D+ FI+ E + G + E I W P +GW+K+ TDG
Sbjct: 1019 VFGERKICRDRLKFIKDMAEEVRRVHVGAVGNRPNGVRVERMIRWQVPSDGWVKITTDGA 1078
Query: 163 VK--EGRVAAGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDRGYR 5
+ G AAGG +RN G W+GGFA NIG C P AEL G GL +AWD+G+R
Sbjct: 1079 SRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFR 1133
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 86.3 bits (212), Expect = 4e-15
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Frame = -2
Query: 343 VFNREEFHGDKAAFIRHSVREYSLACERRRSSAIQGSKSEMQISWVKPPEGWIKVNTDGT 164
VF + D+ FI+ E A ++ ++ ++ E I W P + W+K+ TDG
Sbjct: 758 VFGERKLCRDRLKFIKDIAEEVRKAHVGTLNNHVKRARVERMIRWKAPSDRWVKLTTDGA 817
Query: 163 VK--EGRVAAGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDRGYR 5
+ +G AA G + N G W+GGFA NIG C P AEL G GL +AWD+G+R
Sbjct: 818 SRGHQGLAAASGAILNLQGEWLGGFALNIGSCDAPLAELWGAYYGLLIAWDKGFR 872
>gb|EOX92929.1| Ribonuclease H protein [Theobroma cacao]
Length = 148
Score = 85.5 bits (210), Expect = 7e-15
Identities = 37/83 (44%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Frame = -2
Query: 250 SAIQGSKSEMQISWVKPPEGWIKVNTDGTVKEGR--VAAGGVLRNSDGVWIGGFAHNIGC 77
S + G K EM + W PP+GW+ VN DG ++ VAAGGVLR+ +G W+GGFA +G
Sbjct: 26 SRLNGYKREMLVGWQNPPQGWVAVNIDGALRRNTNMVAAGGVLRDYNGYWLGGFAVKLGK 85
Query: 76 CTVPKAELLGIINGLKLAWDRGY 8
C+ +AEL G+++ L++A ++G+
Sbjct: 86 CSSHRAELWGVLHSLRIAKEKGF 108
>gb|EOY24030.1| Ribonuclease H protein [Theobroma cacao]
Length = 148
Score = 85.1 bits (209), Expect = 9e-15
Identities = 36/83 (43%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Frame = -2
Query: 250 SAIQGSKSEMQISWVKPPEGWIKVNTDGTVK--EGRVAAGGVLRNSDGVWIGGFAHNIGC 77
S + G K EM + W PP+GW+ +NTDG ++ + AAGGVLR+ +G W+GG A +G
Sbjct: 26 SRLNGYKREMLVGWQNPPQGWVAINTDGALRCNTNKAAAGGVLRDYNGYWLGGSAAKLGK 85
Query: 76 CTVPKAELLGIINGLKLAWDRGY 8
C+ +AEL G+++ L++A D+G+
Sbjct: 86 CSSYRAELWGVLHSLRIAKDKGF 108
>gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]
Length = 233
Score = 85.1 bits (209), Expect = 9e-15
Identities = 47/113 (41%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = -2
Query: 343 VFNREEFHGDKAAFIRHSVREYSLACERRRSSAIQGSKSEMQISWVKPPEGWIKVNTDGT 164
VF D+ ++ +E + A S S+ E Q+ W KP GW K+NTDG
Sbjct: 21 VFGENRKCRDRVKLVKDIAQEVAKANNCGSGSNNSRSRMERQVRWSKPSLGWCKLNTDGA 80
Query: 163 V--KEGRVAAGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDRG 11
G AGG LRN G W GFA NIG C P AEL G+ GL +AWDRG
Sbjct: 81 SHGNPGLATAGGALRNEYGEWCFGFALNIGRCLAPLAELWGVYYGLFMAWDRG 133
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 84.3 bits (207), Expect = 1e-14
Identities = 43/98 (43%), Positives = 58/98 (59%), Gaps = 6/98 (6%)
Frame = -2
Query: 289 VREYSLACERRRSS----AIQGSKSEMQISWVKPPEGWIKVNTDGTVK--EGRVAAGGVL 128
V+E+++ R S I + E I WV P GW+KVNTDG + G +AGGVL
Sbjct: 531 VKEWAVEVYRAHSGNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVL 590
Query: 127 RNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDR 14
R+ G W GGF+ NIG C+ P+AEL G+ GL AW++
Sbjct: 591 RDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEK 628
>ref|XP_002314708.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 84.3 bits (207), Expect = 1e-14
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Frame = -2
Query: 349 NLVFNREEFHGDKAAF-IRHSVREYSLACERRRSSAIQGSKSEMQISWVKPPEGWIKVNT 173
N VF ++ + +A I+ VR+ +R + + SK + Q+ W P E IK+N
Sbjct: 30 NRVFGVDQGNWFRAILAIKRMVRDTEFT-QRHGNDEGRSSKEDTQVGWKYPQEERIKLNV 88
Query: 172 DGTVK--EGRVAAGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDRGYR 5
DG K G AGGV+R+ G WIGGFA NIG C+ AEL + GL+LAWDRG+R
Sbjct: 89 DGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAWDRGFR 146
>ref|XP_002309989.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 84.3 bits (207), Expect = 1e-14
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Frame = -2
Query: 349 NLVFNREEFHGDKAAF-IRHSVREYSLACERRRSSAIQGSKSEMQISWVKPPEGWIKVNT 173
N VF ++ + +A I+ VR+ +R + + SK + Q+ W P E IK+N
Sbjct: 30 NRVFGVDQGNWFRAILAIKRMVRDTEFT-QRHGNDEGRSSKEDTQVGWKYPQEERIKLNV 88
Query: 172 DGTVK--EGRVAAGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDRGYR 5
DG K G AGGV+R+ G WIGGFA NIG C+ AEL + GL+LAWDRG+R
Sbjct: 89 DGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAWDRGFR 146
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 84.3 bits (207), Expect = 1e-14
Identities = 43/98 (43%), Positives = 58/98 (59%), Gaps = 6/98 (6%)
Frame = -2
Query: 289 VREYSLACERRRSS----AIQGSKSEMQISWVKPPEGWIKVNTDGTVK--EGRVAAGGVL 128
V+E+++ R S I + E I WV P GW+KVNTDG + G +AGGVL
Sbjct: 422 VKEWAVEVYRAHSGNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVL 481
Query: 127 RNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDR 14
R+ G W GGF+ NIG C+ P+AEL G+ GL AW++
Sbjct: 482 RDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEK 519
>gb|EOY02376.1| LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like
protein [Theobroma cacao]
Length = 620
Score = 83.6 bits (205), Expect = 2e-14
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = -2
Query: 238 GSKSEMQISWVKPPEGWIKVNTDGTVKEGRVAA--GGVLRNSDGVWIGGFAHNIGCCTVP 65
G + E+ I W PP WI +N+DG K G+ A GGVLR+S+G WI G+ G T
Sbjct: 502 GRQEEILIGWAPPPVDWIALNSDGAYKSGKGVASVGGVLRHSNGSWIIGYGCKSGTSTAY 561
Query: 64 KAELLGIINGLKLAWDRGYR 5
+AEL G+ GLKLAWD GYR
Sbjct: 562 RAELWGVFQGLKLAWDHGYR 581
>gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 1011
Score = 82.0 bits (201), Expect = 7e-14
Identities = 39/78 (50%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Frame = -2
Query: 232 KSEMQISWVKPPEGWIKVNTDGTVKE--GRVAAGGVLRNSDGVWIGGFAHNIGCCTVPKA 59
+ E+ + W PPE WI VN+DG K G AAGGVLR+S G WI G+A + +V +A
Sbjct: 873 QEEILVGWSPPPEDWIAVNSDGAFKSAVGIAAAGGVLRDSHGTWIVGYACKLETSSVFRA 932
Query: 58 ELLGIINGLKLAWDRGYR 5
EL G+ GL+LAW+RG+R
Sbjct: 933 ELWGVYKGLQLAWERGFR 950
>gb|EOY00974.1| Uncharacterized protein TCM_010875 [Theobroma cacao]
Length = 180
Score = 81.3 bits (199), Expect = 1e-13
Identities = 38/73 (52%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = -2
Query: 217 ISWVKPPEGWIKVNTDGTVKEGR--VAAGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGI 44
+ WV PP WI +N+DG + R +AGGVLR+ DG WI G+A N G T +AEL G+
Sbjct: 27 VGWVSPPVDWIALNSDGAYRSRRGVASAGGVLRHLDGSWIMGYACNSGTSTAYRAELWGV 86
Query: 43 INGLKLAWDRGYR 5
GLKLAW+ GYR
Sbjct: 87 FQGLKLAWELGYR 99
>ref|XP_002324246.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 81.3 bits (199), Expect = 1e-13
Identities = 48/118 (40%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Frame = -2
Query: 349 NLVFNREEFHGDKAAF-IRHSVREYSLACERRRSSAIQGSKSEMQISWVKPPEGWIKVNT 173
N VF ++ + +A I+ VR+ +R + + SK + Q+ W P E IK+N
Sbjct: 30 NRVFGVDQGNWFRAILAIKRMVRDTEFT-QRHGNDEGRSSKEDTQVGWKYPQEERIKLNV 88
Query: 172 DGTVK--EGRVAAGGVLRNSDGVWIGGFAHNIGCCTVPKAELLGIINGLKLAWDRGYR 5
DG K G AGGV+R G WIGGFA NI C+ AEL + GL+LAWDRG+R
Sbjct: 89 DGCSKGNPGVAGAGGVIREHLGAWIGGFARNIDICSSVNAELWAVYVGLQLAWDRGFR 146
>gb|EOY02369.1| Kinase superfamily protein isoform 5 [Theobroma cacao]
Length = 432
Score = 80.9 bits (198), Expect = 2e-13
Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Frame = -2
Query: 232 KSEMQISWVKPPEGWIKVNTDGTVKEG--RVAAGGVLRNSDGVWIGGFAHNIGCCTVPKA 59
+ E+ I W P GW+ +NTDG K+ +AGGV+RN++G W GF +G C+ +A
Sbjct: 349 RKEVLIGWRAPQAGWVCLNTDGAYKKSIDEASAGGVIRNAEGEWRTGFVAKLGLCSAYRA 408
Query: 58 ELLGIINGLKLAWDRGYR 5
EL G+++GL+LAWD G++
Sbjct: 409 ELRGVLHGLRLAWDSGFK 426