BLASTX nr result

ID: Rheum21_contig00037321 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00037321
         (274 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY13548.1| RING/FYVE/PHD zinc finger superfamily protein, pu...    58   1e-06
ref|XP_002300454.1| PHD finger family protein [Populus trichocar...    57   2e-06
ref|XP_002331305.1| predicted protein [Populus trichocarpa] gi|5...    56   4e-06
gb|EXB74713.1| Protein Jade-1 [Morus notabilis]                        55   7e-06

>gb|EOY13548.1| RING/FYVE/PHD zinc finger superfamily protein, putative [Theobroma
           cacao]
          Length = 413

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
 Frame = +3

Query: 18  MDSKIQSLPPLKRFRLLHQQH-ESNEFSPSQ-----LPAKKRRESRDXXXXXXXXXXXXX 179
           MD + Q+LPP+KRFRL+ QQ+ E  EF+ S+     LPAKKR+ESRD             
Sbjct: 1   MDIRFQALPPVKRFRLMQQQNQEEEEFNSSKASSFCLPAKKRKESRD----------PPV 50

Query: 180 STAVMPLLPAKKRVWA 227
           +      LPAKKR+WA
Sbjct: 51  AETTTYCLPAKKRIWA 66


>ref|XP_002300454.1| PHD finger family protein [Populus trichocarpa]
           gi|222847712|gb|EEE85259.1| PHD finger family protein
           [Populus trichocarpa]
          Length = 347

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 37/73 (50%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
 Frame = +3

Query: 18  MDSKIQSLPPLKRFRLLHQ-QHESNEFSP--SQLPAKKRRESRDXXXXXXXXXXXXXSTA 188
           MD+K Q+LPPLKR RLL Q Q E+ E  P   QLPAKKR+ESR+             +T 
Sbjct: 1   MDTKFQALPPLKRHRLLQQHQQENKENVPIALQLPAKKRKESRN---PLLADAAPQVTTT 57

Query: 189 VMPLLPAKKRVWA 227
               LP KKRVWA
Sbjct: 58  AAYCLPTKKRVWA 70


>ref|XP_002331305.1| predicted protein [Populus trichocarpa]
           gi|566194772|ref|XP_002316962.2| PHD finger family
           protein [Populus trichocarpa]
           gi|550328090|gb|EEE97574.2| PHD finger family protein
           [Populus trichocarpa]
          Length = 329

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 35/74 (47%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
 Frame = +3

Query: 18  MDSKIQSLPPLKRFRLLHQQ----HESNEFSPSQLPAKKRRESRDXXXXXXXXXXXXXST 185
           MD+K Q+LPP KR  LL QQ    +E N    SQLPAKKR+ESR+             +T
Sbjct: 1   MDTKFQALPPFKRHTLLEQQQQQENEENVPFSSQLPAKKRKESRN---PLLADADPKGTT 57

Query: 186 AVMPLLPAKKRVWA 227
           +    LP KKRVWA
Sbjct: 58  SAAYCLPTKKRVWA 71


>gb|EXB74713.1| Protein Jade-1 [Morus notabilis]
          Length = 334

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 34/70 (48%), Positives = 37/70 (52%)
 Frame = +3

Query: 18  MDSKIQSLPPLKRFRLLHQQHESNEFSPSQLPAKKRRESRDXXXXXXXXXXXXXSTAVMP 197
           MD K   LPP KR RL+HQQ +   F  S LPAKKR E+RD             S     
Sbjct: 1   MDPKFNGLPPHKRLRLIHQQEQQPSF--SCLPAKKRTETRDPPALPDPKTEAIGSYC--- 55

Query: 198 LLPAKKRVWA 227
            LPAKKRVWA
Sbjct: 56  -LPAKKRVWA 64


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