BLASTX nr result
ID: Rheum21_contig00036788
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00036788
(1168 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 138 4e-30
gb|ABD96948.1| hypothetical protein [Cleome spinosa] 125 3e-26
ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665... 119 3e-24
ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661... 119 3e-24
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 119 3e-24
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 91 7e-24
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 115 3e-23
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664... 115 3e-23
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 91 3e-23
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 114 6e-23
ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663... 113 1e-22
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 112 4e-22
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 112 4e-22
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 110 1e-21
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 109 2e-21
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 107 7e-21
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 107 9e-21
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 106 2e-20
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 105 5e-20
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 102 2e-19
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 138 bits (348), Expect = 4e-30
Identities = 95/356 (26%), Positives = 156/356 (43%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
+KL+HL F DDL++F + D S+ + + FS S L +I K+ I+FGG C
Sbjct: 684 IKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQ 743
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
+ G+L YLGVP+ SKK ++ K+T++ + W LSY R++L++
Sbjct: 744 LADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVK 803
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLG 624
+LY +Q +W ++F PK +I + + + T + PK L
Sbjct: 804 TILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLN 863
Query: 623 LKNYSHGIEFLSPRQYSNFLLPTAPHQ*LMDRWDDSQYCLGTDVWEVPTKHLNSWNWKSL 444
+ N + + T L RW ++ Y ++ V SW + +
Sbjct: 864 VTNM---VLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIENVTVSSNTSWILRKI 920
Query: 443 LHVRDLFKARLDPQTLISQLYNSAGKYISSLAYDLIRDIMQPVFWGELIWTGLH*LKCSF 264
R+L R +S N + K Y L+++ + V W LI K F
Sbjct: 921 FESRELL-TRTGGWEAVSNHMNFSIK----KTYKLLQEDYENVVWKRLICNNKATPKSQF 975
Query: 263 TTWLALLERLPTKDKIRRWTNIAGDDLCALYGSKPETNAHIWTRCTFVKSTLQRVL 96
WLA+L RL T +++ RW N LC + G++ ET H++ C + K +VL
Sbjct: 976 ILWLAMLNRLATAERVSRW-NRDVSPLCKMCGNEIETIQHLFFNCIYSKEIWGKVL 1030
>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
Length = 539
Score = 125 bits (314), Expect = 3e-26
Identities = 98/368 (26%), Positives = 162/368 (44%), Gaps = 9/368 (2%)
Frame = -3
Query: 1157 LSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNIIM 978
++HL+F DD++IF G+ +S+ VK LD FS S L++N KT+IF G + +
Sbjct: 145 ITHLAFADDIMIFTSGETRSLLEVKNTLDSFSRASGLYLNTEKTEIFLRGLNGTEASTLC 204
Query: 977 GATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIRVV 798
F+ G L + YLGV + + D+ ++ ++ +K+ SWT +LSY R++L+ V
Sbjct: 205 AVIGFTRGYLPVRYLGVSLSPVRLTKSDYQPLLDRVKAKINSWTTRYLSYAGRLQLVGTV 264
Query: 797 LYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLGLK 618
+YG+ W +F+ PK L +G + +T P+ LGL+
Sbjct: 265 IYGMVNAWGMIFMLPKFFTKQVDRLCAGFLWG----AGTTHRVSWDTCCRPRKEGGLGLR 320
Query: 617 NYSHGIEF-LSPRQYSNFLLP----TAPHQ*LMDRWDDSQYCLGTDVWEVPTKHLNSWNW 453
+ EF P LL T P + + D W P +
Sbjct: 321 KIA---EFNQDPWTIYGSLLRYVGLTGPRSLRIPLPSSVSQAVAGDSWIFPGVRSDRLQ- 376
Query: 452 KSLLHVRDLFKARLD-PQTLISQLYNSAG---KYISSLAYDLIRDIMQPVFWGELIWTGL 285
+ L H+ + D P Y + SS ++L R + W ++W L
Sbjct: 377 QVLAHISTIPPPSPDGPSDSALWKYKEEDFRPYFSSSRTWNLTRTVHVIAPWSSIVWFPL 436
Query: 284 H*LKCSFTTWLALLERLPTKDKIRRWTNIAGDDLCALYGSKPETNAHIWTRCTFVKSTLQ 105
+ +F W +L RLPTKD++++W I D C L + E++ H++ CT+ S L
Sbjct: 437 AIPRHAFLHWQVMLFRLPTKDRLQQW-GITSDATCRLCDGEDESHQHLFFGCTYA-SHLW 494
Query: 104 RVLD*LAW 81
R + W
Sbjct: 495 RHFGEVCW 502
>ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665746 [Glycine max]
Length = 506
Score = 119 bits (297), Expect = 3e-24
Identities = 93/377 (24%), Positives = 170/377 (45%), Gaps = 1/377 (0%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
LK+++L F DDL++F +GD SV ++ + FS + L +N K + G ++K
Sbjct: 67 LKITNLCFADDLLLFSRGDKISVGMMMRAYESFSKATGLLVNPQKCSLLCAGIDAVTKRE 126
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
I+ + F EG L YLGVPV SKK ++ ++ K+ K++ WT LSY R++L+
Sbjct: 127 ILEVSGFQEGQLPFKYLGVPVTSKKLSTIHYSPLIDKIVGKIKHWTARLLSYAGRLQLVN 186
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLG 624
V++ + +W F FPK+V+ + + + P+ L
Sbjct: 187 SVMFALTNYWLNCFPFPKSVLQKIEAICRIFLWTGGFEGSRKSPVAWKQICSPRSCGGLN 246
Query: 623 LKNYSHGIEFLSPRQYSNFLLP-TAPHQ*LMDRWDDSQYCLGTDVWEVPTKHLNSWNWKS 447
+ + I+ + L ++ L +W + Y +++ + K+ +SW K+
Sbjct: 247 IID----IDIWNKANLMKLLWNLSSKEDSLWVKWIQAYYVKRSELMHIEMKNTDSWIMKA 302
Query: 446 LLHVRDLFKARLDPQTLISQLYNSAGKYISSLAYDLIRDIMQPVFWGELIWTGLH*LKCS 267
+L R+ + + + L+ + + GK Y ++D Q W L++ + +
Sbjct: 303 ILKQREDLEKIDNMEELMIRGSINMGK-----LYRKLQDCGQRKEWKNLLYGNTARPRAN 357
Query: 266 FTTWLALLERLPTKDKIRRWTNIAGDDLCALYGSKPETNAHIWTRCTFVKSTLQRVLD*L 87
F WLA RL TKD++ ++ I DD + S+ E+ H++ C K VL
Sbjct: 358 FILWLACHGRLSTKDRLCKYGMI--DDKSCCFCSEEESMNHLFFVCDNSKRVWMEVLQ-- 413
Query: 86 AWPSQSPQPSSFKDCLN 36
W PS + + L+
Sbjct: 414 -WVQIRHDPSDWPNELH 429
>ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661523 [Glycine max]
Length = 947
Score = 119 bits (297), Expect = 3e-24
Identities = 99/365 (27%), Positives = 168/365 (46%), Gaps = 8/365 (2%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
L ++HL+F DD+++F +GD SV ++ V++ FS + L +N +K +I+FGG +KN
Sbjct: 509 LGITHLTFADDVLLFCRGDVMSVEMMLHVINKFSATTGLVVNPNKCRIYFGGVDGTTKNK 568
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
I + + EG L + YLGVP+ SKK I + ++ K+T+++R WT L+ RV+++
Sbjct: 569 IQQISSYEEGQLPVRYLGVPLTSKKLNIKYYLPLIDKITTRIRHWTSKLLNMTGRVQMVN 628
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPK---VMA 633
+ I +FW + P +VI + + + + N+ PK +
Sbjct: 629 CTITAIVQFWMQCLPIPMSVIKKIDSMCRSFVWSRSTEITRKSPIAWNSVCRPKGQGGLN 688
Query: 632 VLGLKNYSHGIEFLS-----PRQYSNFLLPTAPHQ*LMDRWDDSQYCLGTDVWEVPTKHL 468
+ LK ++H I L+ ++ N L +W + Y + V +
Sbjct: 689 IFNLKVWNH-ITVLNCLWNLCKKVDN----------LWVKWIHAHYIKNSSVMNTMVTNN 737
Query: 467 NSWNWKSLLHVRDLFKARLDPQTLISQLYNSAGKYISSLAYDLIRDIMQPVFWGELIWTG 288
SW K++L R+ Q + +L NS ++ AYD + + V W L+
Sbjct: 738 FSWVLKNVLSQREYIHTL---QPVWDELLNSE-RFKMKKAYDKMME-ADRVHWSGLMRKN 792
Query: 287 LH*LKCSFTTWLALLERLPTKDKIRRWTNIAGDDLCALYGSKPETNAHIWTRCTFVKSTL 108
+ TTWLA RL TKD++ R+ I D + +L ET HI C
Sbjct: 793 CARPRAIHTTWLACHGRLGTKDRLVRFGMIT-DKIWSLCKEVEETQNHILFSCKVATDIW 851
Query: 107 QRVLD 93
VL+
Sbjct: 852 SNVLN 856
>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 119 bits (297), Expect = 3e-24
Identities = 99/348 (28%), Positives = 151/348 (43%), Gaps = 1/348 (0%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
L L+HLSF DDL++ G +S+ + V D F+ S L I++ K+ I+ G + +
Sbjct: 223 LSLTHLSFADDLMVLSDGKVRSIDGIVEVFDIFAKFSGLKISMEKSTIYLAGVTEDVYHE 282
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
I F G L + YLG+P+ +K+ D++ ++ + K+ +WT +LSY R+ LI
Sbjct: 283 IQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPLLEHIKKKIGTWTTRYLSYAGRLNLIT 342
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLG 624
VL+ I FW F P+ I + A + L P T PK LG
Sbjct: 343 SVLWSICNFWLAAFRLPRECIREIDKICSAFLWSGPDLNPRKTRVCWGDVCKPKQEGGLG 402
Query: 623 LKNYSHGIEFLSPRQYSNFLLPTAPHQ*LMDRWDDSQYCLGTDV-WEVPTKHLNSWNWKS 447
L++ E + + T L RW + QY L D W V T + N S
Sbjct: 403 LRSLKEMNEVSCLKLIWRIVSHTNS---LWVRWIE-QYLLKHDTFWSVQT----TTNMDS 454
Query: 446 LLHVRDLFKARLDPQTLISQLYNSAGKYISSLAYDLIRDIMQPVFWGELIWTGLH*LKCS 267
+ L++ R D K+ + ++ R+ PV W IW K S
Sbjct: 455 V-----LWRGRND---------EYMPKFSTRDTWNQTRNTSTPVTWHMGIWFAHATPKFS 500
Query: 266 FTTWLALLERLPTKDKIRRWTNIAGDDLCALYGSKPETNAHIWTRCTF 123
F WLA+ RL T DK+ +W N C L + ET H++ C +
Sbjct: 501 FCAWLAVQNRLSTGDKMLQW-NRRLSPTCVLCNNNIETRNHLFFSCCY 547
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 90.9 bits (224), Expect(2) = 7e-24
Identities = 47/135 (34%), Positives = 77/135 (57%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
L +SHL F DD+++F+ G S++ + LDDF++ S LH+N KT ++ G D + +
Sbjct: 691 LSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGT-DEVEAL 749
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
+ F L + YLG+P+ S+K +I + Y++ + RSW V LS+ RV+LI
Sbjct: 750 AISHYGFPISTLPIRYLGLPLMSRKLKISE-----YELVKRFRSWAVKSLSFAGRVQLIT 804
Query: 803 VVLYGIQKFWSKVFI 759
V+ G+ FW F+
Sbjct: 805 SVITGLVNFWMSTFV 819
Score = 47.8 bits (112), Expect(2) = 7e-24
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -2
Query: 750 GCHIKQIHAILRSFLWSGDSN-SKRNLISWKYLCRPKSDGGLGFKELLSWNRVSVAKAIL 574
GC +K+I ++ FLWSG + SK I+W +C PK++GG+G + WN+ + I
Sbjct: 823 GC-VKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVGLRRFTPWNKTFYLRFIW 881
Query: 573 KL 568
L
Sbjct: 882 PL 883
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 115 bits (289), Expect = 3e-23
Identities = 72/246 (29%), Positives = 119/246 (48%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
L LSHL F DDL++F GD SV + +F ++S L N+S++KIF G S +
Sbjct: 518 LNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDS 577
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
++ T+FS G + YLG+P+ + K R+ D + ++ ++ ++++SW LS+ R++LI+
Sbjct: 578 VLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQ 637
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLG 624
VL IQ +W+ I PK V+ + +AT + PK LG
Sbjct: 638 SVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLG 697
Query: 623 LKNYSHGIEFLSPRQYSNFLLPTAPHQ*LMDRWDDSQYCLGTDVWEVPTKHLNSWNWKSL 444
+K+ + L N + ++ W G W P + SWNW+ L
Sbjct: 698 IKDLHCWNKALMISHIWNLVSSSSN---FWTDWVKVYLLKGNSFWNAPLPSICSWNWRKL 754
Query: 443 LHVRDL 426
L +R+L
Sbjct: 755 LKIREL 760
>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
Length = 939
Score = 115 bits (288), Expect = 3e-23
Identities = 96/378 (25%), Positives = 173/378 (45%), Gaps = 2/378 (0%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
+K+++L F DDL++F +GD SV ++ + F LH+N SK I+ G K
Sbjct: 509 MKITNLCFADDLLLFSRGDIGSVQIMLDKFNTFLRSMGLHVNPSKCNIYCGSVDINVKEQ 568
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
++ + F EG + YLG+P+ SKK I + +++ K+ ++ W+ G LSY RV+LI+
Sbjct: 569 LLLISGFKEGKMPFRYLGIPLSSKKLNIKHYQVLIDKIVGRITHWSAGLLSYAGRVQLIQ 628
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSML--SFAHFYGLVILTPSATSSLGNTFADPKVMAV 630
V++ FW + PK VI + + SF I S + PK+
Sbjct: 629 SVIFATINFWMQCLPLPKFVIMRINAICRSFLWIGNSNISRKSPIA--WEKVCSPKINGG 686
Query: 629 LGLKNYSHGIEFLSPRQYSNFLLPTAPHQ*LMDRWDDSQYCLGTDVWEVPTKHLNSWNWK 450
L + N + + + N + L +W + Y G +W + K +SW
Sbjct: 687 LNIINLAIWNKISILKLLWNVCNKS---DNLWIKWLHTYYIRGQSIWSMVLKKSHSWIMS 743
Query: 449 SLLHVRDLFKARLDPQTLISQLYNSAGKYISSLAYDLIRDIMQPVFWGELIWTGLH*LKC 270
S++ +R L L Q+ + ++ Y++ + + + + W L+ L +
Sbjct: 744 SMMKLRPLL---LQYQSRMQDVFKMKKIYLA------LFEESEKMSWRTLMCNNLARPRA 794
Query: 269 SFTTWLALLERLPTKDKIRRWTNIAGDDLCALYGSKPETNAHIWTRCTFVKSTLQRVLD* 90
F W A RL +KD++ ++ + D CA + S E++ H++ C +K+ VL+
Sbjct: 795 LFCLWQACHFRLASKDRLIKF-GLNVDANCA-FCSSMESHEHLFFGCIELKTIWTAVLN- 851
Query: 89 LAWPSQSPQPSSFKDCLN 36
W PS++ + LN
Sbjct: 852 --WLQIIHMPSTWSEELN 867
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 90.9 bits (224), Expect(2) = 3e-23
Identities = 47/135 (34%), Positives = 77/135 (57%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
L +SHL F DD+++F+ G S++ + LDDF++ S LH+N KT ++ G D + +
Sbjct: 691 LSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGT-DEVEAL 749
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
+ F L + YLG+P+ S+K +I + Y++ + RSW V LS+ RV+LI
Sbjct: 750 AISHYGFPISTLPIRYLGLPLMSRKLKISE-----YELVKRFRSWAVKSLSFAGRVQLIT 804
Query: 803 VVLYGIQKFWSKVFI 759
V+ G+ FW F+
Sbjct: 805 SVITGLVNFWMSTFV 819
Score = 45.4 bits (106), Expect(2) = 3e-23
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -2
Query: 750 GCHIKQIHAILRSFLWSGDSN-SKRNLISWKYLCRPKSDGGLGFKELLSWNRVSVAKAIL 574
GC +K+I ++ FLWSG + SK I+W +C PK++GG+ + WN+ + I
Sbjct: 823 GC-VKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVALRRFTPWNKTFYLRFIW 881
Query: 573 KL 568
L
Sbjct: 882 PL 883
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 114 bits (286), Expect = 6e-23
Identities = 78/246 (31%), Positives = 122/246 (49%), Gaps = 2/246 (0%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
L++SHL F DD++IF+ G S++ + L+DF+ S L +N +KT+++ G S++
Sbjct: 587 LEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAG-LSQSESD 645
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
M + F G+L + YLG+P+ S+K I ++A ++ K+T++ SW V LS+ RV+L+
Sbjct: 646 SMASYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLA 705
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLG 624
V+ GI FW FI P I L + I + PK +G
Sbjct: 706 SVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIG 765
Query: 623 LKNYSHGIEFLSPRQYSNFLLPTAPHQ*LMDRWDDSQYCLG--TDVWEVPTKHLNSWNWK 450
L+ ++ L R L + L W Q+ LG T W P K +SWNWK
Sbjct: 766 LRRFAVSNRTLYLRM---IWLLFSNSGSLWVAW-HKQHSLGKSTSFWNQPEKPHDSWNWK 821
Query: 449 SLLHVR 432
LL +R
Sbjct: 822 CLLRLR 827
>ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663533 [Glycine max]
Length = 514
Score = 113 bits (283), Expect = 1e-22
Identities = 92/352 (26%), Positives = 154/352 (43%), Gaps = 2/352 (0%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGG-NCDMSKN 987
L ++HLSF DD+ + +GD KS+ ++ FS + L IN +K K+F GG NCD S
Sbjct: 170 LGITHLSFADDVFLLCRGDKKSIKMIIKAFSFFSKSTGLQINPAKCKVFCGGLNCD-SIQ 228
Query: 986 IIMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELI 807
+I T F EG L + YLGVP+ KK + + +V K+ K+R W+ LS R++L+
Sbjct: 229 VITKITGFEEGTLPVRYLGVPLSCKKLNVHHYLPLVEKIVGKIRHWSSKLLSIAGRIQLV 288
Query: 806 RVVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVL 627
R ++ I ++W VF PK VI + + + + P L
Sbjct: 289 RSIITAIAQYWMSVFPMPKKVIQKIDSICRSFIWSGSAEVKRKSLVAWKQVCKPARCGGL 348
Query: 626 GLKNYSHGIEFLSPRQYSNFLLP-TAPHQ*LMDRWDDSQYCLGTDVWEVPTKHLNSWNWK 450
L N +E + L + L +W + + G +V K ++W K
Sbjct: 349 NLIN----LELWNVTAMLKCLWNICSKEDNLWVKWIHAYFLKGDNVMSATIKSNSTWILK 404
Query: 449 SLLHVRDLFKARLDPQTLISQLYNSAGKYISSLAYDLIRDIMQPVFWGELIWTGLH*LKC 270
S++ R + Q + ++ + + +L+ D + W L+ +
Sbjct: 405 SVMKQRPQVN---NLQLVWIEMLRKRKFSMKQVYMELVED-HNKIDWFRLLRYNRARPRA 460
Query: 269 SFTTWLALLERLPTKDKIRRWTNIAGDDLCALYGSKPETNAHIWTRCTFVKS 114
+ T WLA RL TK +++ N+ LC+L + E H+ C K+
Sbjct: 461 NVTLWLACQNRLATKTRLKN-MNMIQCSLCSLCKEQDEDLDHLMFSCRVTKA 511
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 112 bits (279), Expect = 4e-22
Identities = 73/247 (29%), Positives = 120/247 (48%), Gaps = 1/247 (0%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
L +SHL F DD++IF+ G S++ + LDDF++ S L +N K+++F G D+S+ I
Sbjct: 550 LSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAG-LDLSERI 608
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
A F G + YLG+P+ +K RI D+ ++ K+++++RSW LS+ R +LI
Sbjct: 609 TSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLIS 668
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLG 624
V++G+ FW F+ PK I L + I ++ PK LG
Sbjct: 669 SVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLG 728
Query: 623 LKNYSHGIEFLSPRQ-YSNFLLPTAPHQ*LMDRWDDSQYCLGTDVWEVPTKHLNSWNWKS 447
+++ + L R + F T+ L +W W+V + W WK
Sbjct: 729 FRSFGEWNKTLLLRLIWVLFDRDTS----LWAQWQRHHRLGHASFWQVNALQTDPWTWKM 784
Query: 446 LLHVRDL 426
LL++R L
Sbjct: 785 LLNLRPL 791
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 112 bits (279), Expect = 4e-22
Identities = 73/247 (29%), Positives = 120/247 (48%), Gaps = 1/247 (0%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
L +SHL F DD++IF+ G S++ + LDDF++ S L +N K+++F G D+S+ I
Sbjct: 550 LSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAG-LDLSERI 608
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
A F G + YLG+P+ +K RI D+ ++ K+++++RSW LS+ R +LI
Sbjct: 609 TSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLIS 668
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLG 624
V++G+ FW F+ PK I L + I ++ PK LG
Sbjct: 669 SVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLG 728
Query: 623 LKNYSHGIEFLSPRQ-YSNFLLPTAPHQ*LMDRWDDSQYCLGTDVWEVPTKHLNSWNWKS 447
+++ + L R + F T+ L +W W+V + W WK
Sbjct: 729 FRSFGEWNKTLLLRLIWVLFDRDTS----LWAQWQRHHRLGHASFWQVNALQTDPWTWKM 784
Query: 446 LLHVRDL 426
LL++R L
Sbjct: 785 LLNLRPL 791
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 110 bits (275), Expect = 1e-21
Identities = 90/369 (24%), Positives = 152/369 (41%), Gaps = 6/369 (1%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
L ++HL F DDL++F + D S+ + + FS+ S L + K+ I+F G D +
Sbjct: 681 LNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETARE 740
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
+ H G L YLGVP+ SKK +V +T++ ++W LSY R++LI+
Sbjct: 741 LADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIK 800
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLG 624
+L +Q +W+ +F K VI + + + T T P A +
Sbjct: 801 SILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLW---------TGKTEETKKAPVAWATIQ 851
Query: 623 LKNYSHGIEFLSPRQYSNFLLPTA------PHQ*LMDRWDDSQYCLGTDVWEVPTKHLNS 462
G ++ + ++ + L RW S Y D+ V + +
Sbjct: 852 RPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTT 911
Query: 461 WNWKSLLHVRDLFKARLDPQTLISQLYNSAGKYISSLAYDLIRDIMQPVFWGELIWTGLH 282
W + ++ RD D + K+ AY I + + V W LI
Sbjct: 912 WILRKIVKARDHLSNIGDWDEIC-----IGDKFSMKKAYKKISENGERVRWRRLICNNYA 966
Query: 281 *LKCSFTTWLALLERLPTKDKIRRWTNIAGDDLCALYGSKPETNAHIWTRCTFVKSTLQR 102
K F W+ L ERLPT D+I RW + D L + ET H++ C++ +
Sbjct: 967 TPKSKFILWMMLHERLPTVDRISRW-GVQCDLNYRLCRNDGETIQHLFFSCSYSAGVWSK 1025
Query: 101 VLD*LAWPS 75
+ + +P+
Sbjct: 1026 ICYIMRFPN 1034
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 109 bits (272), Expect = 2e-21
Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 4/253 (1%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
L L+HL F DDL++F G +SV V + +F+ S LHI++ K+ ++ G ++++N
Sbjct: 269 LSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNN 328
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
I+ A F+ G L + YLG+P+ +K+ D++ ++ K+ SK+ SWT LSY R+ LI
Sbjct: 329 ILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALIN 388
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLG 624
V+ + FW + P I L A + L P + K LG
Sbjct: 389 SVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLG 448
Query: 623 LKNYSHGIEFLSPRQYSNFLL---PTAPHQ*LMDRWDDSQYCLGTDVWEVPTK-HLNSWN 456
+K+ L + S L + L W + W + L SW
Sbjct: 449 IKS------LLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWM 502
Query: 455 WKSLLHVRDLFKA 417
WK LL RD+ K+
Sbjct: 503 WKKLLKYRDVAKS 515
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 107 bits (268), Expect = 7e-21
Identities = 73/253 (28%), Positives = 115/253 (45%), Gaps = 4/253 (1%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
L L+HL F DDL++F G +SV V + DF+ S LHI++ K+ ++ ++++N
Sbjct: 838 LSLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLYLAEVSELNRNN 897
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
I+ A F+ G L + YLG P+ +K+ D++ ++ K+ SK+ SWT LSY R+ LI
Sbjct: 898 ILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALIN 957
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLG 624
V+ + FW + P I L A + L P + K LG
Sbjct: 958 SVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLG 1017
Query: 623 LKNYSHGIEFLSPRQYSNFLL---PTAPHQ*LMDRWDDSQYCLGTDVWEVPTK-HLNSWN 456
+K+ L + S L + L W + W + L SW
Sbjct: 1018 IKS------LLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWM 1071
Query: 455 WKSLLHVRDLFKA 417
WK LL+ RD+ K+
Sbjct: 1072 WKKLLNYRDVAKS 1084
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 107 bits (267), Expect = 9e-21
Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 3/186 (1%)
Frame = -3
Query: 1157 LSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFF-GGNCDMSKNII 981
++HLSF DD+++F G S+ + +LDDF S L IN KT++ GGN ++++
Sbjct: 692 ITHLSFADDVLVFSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLA 751
Query: 980 --MGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELI 807
+G TH G+L + YLGVP+ S+K R D+ +V ++ S+ SWT HLS+ R++L+
Sbjct: 752 DNLGITH---GSLPVRYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLL 808
Query: 806 RVVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVL 627
+ V+Y FW+ VFIFP + + A + + N PK L
Sbjct: 809 KSVIYSTINFWASVFIFPNQCLQKLEQMCNAFLWSGAPNSARGAKISWNIVCSPKEAGGL 868
Query: 626 GLKNYS 609
GLK S
Sbjct: 869 GLKRLS 874
Score = 58.2 bits (139), Expect = 6e-06
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = -2
Query: 759 FP*GCHIKQIHAILRSFLWSGDSNSKRNL-ISWKYLCRPKSDGGLGFKELLSWNRVSVAK 583
FP C ++++ + +FLWSG NS R ISW +C PK GGLG K L SWNR+ K
Sbjct: 825 FPNQC-LQKLEQMCNAFLWSGAPNSARGAKISWNIVCSPKEAGGLGLKRLSSWNRILALK 883
Query: 582 AI 577
I
Sbjct: 884 LI 885
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 106 bits (264), Expect = 2e-20
Identities = 72/246 (29%), Positives = 111/246 (45%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
L +SHL F DD++IF+ G S++ + LDDF++ S L +N K+ ++ G + N
Sbjct: 690 LSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLESNA 749
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
A F G L + YLG+P+ ++K RI ++ ++ K+T++ RSW LS+ R++LI
Sbjct: 750 -NAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLIS 808
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLG 624
V++G FW F+ PK I L + I PK LG
Sbjct: 809 SVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLG 868
Query: 623 LKNYSHGIEFLSPRQYSNFLLPTAPHQ*LMDRWDDSQYCLGTDVWEVPTKHLNSWNWKSL 444
L+ + LS R + L W + W V +SW WK L
Sbjct: 869 LRRLLEWNKTLSMRLIWRLFVAKDS---LWADWQHLHHLSRGSFWAVEGGQSDSWTWKRL 925
Query: 443 LHVRDL 426
L +R L
Sbjct: 926 LSLRPL 931
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 105 bits (261), Expect = 5e-20
Identities = 69/248 (27%), Positives = 114/248 (45%)
Frame = -3
Query: 1163 LKLSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNI 984
+++S L+F DDL+IF+ G S+ +K VL+ F N+S L +N K+ ++ G D K
Sbjct: 689 VRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKED 748
Query: 983 IMGATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIR 804
+ A F G YLG+P+ +K R D++ ++ K+ ++ W LS+ R++LI
Sbjct: 749 TL-AFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLIS 807
Query: 803 VVLYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLG 624
V+Y FW FI PK + + + +G I PK LG
Sbjct: 808 SVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLG 867
Query: 623 LKNYSHGIEFLSPRQYSNFLLPTAPHQ*LMDRWDDSQYCLGTDVWEVPTKHLNSWNWKSL 444
L+N+ + L+ R + A L W+ + + W +SW WK++
Sbjct: 868 LRNFWTWNKTLNLRL---IWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAI 924
Query: 443 LHVRDLFK 420
L +R L K
Sbjct: 925 LGLRPLAK 932
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 102 bits (255), Expect = 2e-19
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 1/247 (0%)
Frame = -3
Query: 1157 LSHLSFVDDLIIFWKGDFKSVYVVKMVLDDFSNMSRLHINISKTKIFFGGNCDMSKNIIM 978
L+HLSF DDL++ G +S+ + V D+F+ S L I++ K+ ++ G ++N +
Sbjct: 698 LTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVA 757
Query: 977 GATHFSEGALLMLYLGVPVGSKKPRICDFALVVYKMTSKVRSWTVGHLSYPSRVELIRVV 798
FS G L + YLG+P+ +K+ D ++ ++ ++ SWT LSY R+ LI V
Sbjct: 758 DRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSV 817
Query: 797 LYGIQKFWSKVFIFPKAVISSKSMLSFAHFYGLVILTPSATSSLGNTFADPKVMAVLGLK 618
L+ I FW F P+ I + A + + + + PK LGL+
Sbjct: 818 LWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLR 877
Query: 617 NYSHGIEFLSPRQYSNFLLPTAPHQ*LMDRWDDSQYCLGTDVWEV-PTKHLNSWNWKSLL 441
+ + + + + L +W D WEV T SW WK LL
Sbjct: 878 SLKEANDVCCLKLVWKIV---SHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLL 934
Query: 440 HVRDLFK 420
R++ K
Sbjct: 935 KYREVAK 941