BLASTX nr result
ID: Rheum21_contig00035955
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00035955
(368 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006470592.1| PREDICTED: pentatricopeptide repeat-containi... 108 7e-22
ref|XP_006446101.1| hypothetical protein CICLE_v10017659mg [Citr... 108 7e-22
emb|CBI16398.3| unnamed protein product [Vitis vinifera] 104 1e-20
gb|EMJ15469.1| hypothetical protein PRUPE_ppa026204mg [Prunus pe... 103 2e-20
ref|XP_002299231.1| pentatricopeptide repeat-containing family p... 100 2e-19
ref|XP_006393067.1| hypothetical protein EUTSA_v10011276mg [Eutr... 100 3e-19
ref|XP_006573426.1| PREDICTED: pentatricopeptide repeat-containi... 99 6e-19
ref|XP_006293787.1| hypothetical protein CARUB_v10022767mg [Caps... 99 6e-19
gb|EXB93290.1| hypothetical protein L484_015277 [Morus notabilis] 97 2e-18
gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Me... 96 6e-18
ref|XP_003605160.1| Pentatricopeptide repeat-containing protein ... 96 6e-18
ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 93 4e-17
ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containi... 93 4e-17
ref|NP_179827.1| pentatricopeptide repeat protein SLO1 [Arabidop... 93 4e-17
gb|ESW06850.1| hypothetical protein PHAVU_010G081900g [Phaseolus... 92 5e-17
gb|ESW06849.1| hypothetical protein PHAVU_010G081900g [Phaseolus... 92 5e-17
ref|XP_004506535.1| PREDICTED: pentatricopeptide repeat-containi... 87 2e-15
ref|XP_004250876.1| PREDICTED: pentatricopeptide repeat-containi... 82 7e-14
ref|XP_006356381.1| PREDICTED: pentatricopeptide repeat-containi... 80 2e-13
gb|EOY32615.1| Slow growth 1, putative [Theobroma cacao] 80 2e-13
>ref|XP_006470592.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Citrus sinensis]
Length = 661
Score = 108 bits (270), Expect = 7e-22
Identities = 56/89 (62%), Positives = 66/89 (74%)
Frame = +2
Query: 95 TRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDGL 274
TRS SPHK + T NWNTTH FVL NP+LFLLE+C S+S LKQIQ QMT TGLI G
Sbjct: 29 TRSLSPHKEEPT----NWNTTHVFVLQNPVLFLLEQCKSLSQLKQIQSQMTITGLISHGF 84
Query: 275 ASSRLVAFCALSDAGDLAHCYKILKFVPN 361
A SRL+AFCA+S++ +L +C KIL V N
Sbjct: 85 APSRLIAFCAISESKNLDYCTKILFNVQN 113
>ref|XP_006446101.1| hypothetical protein CICLE_v10017659mg [Citrus clementina]
gi|557548712|gb|ESR59341.1| hypothetical protein
CICLE_v10017659mg [Citrus clementina]
Length = 658
Score = 108 bits (270), Expect = 7e-22
Identities = 56/89 (62%), Positives = 66/89 (74%)
Frame = +2
Query: 95 TRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDGL 274
TRS SPHK + T NWNTTH FVL NP+LFLLE+C S+S LKQIQ QMT TGLI G
Sbjct: 29 TRSLSPHKEEPT----NWNTTHVFVLQNPVLFLLEQCKSLSQLKQIQSQMTITGLISHGF 84
Query: 275 ASSRLVAFCALSDAGDLAHCYKILKFVPN 361
A SRL+AFCA+S++ +L +C KIL V N
Sbjct: 85 APSRLIAFCAISESKNLDYCTKILFNVQN 113
>emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 104 bits (260), Expect = 1e-20
Identities = 56/96 (58%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Frame = +2
Query: 62 ERPSSPTAG-FSTRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQC 238
++PS P++ TR+ SPHK NWNT HSFVLSNP L LLE+C S+S LKQIQ
Sbjct: 16 QKPSLPSSRHIHTRALSPHKENPI----NWNTNHSFVLSNPFLSLLEKCKSISQLKQIQS 71
Query: 239 QMTTTGLILDGLASSRLVAFCALSDAGDLAHCYKIL 346
QM TGLI DG ASSRL+AFCA+S+ DL +C IL
Sbjct: 72 QMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNIL 107
>gb|EMJ15469.1| hypothetical protein PRUPE_ppa026204mg [Prunus persica]
Length = 684
Score = 103 bits (258), Expect = 2e-20
Identities = 55/86 (63%), Positives = 62/86 (72%)
Frame = +2
Query: 89 FSTRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILD 268
F TRS SPHK K NWNTTH V +NP+L LLE C SMS LKQIQ QM TGLI D
Sbjct: 24 FHTRSLSPHKHKPI----NWNTTHKSVQANPLLSLLETCKSMSQLKQIQSQMILTGLISD 79
Query: 269 GLASSRLVAFCALSDAGDLAHCYKIL 346
G ASSRL+AFCALS++ +L +C KIL
Sbjct: 80 GFASSRLIAFCALSESRNLDYCNKIL 105
>ref|XP_002299231.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|222846489|gb|EEE84036.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 668
Score = 100 bits (249), Expect = 2e-19
Identities = 51/89 (57%), Positives = 64/89 (71%)
Frame = +2
Query: 95 TRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDGL 274
+ S S HK T+ WNTTH++VLSNP+L LLE C S S LKQIQ QM TGLILDG
Sbjct: 31 SHSFSTHKSNPTS----WNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGF 86
Query: 275 ASSRLVAFCALSDAGDLAHCYKILKFVPN 361
ASSRL++FCA+S++ +L +C KIL + N
Sbjct: 87 ASSRLISFCAISESRNLDYCIKILNNLQN 115
>ref|XP_006393067.1| hypothetical protein EUTSA_v10011276mg [Eutrema salsugineum]
gi|557089645|gb|ESQ30353.1| hypothetical protein
EUTSA_v10011276mg [Eutrema salsugineum]
Length = 696
Score = 99.8 bits (247), Expect = 3e-19
Identities = 53/89 (59%), Positives = 63/89 (70%)
Frame = +2
Query: 95 TRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDGL 274
TRS H+ K NWN+THSFVL NP+L LLE+C S+ +LKQIQ QM TGLILD
Sbjct: 31 TRSLPHHREKPI----NWNSTHSFVLHNPLLSLLEKCISLLHLKQIQSQMIITGLILDSF 86
Query: 275 ASSRLVAFCALSDAGDLAHCYKILKFVPN 361
ASSRL+AFCALS+ L +C KIL+ V N
Sbjct: 87 ASSRLIAFCALSEPPYLDYCVKILRGVEN 115
>ref|XP_006573426.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 677
Score = 99.0 bits (245), Expect = 6e-19
Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
Frame = +2
Query: 95 TRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDGL 274
TRS SP+ A NWNT+HSFV NP+L LLERC S+ LKQIQ QM TGL+ DG
Sbjct: 28 TRSLSPY-----VKAINWNTSHSFVRKNPLLSLLERCKSLDQLKQIQAQMVLTGLVNDGF 82
Query: 275 ASSRLVAFCALSDAGDLAHCYKILKFV--PNL 364
A SRLVAFCALS++ L +C KIL ++ PN+
Sbjct: 83 AMSRLVAFCALSESRALEYCTKILYWIHEPNV 114
>ref|XP_006293787.1| hypothetical protein CARUB_v10022767mg [Capsella rubella]
gi|482562495|gb|EOA26685.1| hypothetical protein
CARUB_v10022767mg [Capsella rubella]
Length = 691
Score = 99.0 bits (245), Expect = 6e-19
Identities = 55/102 (53%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Frame = +2
Query: 65 RPSSPTAGFS---TRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQ 235
+PS +S TRS H+ K NWN+THSFVL NP+L LLE+C + +LKQIQ
Sbjct: 19 KPSRSLYSYSQRRTRSLPHHREKPI----NWNSTHSFVLHNPLLSLLEKCKLLFHLKQIQ 74
Query: 236 CQMTTTGLILDGLASSRLVAFCALSDAGDLAHCYKILKFVPN 361
QM TGLILD ASSRL+AFCALS++ L +C K+LK V N
Sbjct: 75 AQMVITGLILDPFASSRLIAFCALSESKFLDYCVKLLKGVEN 116
>gb|EXB93290.1| hypothetical protein L484_015277 [Morus notabilis]
Length = 684
Score = 97.4 bits (241), Expect = 2e-18
Identities = 53/89 (59%), Positives = 63/89 (70%)
Frame = +2
Query: 95 TRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDGL 274
TRS PHK K NWNTTH+ V SNP+L LLE S+S+LKQIQ +MT TGLI D
Sbjct: 29 TRSFPPHKQKPI----NWNTTHTLVQSNPLLSLLENSNSISHLKQIQARMTITGLISDPF 84
Query: 275 ASSRLVAFCALSDAGDLAHCYKILKFVPN 361
ASSRLVAFCALS++ +L +C KIL + N
Sbjct: 85 ASSRLVAFCALSESRNLDYCTKILLSLEN 113
>gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 95.5 bits (236), Expect = 6e-18
Identities = 46/78 (58%), Positives = 58/78 (74%)
Frame = +2
Query: 131 TTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDGLASSRLVAFCALS 310
T NWNTTHSFV NP+L +LERC S+ LKQIQ QM +TGLI +G A+SRLVAFCALS
Sbjct: 43 TKTINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALS 102
Query: 311 DAGDLAHCYKILKFVPNL 364
++ +L +C +IL + L
Sbjct: 103 ESKELDYCTRILYRIKEL 120
>ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 95.5 bits (236), Expect = 6e-18
Identities = 46/78 (58%), Positives = 58/78 (74%)
Frame = +2
Query: 131 TTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDGLASSRLVAFCALS 310
T NWNTTHSFV NP+L +LERC S+ LKQIQ QM +TGLI +G A+SRLVAFCALS
Sbjct: 43 TKTINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALS 102
Query: 311 DAGDLAHCYKILKFVPNL 364
++ +L +C +IL + L
Sbjct: 103 ESKELDYCTRILYRIKEL 120
>ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 92.8 bits (229), Expect = 4e-17
Identities = 49/90 (54%), Positives = 60/90 (66%)
Frame = +2
Query: 95 TRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDGL 274
TRS HK K T NWN +H + SNP+L LLE CTSM+ +K+I QM +TGLI DG
Sbjct: 32 TRSLPHHKDKPT----NWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGF 87
Query: 275 ASSRLVAFCALSDAGDLAHCYKILKFVPNL 364
A SRLVAFCA+S+ +L +C KIL NL
Sbjct: 88 ALSRLVAFCAISEWRNLDYCDKILNNAANL 117
>ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 92.8 bits (229), Expect = 4e-17
Identities = 49/90 (54%), Positives = 60/90 (66%)
Frame = +2
Query: 95 TRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDGL 274
TRS HK K T NWN +H + SNP+L LLE CTSM+ +K+I QM +TGLI DG
Sbjct: 32 TRSLPHHKDKPT----NWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGF 87
Query: 275 ASSRLVAFCALSDAGDLAHCYKILKFVPNL 364
A SRLVAFCA+S+ +L +C KIL NL
Sbjct: 88 ALSRLVAFCAISEWRNLDYCDKILNNAANL 117
>ref|NP_179827.1| pentatricopeptide repeat protein SLO1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein
[Arabidopsis thaliana] gi|18086349|gb|AAL57637.1|
At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis
thaliana] gi|330252206|gb|AEC07300.1| pentatricopeptide
repeat protein SLO1 [Arabidopsis thaliana]
Length = 681
Score = 92.8 bits (229), Expect = 4e-17
Identities = 50/89 (56%), Positives = 61/89 (68%)
Frame = +2
Query: 95 TRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDGL 274
TRS H+ K NWN+THSFVL NP+L LLE+C + +LKQIQ QM GLILD
Sbjct: 31 TRSLPHHRDKPI----NWNSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPF 86
Query: 275 ASSRLVAFCALSDAGDLAHCYKILKFVPN 361
ASSRL+AFCALS++ L + KILK + N
Sbjct: 87 ASSRLIAFCALSESRYLDYSVKILKGIEN 115
>gb|ESW06850.1| hypothetical protein PHAVU_010G081900g [Phaseolus vulgaris]
Length = 676
Score = 92.4 bits (228), Expect = 5e-17
Identities = 53/93 (56%), Positives = 64/93 (68%), Gaps = 3/93 (3%)
Frame = +2
Query: 95 TRSPSPH-KPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDG 271
TRS SP KP NWNT+HSFV +NP+L LLERC S+ LKQIQ QM TGLI D
Sbjct: 28 TRSLSPFVKP------INWNTSHSFVRNNPLLSLLERCQSLLQLKQIQAQMILTGLIDDS 81
Query: 272 LASSRLVAFCALSDAGDLAHCYKILKFV--PNL 364
A+SRLV FCALS++ L +C KIL ++ PN+
Sbjct: 82 FAASRLVTFCALSESQALEYCTKILYWIREPNV 114
>gb|ESW06849.1| hypothetical protein PHAVU_010G081900g [Phaseolus vulgaris]
Length = 578
Score = 92.4 bits (228), Expect = 5e-17
Identities = 53/93 (56%), Positives = 64/93 (68%), Gaps = 3/93 (3%)
Frame = +2
Query: 95 TRSPSPH-KPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDG 271
TRS SP KP NWNT+HSFV +NP+L LLERC S+ LKQIQ QM TGLI D
Sbjct: 28 TRSLSPFVKP------INWNTSHSFVRNNPLLSLLERCQSLLQLKQIQAQMILTGLIDDS 81
Query: 272 LASSRLVAFCALSDAGDLAHCYKILKFV--PNL 364
A+SRLV FCALS++ L +C KIL ++ PN+
Sbjct: 82 FAASRLVTFCALSESQALEYCTKILYWIREPNV 114
>ref|XP_004506535.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cicer arietinum]
Length = 675
Score = 87.4 bits (215), Expect = 2e-15
Identities = 44/68 (64%), Positives = 49/68 (72%)
Frame = +2
Query: 143 NWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTTTGLILDGLASSRLVAFCALSDAGD 322
NW TTHSFV NP L LLERC S+ LKQIQ QM TGLI + A+SRLVAFCALS +
Sbjct: 49 NWKTTHSFVRKNPFLSLLERCNSLVQLKQIQAQMVMTGLIDNSFAASRLVAFCALSQSRA 108
Query: 323 LAHCYKIL 346
L +C KIL
Sbjct: 109 LDYCTKIL 116
>ref|XP_004250876.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Solanum lycopersicum]
Length = 691
Score = 82.0 bits (201), Expect = 7e-14
Identities = 45/91 (49%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +2
Query: 92 STRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLE-RCTSMSNLKQIQCQMTTTGLILD 268
S+ S PH T + W T H FV +NP+L LLE +C M+ LKQI QM TG+ +
Sbjct: 27 SSSSKLPHY--KTKSPFKWRTNHVFVQTNPLLSLLETKCKYMNQLKQIHSQMILTGIFSN 84
Query: 269 GLASSRLVAFCALSDAGDLAHCYKILKFVPN 361
G ASSRL+AFCALS+ G+L +C KIL + N
Sbjct: 85 GFASSRLIAFCALSEKGNLDYCKKILYNMEN 115
>ref|XP_006356381.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Solanum tuberosum]
Length = 689
Score = 80.5 bits (197), Expect = 2e-13
Identities = 44/88 (50%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +2
Query: 101 SPSPHKPKSTTTAANWNTTHSFVLSNPILFLLE-RCTSMSNLKQIQCQMTTTGLILDGLA 277
S PH T + W T H FV +NP+L LLE +C M+ LKQI QM TG+ +G A
Sbjct: 28 SKLPHY--KTKSQFKWRTNHIFVQTNPLLSLLETKCKYMNQLKQIHSQMILTGIFSNGFA 85
Query: 278 SSRLVAFCALSDAGDLAHCYKILKFVPN 361
SSRL+AFCALS+ G+L +C KIL + N
Sbjct: 86 SSRLIAFCALSEKGNLDYCKKILYNMEN 113
>gb|EOY32615.1| Slow growth 1, putative [Theobroma cacao]
Length = 702
Score = 80.5 bits (197), Expect = 2e-13
Identities = 45/92 (48%), Positives = 56/92 (60%)
Frame = +2
Query: 71 SSPTAGFSTRSPSPHKPKSTTTAANWNTTHSFVLSNPILFLLERCTSMSNLKQIQCQMTT 250
SS RS P K + AN N TH+ +LSNP+L +L+ C S+ LKQIQ QMT
Sbjct: 25 SSSYCSLHARSLPPLKGRKPP--ANGNKTHALLLSNPVLSILQICKSLPQLKQIQAQMTI 82
Query: 251 TGLILDGLASSRLVAFCALSDAGDLAHCYKIL 346
G + D SSRL+AFCALS+ +L HC KIL
Sbjct: 83 KGSMSDWFFSSRLIAFCALSEHKNLDHCIKIL 114