BLASTX nr result
ID: Rheum21_contig00035241
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00035241
(336 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004292270.1| PREDICTED: putative ribonuclease H protein A... 73 4e-11
ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein A... 69 5e-10
gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana] 69 8e-10
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali... 69 8e-10
gb|EMJ15309.1| hypothetical protein PRUPE_ppa017108mg, partial [... 68 1e-09
gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao] 66 4e-09
ref|XP_006475107.1| PREDICTED: putative ribonuclease H protein A... 64 2e-08
ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein A... 63 4e-08
ref|XP_006490009.1| PREDICTED: putative ribonuclease H protein A... 63 5e-08
ref|XP_002512046.1| nucleic acid binding protein, putative [Rici... 63 5e-08
ref|XP_004253520.1| PREDICTED: putative ribonuclease H protein A... 62 6e-08
ref|XP_004247278.1| PREDICTED: putative ribonuclease H protein A... 62 6e-08
ref|YP_006666138.1| RnaseH (mitochondrion) [Malus domestica] gi|... 62 6e-08
ref|XP_006584399.1| PREDICTED: putative ribonuclease H protein A... 62 8e-08
ref|XP_004253445.1| PREDICTED: putative ribonuclease H protein A... 62 8e-08
ref|XP_006485141.1| PREDICTED: protein argonaute MEL1-like [Citr... 62 1e-07
gb|EOY16830.1| Uncharacterized protein TCM_035716 [Theobroma cacao] 62 1e-07
gb|EOY02376.1| LINE-type retrotransposon LIb DNA, Insertion at t... 61 1e-07
gb|EOY33238.1| Uncharacterized protein TCM_041190 [Theobroma cacao] 61 2e-07
ref|XP_004234854.1| PREDICTED: putative ribonuclease H protein A... 61 2e-07
>ref|XP_004292270.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 224
Score = 72.8 bits (177), Expect = 4e-11
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
WFKLN DG+ +CA G++R+ G+++ GF + G L+ E+ GLL G+EMA Q
Sbjct: 63 WFKLNVDGSLHKNTGIICARGVLRNDRGEWLNGFSAKLGIGQVLEAELWGLLKGMEMAWQ 122
Query: 183 LGIQRLEIEIDALEVLAMVTSV-DNPLPLHRDATVRIRSLLSSPRWQTYIKH 335
G LE+E+D+L + +V SV D+ PL+ T SL S W + H
Sbjct: 123 HGCNSLEVEVDSLVAVKLVLSVIDHLHPLYSLITNCQESL--SRNWNVSLIH 172
>ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 569
Score = 69.3 bits (168), Expect = 5e-10
Identities = 42/111 (37%), Positives = 59/111 (53%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
W LNTDGA+ G T A GL+RD G+++ GF G S E+ GL GL++A
Sbjct: 344 WCSLNTDGAHNRGGTST-AWGLIRDHMGRWLSGFGMMIGSCSITVAELWGLYQGLQLAWN 402
Query: 183 LGIQRLEIEIDALEVLAMVTSVDNPLPLHRDATVRIRSLLSSPRWQTYIKH 335
GI++L++EID+L VL +VT + + I+ L WQ I H
Sbjct: 403 SGIRKLQVEIDSLCVLQLVTKPSLEINHYAPLIQAIKDYLKMD-WQVSISH 452
>gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
Length = 253
Score = 68.6 bits (166), Expect = 8e-10
Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
WFKLNTDGA AGG+VRD +G + GF G SA E+ G +GL +A +
Sbjct: 92 WFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWE 151
Query: 183 LGIQRLEIEIDALEVLAMV-TSVDNPLPLHRDATVRIRSLLSSPRWQTYIKH 335
G+ +LE+EID+ V+ + T +D+ PL VR+ L S W I H
Sbjct: 152 RGVTQLEMEIDSEMVVGFLRTGIDDSHPL--SFLVRLCHGLLSKDWSVRISH 201
>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
gi|55978717|gb|AAV68820.1| hypothetical protein
AT1G17390 [Arabidopsis thaliana]
Length = 272
Score = 68.6 bits (166), Expect = 8e-10
Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
WFKLNTDGA AGG+VRD +G + GF G SA E+ G +GL +A +
Sbjct: 111 WFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWE 170
Query: 183 LGIQRLEIEIDALEVLAMV-TSVDNPLPLHRDATVRIRSLLSSPRWQTYIKH 335
G+ +LE+EID+ V+ + T +D+ PL VR+ L S W I H
Sbjct: 171 RGVTQLEMEIDSEMVVGFLRTGIDDSHPL--SFLVRLCHGLLSKDWSVRISH 220
>gb|EMJ15309.1| hypothetical protein PRUPE_ppa017108mg, partial [Prunus persica]
Length = 197
Score = 67.8 bits (164), Expect = 1e-09
Identities = 28/79 (35%), Positives = 49/79 (62%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
W+KLN DG+Y G + GG++R+Q G+++ GF + G ++ E+ L GLE+A +
Sbjct: 23 WYKLNVDGSYRSGSGCIAGGGVIRNQEGEWLSGFAANLGTGKVIEAELWALYRGLELAWK 82
Query: 183 LGIQRLEIEIDALEVLAMV 239
G+ +E+E D+ VL ++
Sbjct: 83 SGLAPIEVETDSTTVLKLM 101
>gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]
Length = 528
Score = 66.2 bits (160), Expect = 4e-09
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
W LNTDGAY + AGG+ R+ G + GFV+ G+ SA + E+ G+LHGL +A
Sbjct: 256 WVCLNTDGAYKRSIEEASAGGVKRNAEGDWQAGFVAKLGKCSAYRAELWGILHGLRLAWD 315
Query: 183 LGIQRLEIEIDALEVLAMVTSVDNPLP-LHRDATVRIRSLLSSPRWQTYIKH 335
G +++++++D +++ S D +P + D I+++L W+ H
Sbjct: 316 SGFKKVQVQVDN-KMVVQAISTDKLIPGANTDLISAIKNVLQK-EWEVSFMH 365
>ref|XP_006475107.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 246
Score = 63.9 bits (154), Expect = 2e-08
Identities = 38/111 (34%), Positives = 58/111 (52%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
W KLNTDGA D AGGL+RD G + G+ + G S E+ GL HGL +A
Sbjct: 86 WVKLNTDGAMKPSD-HAGAGGLIRDYRGVWQIGYCANLGFCSVTSAELWGLFHGLSIAWL 144
Query: 183 LGIQRLEIEIDALEVLAMVTSVDNPLPLHRDATVRIRSLLSSPRWQTYIKH 335
G +R+ +E+D+ +L +V+S + + H I+ L+ +W + H
Sbjct: 145 YGYRRVIVEVDSKCILQLVSSSNPTINEHLSLIKAIQELIGR-KWLIQMNH 194
>ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 684
Score = 63.2 bits (152), Expect = 4e-08
Identities = 42/111 (37%), Positives = 56/111 (50%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
W KLNTDG+ + AGG++RD G +I GF G S L E+ GL GL +A
Sbjct: 552 WCKLNTDGSCRKSEG-AGAGGILRDSVGHWISGFCLNIGESSVLMAELWGLYQGLRIAWD 610
Query: 183 LGIQRLEIEIDALEVLAMVTSVDNPLPLHRDATVRIRSLLSSPRWQTYIKH 335
GI+ L +E+D+L V M+ S +P V L S W+ YI H
Sbjct: 611 TGIKCLLVEVDSLCVTQMI-SKQVIVPNEFYTLVAAVQELVSRNWRIYITH 660
>ref|XP_006490009.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 171
Score = 62.8 bits (151), Expect = 5e-08
Identities = 38/108 (35%), Positives = 57/108 (52%)
Frame = +3
Query: 12 LNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQLGI 191
LNTDGA + AGGL+RD NG ++ GF G S L E+ GLLHGL++A G
Sbjct: 14 LNTDGA-MKRFGYAGAGGLLRDYNGNWLMGFTVNLGMCSVLSAELWGLLHGLKVAWDYGF 72
Query: 192 QRLEIEIDALEVLAMVTSVDNPLPLHRDATVRIRSLLSSPRWQTYIKH 335
+ L++ +D V+ ++ P + IR LL+ W +++H
Sbjct: 73 RHLQVGVDNKNVVLLLERAHPPANENAILVKTIRELLARD-WIVHMEH 119
>ref|XP_002512046.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223549226|gb|EEF50715.1| nucleic acid binding
protein, putative [Ricinus communis]
Length = 244
Score = 62.8 bits (151), Expect = 5e-08
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +3
Query: 9 KLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRS-ALQEEILGLLHGLEMAEQL 185
KLNTDGA D AGGL+RD G++I+GF G S +++ E+LGL+ GL++A ++
Sbjct: 86 KLNTDGAKRGEDGPAAAGGLIRDSRGRWIRGFKCYMGLGSTSVKAELLGLIEGLKLARKI 145
Query: 186 GIQRLEIEIDALEVLAMV 239
G ++L +E D V+ M+
Sbjct: 146 GCEKLIVETDNEGVVQMI 163
>ref|XP_004253520.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 468
Score = 62.4 bits (150), Expect = 6e-08
Identities = 30/81 (37%), Positives = 49/81 (60%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
W K+NTDG+ L + ++ AGG++RD+ GK I F + G S Q EI L GL A +
Sbjct: 298 WIKINTDGSALTNEGKIGAGGIIRDKEGKMIMAFSTPLGEGSNNQAEIEAALFGLTWAFE 357
Query: 183 LGIQRLEIEIDALEVLAMVTS 245
LG + + +E+D+ V+ +++
Sbjct: 358 LGFKNILLELDSQLVVQWISN 378
>ref|XP_004247278.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 213
Score = 62.4 bits (150), Expect = 6e-08
Identities = 30/81 (37%), Positives = 49/81 (60%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
W K+NTDG+ L + ++ AGG++RD+ GK I F + G S Q EI L GL A +
Sbjct: 43 WIKINTDGSALTNEGKIGAGGIIRDKEGKMIMAFSTPLGEGSNNQAEIEAALFGLTWAFE 102
Query: 183 LGIQRLEIEIDALEVLAMVTS 245
LG + + +E+D+ V+ +++
Sbjct: 103 LGFKNILLELDSQLVVQWISN 123
>ref|YP_006666138.1| RnaseH (mitochondrion) [Malus domestica]
gi|401661941|emb|CBX33402.1| rnaseH (mitochondrion)
[Malus domestica]
Length = 153
Score = 62.4 bits (150), Expect = 6e-08
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +3
Query: 57 AGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQLGIQRLEIEIDALEVLAM 236
AGGL+RD NG +I GF + G+ + E+ GL GL +A G + +E+E+D+ V+ +
Sbjct: 10 AGGLLRDNNGNWISGFTANLGKGKIIAAELWGLFFGLRLAWMRGFRSVEVEVDSATVVTL 69
Query: 237 VTSVDNPL-PLH 269
V DN L PLH
Sbjct: 70 VNQQDNSLHPLH 81
>ref|XP_006584399.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 470
Score = 62.0 bits (149), Expect = 8e-08
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
W+KLN+DG + GGL+RD+NG+++ GFV G SA + G+L G+ +A Q
Sbjct: 309 WYKLNSDGLKVGDSGGTGYGGLIRDENGRWVVGFVRNLGIASAYVAKSWGVLEGVTLARQ 368
Query: 183 LGIQRLEIEIDALEVL 230
GI LEI +D+ V+
Sbjct: 369 RGIDFLEINVDSKVVV 384
>ref|XP_004253445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 338
Score = 62.0 bits (149), Expect = 8e-08
Identities = 31/85 (36%), Positives = 48/85 (56%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
W K+NTDG+ L Q AGG++RD+ GK + F + G + E +L GL A +
Sbjct: 168 WIKINTDGSALTNPGQTGAGGILRDKEGKMVMAFATPLGEGTNNTAEAEAVLFGLSWALE 227
Query: 183 LGIQRLEIEIDALEVLAMVTSVDNP 257
LG + ++IE+DA V+ +T + P
Sbjct: 228 LGHRNIQIELDAQLVVKWITRKEVP 252
>ref|XP_006485141.1| PREDICTED: protein argonaute MEL1-like [Citrus sinensis]
Length = 907
Score = 61.6 bits (148), Expect = 1e-07
Identities = 32/68 (47%), Positives = 45/68 (66%)
Frame = +3
Query: 12 LNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQLGI 191
LNTDGA G+ + AGGL+RD +G FI GF + G S L+ E+ G+LHGL MA LG
Sbjct: 43 LNTDGAR-KGNGEASAGGLLRDCHGNFIHGFSAHLGVCSVLKAELWGVLHGLRMAWDLGY 101
Query: 192 QRLEIEID 215
+ +++ +D
Sbjct: 102 RHIQVGVD 109
>gb|EOY16830.1| Uncharacterized protein TCM_035716 [Theobroma cacao]
Length = 165
Score = 61.6 bits (148), Expect = 1e-07
Identities = 31/79 (39%), Positives = 45/79 (56%)
Frame = +3
Query: 6 FKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQL 185
FKLN DG+ +GG++RD G + GF G ++++Q E+L L GL +
Sbjct: 12 FKLNVDGSSKCNFQNATSGGILRDYTGSLVFGFYENFGVKNSIQAELLALYKGLILCRDY 71
Query: 186 GIQRLEIEIDALEVLAMVT 242
GI L IE+DAL V+ M+T
Sbjct: 72 GISHLWIEMDALVVIQMLT 90
>gb|EOY02376.1| LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like
protein [Theobroma cacao]
Length = 620
Score = 61.2 bits (147), Expect = 1e-07
Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
W LN+DGAY G GG++R NG +I G+ +G +A + E+ G+ GL++A
Sbjct: 518 WIALNSDGAYKSGKGVASVGGVLRHSNGSWIIGYGCKSGTSTAYRAELWGVFQGLKLAWD 577
Query: 183 LGIQRLEIEID-ALEVLAMVTSVDNPLPLHRDATVRIRSLLS 305
G +R+++++D + V A+ T +P + D I++LLS
Sbjct: 578 HGYRRIQVQVDNKIVVNALNTQATHPCS-NTDVIRAIKALLS 618
>gb|EOY33238.1| Uncharacterized protein TCM_041190 [Theobroma cacao]
Length = 152
Score = 60.8 bits (146), Expect = 2e-07
Identities = 30/79 (37%), Positives = 48/79 (60%)
Frame = +3
Query: 6 FKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQL 185
F LNTDGA+ G GL+R+ +G+++ GFV G +L ++LG+ GL +A++L
Sbjct: 74 FSLNTDGAFEFGSGHASVKGLIRNIDGEWVHGFVVNIGITDSLAAKLLGIREGLLLAKRL 133
Query: 186 GIQRLEIEIDALEVLAMVT 242
IQ +E+DA V+ +T
Sbjct: 134 QIQPFVVELDATMVVKFLT 152
>ref|XP_004234854.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 181
Score = 60.8 bits (146), Expect = 2e-07
Identities = 27/81 (33%), Positives = 50/81 (61%)
Frame = +3
Query: 3 WFKLNTDGAYLMGDTQVCAGGLVRDQNGKFIQGFVSTAGRRSALQEEILGLLHGLEMAEQ 182
W K+NTDG+ ++ + ++ AGG++RD+ GK + F + G S Q EI L G+ A +
Sbjct: 11 WIKINTDGSAIINEGKIGAGGIIRDKEGKLLMAFSTPLGEGSNNQAEIEATLFGMTWALE 70
Query: 183 LGIQRLEIEIDALEVLAMVTS 245
LG + + +E+D+ V+ +++
Sbjct: 71 LGFKNILLELDSQLVVQWISN 91