BLASTX nr result
ID: Rheum21_contig00035190
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00035190
(452 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] 78 1e-12
gb|AAK52121.1|AC079936_17 Putative retroelement [Oryza sativa Ja... 76 4e-12
gb|AFU25705.1| gag-pol precursor [Castanea mollissima] 75 7e-12
ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607... 75 1e-11
gb|AAX96029.1| retrotransposon protein, putative, unclassified [... 75 1e-11
gb|AAV32140.1| putative polyprotein [Oryza sativa Japonica Group] 75 1e-11
gb|ABA27027.1| TO70-3 [Taraxacum officinale] 74 3e-11
emb|CAE03267.1| OSJNBa0011J08.22 [Oryza sativa Japonica Group] g... 73 4e-11
gb|ABF94998.1| transposon protein, putative, unclassified [Oryza... 72 8e-11
emb|CAH67755.1| H0124E07.2 [Oryza sativa Indica Group] 72 8e-11
emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis] 72 1e-10
gb|AAO62321.1| putative GAG-POL precursor [Oryza sativa Japonica... 71 1e-10
emb|CAE01986.1| OSJNBb0033G08.2 [Oryza sativa Japonica Group] gi... 71 1e-10
gb|ABF96190.1| retrotransposon protein, putative, Ty3-gypsy subc... 71 1e-10
gb|AAT93843.1| putative polyprotein [Oryza sativa Japonica Group] 71 1e-10
emb|CAE05745.1| OSJNBb0017I01.25 [Oryza sativa Japonica Group] g... 71 1e-10
gb|ABA97858.1| retrotransposon protein, putative, unclassified [... 71 2e-10
gb|AAF03460.1|AC009992_2 putative reverse transcriptase, 5' part... 71 2e-10
gb|ABA93438.2| retrotransposon protein, putative, Ty3-gypsy subc... 70 2e-10
gb|ABA96243.2| retrotransposon protein, putative, unclassified [... 70 2e-10
>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
Length = 1103
Score = 78.2 bits (191), Expect = 1e-12
Identities = 37/88 (42%), Positives = 54/88 (61%)
Frame = -3
Query: 447 VRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSLQ 268
+R YQ+ R ++ VK+ F VGDYV+R+V N K GKL + EGPY + ++
Sbjct: 1016 IRIQNYQQAAARYYNSKVKSRPFFVGDYVLRRVFDNKKEEGAGKLGINWEGPYIITEVVR 1075
Query: 267 NGSYKLEDLDGKLVSCTWNALNLRKFYI 184
NG Y+L+DL+ V WN +NL+KFY+
Sbjct: 1076 NGVYRLKDLEDNPVKRPWNVINLKKFYV 1103
>gb|AAK52121.1|AC079936_17 Putative retroelement [Oryza sativa Japonica Group]
Length = 2079
Score = 76.3 bits (186), Expect = 4e-12
Identities = 36/89 (40%), Positives = 55/89 (61%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AVR +YQ+ + R H K ++ +GDYV+R+V T + KL P EGPY + +L
Sbjct: 1994 AVRAASYQQALRRYHEKRIRARILSIGDYVLRRVQTQ---AGRNKLSPKWEGPYTITQAL 2050
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G+YK+ D DG+ ++ +WN LRKFY+
Sbjct: 2051 RPGAYKIADGDGRELANSWNIDQLRKFYV 2079
>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
Length = 1106
Score = 75.5 bits (184), Expect = 7e-12
Identities = 36/88 (40%), Positives = 57/88 (64%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
+V+ +YQ+++ +++ K VK+ GD V+RKV+ + GKL + EGPYR+ S
Sbjct: 1018 SVKMGSYQQKLKQAYDKGVKSRPLVPGDLVLRKVVGTARNPAWGKLGTNWEGPYRITSVA 1077
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFY 187
G+Y+LEDLDG++V WN NLR++Y
Sbjct: 1078 GIGAYRLEDLDGRVVHRPWNVNNLRRYY 1105
>ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607673 [Citrus sinensis]
Length = 1866
Score = 74.7 bits (182), Expect = 1e-11
Identities = 36/88 (40%), Positives = 55/88 (62%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
A + Q+ VMR ++K+V+ F GD+V+R+V NT+ G L P EGPYRV+ +
Sbjct: 1778 AQKVAQCQQRVMRYYNKNVRVRQFRAGDWVLRRVNQNTRNPNHGALGPKWEGPYRVIRAT 1837
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFY 187
G+YKL DG+ V +WNA +L+K++
Sbjct: 1838 GPGAYKLAYQDGRDVKRSWNAEHLKKYF 1865
>gb|AAX96029.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|77549917|gb|ABA92714.1| transposon
protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1058
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/89 (38%), Positives = 57/89 (64%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AVR +YQ+ + R + K +K + +GDYV+R+V + ++ KL P EGPY + L
Sbjct: 966 AVRAASYQQALRRYYEKRIKARTLSIGDYVLRRVQSQAGHN---KLSPKWEGPYMITQVL 1022
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G++K+ D+DG+ ++ +WN LRKFY+
Sbjct: 1023 RPGAFKIADVDGRELANSWNIDQLRKFYV 1051
>gb|AAV32140.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 74.7 bits (182), Expect = 1e-11
Identities = 35/89 (39%), Positives = 55/89 (61%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AVR +YQ+ + R H K ++ H +GDYV+++V + + KL P EGPY + L
Sbjct: 1217 AVRAASYQQALRRYHEKRIQAHILSIGDYVLQRVQSQ---AGRNKLSPKWEGPYTITQVL 1273
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
Q G++K+ D DG+ ++ +WN LRKFY+
Sbjct: 1274 QPGAFKIADGDGRELANSWNIDQLRKFYV 1302
>gb|ABA27027.1| TO70-3 [Taraxacum officinale]
Length = 97
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/83 (39%), Positives = 53/83 (63%)
Frame = -3
Query: 447 VRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSLQ 268
+R A+Q+ + S++K+++ F++GD V+RK NTK +GKL P EGPY + S
Sbjct: 15 LRIAAHQQRIANSYNKNIRIRRFQIGDLVLRKTFQNTKDPADGKLAPKWEGPYVINSKAG 74
Query: 267 NGSYKLEDLDGKLVSCTWNALNL 199
G Y L D++G L+ +WNA++L
Sbjct: 75 KGVYWLADMEGTLLPRSWNAIHL 97
>emb|CAE03267.1| OSJNBa0011J08.22 [Oryza sativa Japonica Group]
gi|38345859|emb|CAD41156.2| OSJNBa0064M23.1 [Oryza
sativa Japonica Group]
Length = 586
Score = 72.8 bits (177), Expect = 4e-11
Identities = 34/89 (38%), Positives = 55/89 (61%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AVR +YQ+ + R H K ++ + +GDYV+R+V + + KL P EGPY + L
Sbjct: 501 AVRAASYQQALHRYHEKRIRARTLSIGDYVLRRVQSQ---AGRNKLSPKWEGPYTITQVL 557
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G++K+ D DG+ ++ +WN LRKFY+
Sbjct: 558 RPGAFKIADGDGRELANSWNIDQLRKFYV 586
>gb|ABF94998.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 977
Score = 72.0 bits (175), Expect = 8e-11
Identities = 34/89 (38%), Positives = 54/89 (60%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AVR +YQ+ + R H K ++ +GDYV+R+V + + KL P EGPY + L
Sbjct: 892 AVRAASYQQTLRRYHEKRIRARILSIGDYVLRRVQSQ---AGRNKLSPKWEGPYTITQVL 948
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G++K+ D DG+ ++ +WN LRKFY+
Sbjct: 949 RPGAFKIADGDGRELANSWNIDQLRKFYV 977
>emb|CAH67755.1| H0124E07.2 [Oryza sativa Indica Group]
Length = 453
Score = 72.0 bits (175), Expect = 8e-11
Identities = 32/89 (35%), Positives = 56/89 (62%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AV+ +YQ+ + + H K ++ H+ +GDYV+R+V + + +L P EGPY + L
Sbjct: 368 AVKVASYQQALRQYHEKRIRAHTLSIGDYVLRRVQSQ---AGRNELSPKWEGPYTITQVL 424
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G++K+ D DG+ ++ +WN LRKFY+
Sbjct: 425 RPGAFKIADGDGRELANSWNIDQLRKFYV 453
>emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis]
Length = 2097
Score = 71.6 bits (174), Expect = 1e-10
Identities = 38/88 (43%), Positives = 53/88 (60%)
Frame = -3
Query: 447 VRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSLQ 268
VR+ YQ+ + R HS+ V+ S VGD V+RK+ + T KL P EGPY VV +
Sbjct: 2013 VRSAVYQQAMRRYHSRKVQPRSLAVGDLVLRKIQSQTN---RNKLSPKWEGPYTVVEVTR 2069
Query: 267 NGSYKLEDLDGKLVSCTWNALNLRKFYI 184
GS +L DG+++S +WN LRKFY+
Sbjct: 2070 PGSVRLAMSDGQILSNSWNIDQLRKFYV 2097
>gb|AAO62321.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1665
Score = 71.2 bits (173), Expect = 1e-10
Identities = 34/89 (38%), Positives = 53/89 (59%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AVR +YQ+ + R H K ++ +GDYV R+V + + KL P EGPY + L
Sbjct: 1580 AVRAASYQQTLRRYHEKRIRARILSIGDYVFRRVQSQ---AGRNKLTPKWEGPYTITQVL 1636
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G++K+ D DG+ ++ +WN LRKFY+
Sbjct: 1637 RPGAFKIADGDGRELANSWNIDQLRKFYV 1665
>emb|CAE01986.1| OSJNBb0033G08.2 [Oryza sativa Japonica Group]
gi|38346047|emb|CAD39751.2| OSJNBa0059D20.19 [Oryza
sativa Japonica Group]
Length = 581
Score = 71.2 bits (173), Expect = 1e-10
Identities = 33/89 (37%), Positives = 55/89 (61%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AVR +YQ+ + + H K ++ H+ +GDYV+R+V + + +L P EGPY + L
Sbjct: 496 AVRVASYQQALRQYHEKRIRAHTLSIGDYVLRRVQSQ---AGRNELSPKWEGPYTITQVL 552
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G++K+ D DG ++ +WN LRKFY+
Sbjct: 553 RPGAFKIADGDGCELANSWNIDQLRKFYV 581
>gb|ABF96190.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1602
Score = 71.2 bits (173), Expect = 1e-10
Identities = 34/89 (38%), Positives = 53/89 (59%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AVR +YQ+ + R H K ++ +GDYV R+V + + KL P EGPY + L
Sbjct: 1517 AVRAASYQQTLRRYHEKRIRARILSIGDYVFRRVQSQ---AGRNKLTPKWEGPYTITQVL 1573
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G++K+ D DG+ ++ +WN LRKFY+
Sbjct: 1574 RPGAFKIADGDGRELANSWNIDQLRKFYV 1602
>gb|AAT93843.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1723
Score = 71.2 bits (173), Expect = 1e-10
Identities = 33/89 (37%), Positives = 55/89 (61%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AVR +YQ+ + R H K ++ + +GDYV+R+V + + KL P EGPY + L
Sbjct: 1638 AVRAASYQQALRRYHEKRIRARTLSIGDYVLRRVQSQ---AGRNKLSPKWEGPYMITQVL 1694
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G++K+ + DG+ ++ +WN LRKFY+
Sbjct: 1695 RPGAFKIANGDGRELANSWNIDQLRKFYV 1723
>emb|CAE05745.1| OSJNBb0017I01.25 [Oryza sativa Japonica Group]
gi|32488627|emb|CAE03420.1| OSJNBa0032F06.3 [Oryza sativa
Japonica Group]
Length = 1728
Score = 71.2 bits (173), Expect = 1e-10
Identities = 33/89 (37%), Positives = 55/89 (61%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AVR +YQ+ + R H K ++ +GDYV+R+V + + + KL P EGPY + L
Sbjct: 1643 AVRAASYQQTLRRYHEKRIRARILSIGDYVLRRVQSQ---AGQNKLSPKWEGPYTITQVL 1699
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G++K+ D DG+ ++ +WN LRKF++
Sbjct: 1700 RPGAFKIADGDGRELANSWNIDQLRKFFV 1728
>gb|ABA97858.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 372
Score = 70.9 bits (172), Expect = 2e-10
Identities = 35/89 (39%), Positives = 54/89 (60%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
A+R AYQ+ + R H K ++ + +GDYV+R+V + KL P+ EGPY V L
Sbjct: 287 AIRAAAYQQALRRYHEKRIRARTLTIGDYVLRRVQNQ---AGRNKLSPEWEGPYPVERVL 343
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G++K+ D D + +S +WN LRKFY+
Sbjct: 344 RPGAFKIADGDVRELSNSWNIDQLRKFYV 372
>gb|AAF03460.1|AC009992_2 putative reverse transcriptase, 5' partial [Arabidopsis thaliana]
Length = 177
Score = 70.9 bits (172), Expect = 2e-10
Identities = 33/88 (37%), Positives = 53/88 (60%)
Frame = -3
Query: 447 VRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSLQ 268
+R YQ+ R ++ + + F +GDYV+++V N K GKL + EGPY V ++
Sbjct: 90 IRIQNYQQAAARYYNSKINSRPFFMGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVR 149
Query: 267 NGSYKLEDLDGKLVSCTWNALNLRKFYI 184
NG + L+DL+ + V WN +NL+KFY+
Sbjct: 150 NGVFGLKDLEDRPVKRPWNMVNLKKFYV 177
>gb|ABA93438.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1129
Score = 70.5 bits (171), Expect = 2e-10
Identities = 33/89 (37%), Positives = 54/89 (60%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AVR +YQ+ + R H K ++ + +GDYV+R+V + + KL P EGPY + L
Sbjct: 1044 AVRAASYQQALRRYHEKRIQARTLSIGDYVLRRVQSQ---AGRNKLSPKWEGPYTITQVL 1100
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G++K+ DG+ ++ +WN LRKFY+
Sbjct: 1101 RPGAFKIASGDGRELANSWNIDQLRKFYV 1129
>gb|ABA96243.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1419
Score = 70.5 bits (171), Expect = 2e-10
Identities = 34/89 (38%), Positives = 53/89 (59%)
Frame = -3
Query: 450 AVRTTAYQREVMRSHSKHVKTHSFEVGDYVIRKVLTNTKYSTEGKL*PDREGPYRVVSSL 271
AVR +YQ+ + R H K ++ +GDYV+R+V T + KL P EGPY + L
Sbjct: 1334 AVRAASYQQALRRYHEKRIRARILSIGDYVLRRVQTQ---AGRNKLSPKWEGPYTITQVL 1390
Query: 270 QNGSYKLEDLDGKLVSCTWNALNLRKFYI 184
+ G++K+ D DG+ ++ +WN L KFY+
Sbjct: 1391 RPGAFKIADGDGRELANSWNIDQLCKFYV 1419