BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00034664
         (262 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001931967.1| replicase [Eupatorium vein clearing virus] g...    78   1e-12
sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Inclu...    67   2e-09
sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Inclu...    67   2e-09
gb|AGT42189.1| reverse transcriptase [Cauliflower mosaic virus]        67   2e-09
gb|AGT42182.1| reverse transcriptase [Cauliflower mosaic virus]        67   2e-09
gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus]        67   2e-09
gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus] ...    67   2e-09
gb|AGT42140.1| reverse transcriptase [Cauliflower mosaic virus]        67   2e-09
gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus]        67   2e-09
gb|AGT42105.1| reverse transcriptase [Cauliflower mosaic virus]        67   2e-09
gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus] ...    67   2e-09
gb|AGT42091.1| reverse transcriptase [Cauliflower mosaic virus]        67   2e-09
gb|AGT42077.1| reverse transcriptase [Cauliflower mosaic virus]        67   2e-09
gb|AGT42070.1| reverse transcriptase [Cauliflower mosaic virus] ...    67   2e-09
gb|AGT42063.1| reverse transcriptase [Cauliflower mosaic virus] ...    67   2e-09
gb|AGT42056.1| reverse transcriptase [Cauliflower mosaic virus] ...    67   2e-09
gb|ABY66595.1| reverse transcriptase [Cauliflower mosaic virus]        67   2e-09
gb|AAA46350.1| ORF5; putative [Cauliflower mosaic virus]               67   2e-09
ref|NP_042513.1| reverse transcriptase [Peanut chlorotic streak ...    67   2e-09
sp|Q00962.1|POL_CAMVN RecName: Full=Enzymatic polyprotein; Inclu...    67   2e-09

>ref|YP_001931967.1| replicase [Eupatorium vein clearing virus]
           gi|172041764|gb|ACB69773.1| replicase [Eupatorium vein
           clearing virus]
          Length = 674

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 35/80 (43%), Positives = 54/80 (67%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N+KE LA+++ I+ F ++L P +FIV+TDN  +   +  K  +G +  ++ RWQ++F  +
Sbjct: 590 NEKEILAVIRSIQSFPVYLTPVEFIVRTDNKTMEHFLTSKFELGTKSGRLVRWQMWFKHY 649

Query: 78  NFAIESIKGKDNFLADLLSR 19
           NF +E IKG  NFLAD LSR
Sbjct: 650 NFKVEHIKGTSNFLADYLSR 669


>sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Includes: RecName:
           Full=Aspartic protease; Includes: RecName:
           Full=Endonuclease; Includes: RecName: Full=Reverse
           transcriptase gi|293185|gb|AAA62375.1| reverse
           transcriptase [Cauliflower mosaic virus]
          Length = 679

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 593 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 652

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 653 SFDVEHIKGTDNHFADFLSR 672


>sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Includes: RecName:
           Full=Aspartic protease; Includes: RecName:
           Full=Endonuclease; Includes: RecName: Full=Reverse
           transcriptase
          Length = 674

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 588 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 647

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 648 SFDVEHIKGTDNHFADFLSR 667


>gb|AGT42189.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|AGT42182.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus]
           gi|530722499|gb|AGT42154.1| reverse transcriptase
           [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|AGT42140.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|AGT42105.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus]
           gi|530722467|gb|AGT42126.1| reverse transcriptase
           [Cauliflower mosaic virus] gi|530722475|gb|AGT42133.1|
           reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|AGT42091.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|AGT42077.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|AGT42070.1| reverse transcriptase [Cauliflower mosaic virus]
           gi|530722547|gb|AGT42196.1| reverse transcriptase
           [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|AGT42063.1| reverse transcriptase [Cauliflower mosaic virus]
           gi|530722459|gb|AGT42119.1| reverse transcriptase
           [Cauliflower mosaic virus] gi|530722507|gb|AGT42161.1|
           reverse transcriptase [Cauliflower mosaic virus]
           gi|530722515|gb|AGT42168.1| reverse transcriptase
           [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|AGT42056.1| reverse transcriptase [Cauliflower mosaic virus]
           gi|530722419|gb|AGT42084.1| reverse transcriptase
           [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>gb|ABY66595.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 588 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 647

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 648 SFDVEHIKGTDNHFADFLSR 667


>gb|AAA46350.1| ORF5; putative [Cauliflower mosaic virus]
          Length = 675

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 589 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 648

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 649 SFDVEHIKGTDNHFADFLSR 668


>ref|NP_042513.1| reverse transcriptase [Peanut chlorotic streak virus]
           gi|555885|gb|AAA50240.1| reverse transcriptase [Peanut
           chlorotic streak virus]
          Length = 694

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 33/81 (40%), Positives = 50/81 (61%)
 Frame = -2

Query: 261 INQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSE 82
           +++KE LA +  +KKFQ+ L P KFI QTDN+ V+  +  K        ++ RW +F  +
Sbjct: 607 VHEKELLAFVNALKKFQIDLRPVKFIFQTDNSWVQGFLVNKLKETYNRGRLARWSMFIQQ 666

Query: 81  FNFAIESIKGKDNFLADLLSR 19
           F+F    I GK+N+LAD L+R
Sbjct: 667 FDFISLHIAGKENYLADTLTR 687


>sp|Q00962.1|POL_CAMVN RecName: Full=Enzymatic polyprotein; Includes: RecName:
           Full=Aspartic protease; Includes: RecName:
           Full=Endonuclease; Includes: RecName: Full=Reverse
           transcriptase gi|331571|gb|AAA46358.1| reverse
           transcriptase [Cauliflower mosaic virus]
           gi|445598|prf||1909346E reverse transcriptase
          Length = 680

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -2

Query: 258 NQKECLAILKGIKKFQLFLYPKKFIVQTDNTQVRALIFGKQGIGPQCKKIHRWQVFFSEF 79
           N KE LA++  IKKF ++L P  F+++TDNT  ++ +        +  +  RWQ + S +
Sbjct: 594 NDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 653

Query: 78  NFAIESIKGKDNFLADLLSR 19
           +F +E IKG DN  AD LSR
Sbjct: 654 SFDVEHIKGTDNHFADFLSR 673