BLASTX nr result
ID: Rheum21_contig00034648
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00034648
(336 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 74 2e-11
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 72 8e-11
gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana] 69 5e-10
gb|AAF79665.1|AC022314_6 F9C16.13 [Arabidopsis thaliana] 68 1e-09
gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana] 67 2e-09
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali... 67 2e-09
gb|ABK28199.1| unknown [Arabidopsis thaliana] 66 4e-09
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 66 4e-09
gb|AAC67202.1| hypothetical protein [Arabidopsis thaliana] 66 4e-09
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali... 66 5e-09
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 65 7e-09
gb|AAF79682.1|AC022314_23 F9C16.18 [Arabidopsis thaliana] 65 1e-08
gb|AAG12669.1|AC027033_4 hypothetical protein; 81517-79153 [Arab... 65 1e-08
gb|ABK28246.1| unknown [Arabidopsis thaliana] 64 2e-08
gb|ABE65516.1| hypothetical protein At4g08860 [Arabidopsis thali... 64 2e-08
gb|ABW81036.1| unknown [Arabidopsis lyrata subsp. lyrata] 64 2e-08
gb|AAD49762.2|AC007932_10 F11A17.8 [Arabidopsis thaliana] 64 3e-08
gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana] 62 6e-08
ref|XP_002516183.1| conserved hypothetical protein [Ricinus comm... 62 8e-08
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 62 1e-07
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 73.9 bits (180), Expect = 2e-11
Identities = 35/79 (44%), Positives = 47/79 (59%)
Frame = -3
Query: 310 VDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSAS 131
+ + H LS LV CQGFF RDW ++ H+YREAN +AD LA+ A PLG+H
Sbjct: 891 ISKAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFFLPLGFHCFEICPED 950
Query: 130 VAPFILDDFRGRALPRMTL 74
V F+++D G + PR L
Sbjct: 951 VLLFLVEDANGTSFPRAVL 969
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 72.0 bits (175), Expect = 8e-11
Identities = 36/79 (45%), Positives = 44/79 (55%)
Frame = -3
Query: 310 VDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSAS 131
V H LS LV CQGFF RDW ++ H+YREAN +AD LA+ A + PLG H +
Sbjct: 1152 VSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEG 1211
Query: 130 VAPFILDDFRGRALPRMTL 74
V +L D G PR L
Sbjct: 1212 VRLLLLADVNGTEFPRAVL 1230
>gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]
Length = 233
Score = 69.3 bits (168), Expect = 5e-10
Identities = 33/73 (45%), Positives = 44/73 (60%)
Frame = -3
Query: 298 HLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSASVAPF 119
H LS LV C GF RDW ++ H+YREAN +AD LA+ A PLG+H S S+
Sbjct: 158 HPLSFLVRMCHGFLSRDWIVRIGHVYREANRLADGLANYAFDLPLGYHAFASPPNSLDSI 217
Query: 118 ILDDFRGRALPRM 80
+ DD G ++PR+
Sbjct: 218 LRDDELGISVPRL 230
>gb|AAF79665.1|AC022314_6 F9C16.13 [Arabidopsis thaliana]
Length = 1172
Score = 67.8 bits (164), Expect = 1e-09
Identities = 35/81 (43%), Positives = 43/81 (53%)
Frame = -3
Query: 319 KGAVDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSF 140
K V H LS LV C GF +DW ++ H+YREAN +AD LA+ A P+G H+ S
Sbjct: 269 KTGVSERHPLSFLVRLCHGFLSKDWIVRISHVYREANRLADGLANYAFLLPIGIHVFVSV 328
Query: 139 SASVAPFILDDFRGRALPRMT 77
V P DD G A R T
Sbjct: 329 PDVVEPLFSDDVIGSARLRRT 349
>gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
Length = 253
Score = 67.4 bits (163), Expect = 2e-09
Identities = 33/76 (43%), Positives = 43/76 (56%)
Frame = -3
Query: 310 VDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSAS 131
+D H LS LV C G +DW ++ H+YREAN +AD LA+ A PLG+H+ S
Sbjct: 174 IDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDI 233
Query: 130 VAPFILDDFRGRALPR 83
V + DD G A PR
Sbjct: 234 VMSIVHDDVAGSAYPR 249
>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
gi|55978717|gb|AAV68820.1| hypothetical protein
AT1G17390 [Arabidopsis thaliana]
Length = 272
Score = 67.4 bits (163), Expect = 2e-09
Identities = 33/76 (43%), Positives = 43/76 (56%)
Frame = -3
Query: 310 VDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSAS 131
+D H LS LV C G +DW ++ H+YREAN +AD LA+ A PLG+H+ S
Sbjct: 193 IDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDI 252
Query: 130 VAPFILDDFRGRALPR 83
V + DD G A PR
Sbjct: 253 VMSIVHDDVAGSAYPR 268
>gb|ABK28199.1| unknown [Arabidopsis thaliana]
Length = 315
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/79 (43%), Positives = 45/79 (56%)
Frame = -3
Query: 319 KGAVDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSF 140
K ++ H LS LV C F RDW ++ H+YREAN +AD LA+ A S PLG+H L
Sbjct: 232 KIGINEVHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLV 291
Query: 139 SASVAPFILDDFRGRALPR 83
S+ +LDD G + R
Sbjct: 292 PDSLRFILLDDTSGATVSR 310
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 314
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/79 (43%), Positives = 45/79 (56%)
Frame = -3
Query: 319 KGAVDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSF 140
K ++ H LS LV C F RDW ++ H+YREAN +AD LA+ A S PLG+H L
Sbjct: 232 KIGINEVHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLV 291
Query: 139 SASVAPFILDDFRGRALPR 83
S+ +LDD G + R
Sbjct: 292 PDSLRFILLDDTSGATVSR 310
>gb|AAC67202.1| hypothetical protein [Arabidopsis thaliana]
Length = 117
Score = 66.2 bits (160), Expect = 4e-09
Identities = 33/79 (41%), Positives = 44/79 (55%)
Frame = -3
Query: 319 KGAVDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSF 140
K + H LS LV C G +DW ++ H+YREAN +AD LA+ A S PLG H+ S
Sbjct: 35 KTGISETHPLSFLVRLCYGLLSKDWLVRISHVYREANQLADGLANYAFSLPLGLHLFDSC 94
Query: 139 SASVAPFILDDFRGRALPR 83
+ + +D RG A PR
Sbjct: 95 PDCMLHCLAEDDRGAAHPR 113
>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
Length = 314
Score = 65.9 bits (159), Expect = 5e-09
Identities = 33/76 (43%), Positives = 44/76 (57%)
Frame = -3
Query: 310 VDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSAS 131
++ H LS LV C F RDW ++ H+YREAN +AD LA+ A S PLG+H L S
Sbjct: 235 INEVHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDS 294
Query: 130 VAPFILDDFRGRALPR 83
+ +LDD G + R
Sbjct: 295 LRFILLDDTSGATVSR 310
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 65.5 bits (158), Expect = 7e-09
Identities = 30/72 (41%), Positives = 44/72 (61%)
Frame = -3
Query: 298 HLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSASVAPF 119
H L+ LV C GF +DW ++ H+YREAN +AD LA+ A + P G+ +L S V+
Sbjct: 601 HPLAFLVRLCHGFISKDWIVRITHVYREANRLADGLANYAFTLPFGFLLLDSCPEHVSSI 660
Query: 118 ILDDFRGRALPR 83
+L+D G + PR
Sbjct: 661 LLEDVMGTSFPR 672
>gb|AAF79682.1|AC022314_23 F9C16.18 [Arabidopsis thaliana]
Length = 196
Score = 64.7 bits (156), Expect = 1e-08
Identities = 32/73 (43%), Positives = 40/73 (54%)
Frame = -3
Query: 310 VDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSAS 131
V H LS LV C GF +DW ++ H+YREAN +AD LA+ A P+G H+ S
Sbjct: 115 VSERHPLSFLVRLCHGFLLKDWIVRISHVYREANRLADGLANYAFLLPIGIHVFVSVPDV 174
Query: 130 VAPFILDDFRGRA 92
V P DD G A
Sbjct: 175 VEPLFSDDVIGSA 187
>gb|AAG12669.1|AC027033_4 hypothetical protein; 81517-79153 [Arabidopsis thaliana]
Length = 256
Score = 64.7 bits (156), Expect = 1e-08
Identities = 32/80 (40%), Positives = 44/80 (55%)
Frame = -3
Query: 319 KGAVDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSF 140
K + H LS L C GF +DW ++ H+YREAN +AD LA+ A + PLG+H S
Sbjct: 93 KTGIGDSHPLSFLARLCYGFISKDWIVRISHVYREANRLADGLANYAFTLPLGFHFFHSS 152
Query: 139 SASVAPFILDDFRGRALPRM 80
V L+D G + PR+
Sbjct: 153 PDVVDSVRLEDTSGTSCPRL 172
>gb|ABK28246.1| unknown [Arabidopsis thaliana]
Length = 107
Score = 64.3 bits (155), Expect = 2e-08
Identities = 32/76 (42%), Positives = 42/76 (55%)
Frame = -3
Query: 310 VDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSAS 131
+ H LS LV C GF RDW ++ H YREAN +AD LA+ A S PLG+ +
Sbjct: 27 ISESHPLSFLVRMCYGFISRDWIVRISHKYREANRLADGLANYAFSLPLGFQFFYVCPDA 86
Query: 130 VAPFILDDFRGRALPR 83
V +L+D G + PR
Sbjct: 87 VYSVMLEDRNGMSFPR 102
>gb|ABE65516.1| hypothetical protein At4g08860 [Arabidopsis thaliana]
Length = 106
Score = 64.3 bits (155), Expect = 2e-08
Identities = 32/76 (42%), Positives = 42/76 (55%)
Frame = -3
Query: 310 VDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSAS 131
+ H LS LV C GF RDW ++ H YREAN +AD LA+ A S PLG+ +
Sbjct: 27 ISESHPLSFLVRMCYGFISRDWIVRISHKYREANRLADGLANYAFSLPLGFQFFYVCPDA 86
Query: 130 VAPFILDDFRGRALPR 83
V +L+D G + PR
Sbjct: 87 VYSVMLEDRNGMSFPR 102
>gb|ABW81036.1| unknown [Arabidopsis lyrata subsp. lyrata]
Length = 172
Score = 63.9 bits (154), Expect = 2e-08
Identities = 32/70 (45%), Positives = 39/70 (55%)
Frame = -3
Query: 298 HLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSASVAPF 119
H LS LV C GF RDW ++ H+YR+AN AD LA+ S PLG+H S V F
Sbjct: 97 HPLSILVRLCYGFIARDWIVRVTHVYRKANRFADGLANYVFSLPLGFHDFVSVPVVVDSF 156
Query: 118 ILDDFRGRAL 89
+ DD G L
Sbjct: 157 LRDDVVGTTL 166
>gb|AAD49762.2|AC007932_10 F11A17.8 [Arabidopsis thaliana]
Length = 803
Score = 63.5 bits (153), Expect = 3e-08
Identities = 31/76 (40%), Positives = 41/76 (53%)
Frame = -3
Query: 310 VDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSAS 131
+ + LS LV C GF RDW ++ H+YREAN +AD LA+ S PLG+H
Sbjct: 27 ISEANPLSFLVRLCHGFILRDWIVRIVHVYREANRLADGLANYVFSLPLGFHSFECVPEH 86
Query: 130 VAPFILDDFRGRALPR 83
V +L+D G PR
Sbjct: 87 VRDILLEDTGGTCFPR 102
>gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana]
Length = 803
Score = 62.4 bits (150), Expect = 6e-08
Identities = 30/72 (41%), Positives = 40/72 (55%)
Frame = -3
Query: 298 HLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSASVAPF 119
H LS LV C G +DW ++ H+YREAN +AD LA+ A S PLG+H L +
Sbjct: 728 HPLSFLVRLCHGLLSKDWIVRITHVYREANRLADGLANYAFSLPLGFHSLIDVPDDLEVI 787
Query: 118 ILDDFRGRALPR 83
+ +D G PR
Sbjct: 788 LHEDSLGSTRPR 799
>ref|XP_002516183.1| conserved hypothetical protein [Ricinus communis]
gi|223544669|gb|EEF46185.1| conserved hypothetical
protein [Ricinus communis]
Length = 283
Score = 62.0 bits (149), Expect = 8e-08
Identities = 32/71 (45%), Positives = 41/71 (57%)
Frame = -3
Query: 289 SSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSFSASVAPFILD 110
S++V C +RDW HIYREAN VAD LA+LALS+P+G H L V + +
Sbjct: 205 SNMVLACLDILKRDWSASIGHIYREANQVADCLANLALSYPVGIHELPMVPYEVKTLVNE 264
Query: 109 DFRGRALPRMT 77
D G PR+T
Sbjct: 265 DCIGVGWPRVT 275
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 61.6 bits (148), Expect = 1e-07
Identities = 30/79 (37%), Positives = 44/79 (55%)
Frame = -3
Query: 319 KGAVDRCHLLSSLVFQCQGFFRRDWFIQFRHIYREANTVADYLASLALSFPLGWHILCSF 140
K + H LS LV C GF ++DW ++ H+YREAN +AD LA+ A S LG+H
Sbjct: 647 KTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLV 706
Query: 139 SASVAPFILDDFRGRALPR 83
+++ + +D G PR
Sbjct: 707 PDAMSSLLREDTLGSTRPR 725