BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00034022
         (243 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   118   7e-25
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe...   109   3e-22
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              109   3e-22
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   109   3e-22
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   108   1e-21
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   108   1e-21
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   103   2e-20
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   103   2e-20
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus...   103   3e-20
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   102   5e-20
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th...   100   3e-19
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian...   100   3e-19
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...    98   1e-18
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps...    98   1e-18
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...    98   1e-18
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    98   1e-18
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi...    98   1e-18
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...    97   3e-18
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...    96   4e-18
ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutr...    96   5e-18

>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  118 bits (296), Expect = 7e-25
 Identities = 56/80 (70%), Positives = 65/80 (81%)
 Frame = -2

Query: 242 MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
           MKEILFC  NF+ND+ DRRVILYLN C CGRK+C+ENASC+VK  LKKVSLRDAA+E  I
Sbjct: 661 MKEILFCRANFRNDINDRRVILYLNDCCCGRKYCQENASCLVKNHLKKVSLRDAAIELAI 720

Query: 62  EYKSPVVSSENYELDNGLVG 3
           EYK P +  E+ E+D GLVG
Sbjct: 721 EYKRPKLEPESCEIDAGLVG 740


>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  109 bits (273), Expect = 3e-22
 Identities = 53/80 (66%), Positives = 62/80 (77%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C VNFKN+L+DRRVILYLN C CGRK+CRE A+C+VK  LKKVSL+D AVEFMI
Sbjct: 864  MKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRERAACLVKNQLKKVSLKDTAVEFMI 923

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY + +    +   D GLVG
Sbjct: 924  EYNNQLSGLGSLINDAGLVG 943


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  109 bits (273), Expect = 3e-22
 Identities = 54/80 (67%), Positives = 61/80 (76%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C VNFKNDL+DRRVILYLN C+CGRK+CRENA+ +VK  LKK SL+D AVEFMI
Sbjct: 922  MKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAVEFMI 981

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY      S + E   GLVG
Sbjct: 982  EYVKQHAVSGSSEPGTGLVG 1001


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  109 bits (273), Expect = 3e-22
 Identities = 54/80 (67%), Positives = 61/80 (76%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C VNFKNDL+DRRVILYLN C+CGRK+CRENA+ +VK  LKK SL+D AVEFMI
Sbjct: 862  MKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAVEFMI 921

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY      S + E   GLVG
Sbjct: 922  EYVKQHAVSGSSEPGTGLVG 941


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  108 bits (269), Expect = 1e-21
 Identities = 52/80 (65%), Positives = 62/80 (77%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C VNF+N+L+DRRVILYLN C+CG  +CRENA+  VK  L+KVSL+DAAVEF+I
Sbjct: 866  MKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKDQLRKVSLKDAAVEFII 925

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY+      EN E D GLVG
Sbjct: 926  EYQQQRTQKENSETDVGLVG 945


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  108 bits (269), Expect = 1e-21
 Identities = 52/80 (65%), Positives = 65/80 (81%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C VNFKN+L+DRRV+LYLN C CGRK+CRE+A+ +VK  LKKVSL+D AVEFMI
Sbjct: 861  MKEILLCKVNFKNELIDRRVVLYLNDCGCGRKYCREHAAYLVKNRLKKVSLKDTAVEFMI 920

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY+    +  + E+D+GLVG
Sbjct: 921  EYQKERAAG-SMEIDSGLVG 939


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  103 bits (258), Expect = 2e-20
 Identities = 51/80 (63%), Positives = 62/80 (77%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C V+F ND +DRRVILYLN C CGRK+C+E A+ +VK  LK+VSL+DAAVEF+I
Sbjct: 861  MKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLI 920

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EYK P + S+    D GLVG
Sbjct: 921  EYKKPEIISD----DEGLVG 936


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  103 bits (258), Expect = 2e-20
 Identities = 51/80 (63%), Positives = 62/80 (77%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C V+F ND +DRRVILYLN C CGRK+C+E A+ +VK  LK+VSL+DAAVEF+I
Sbjct: 862  MKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLI 921

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EYK P + S+    D GLVG
Sbjct: 922  EYKKPEIISD----DEGLVG 937


>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
          Length = 2052

 Score =  103 bits (256), Expect = 3e-20
 Identities = 49/80 (61%), Positives = 61/80 (76%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C VNF+N+ +DRRVILYLN C+CG  +CRENA+  VK  L+KV+L+DAAVEF+I
Sbjct: 862  MKEILLCKVNFRNEPVDRRVILYLNDCDCGGNYCRENAAYKVKDQLRKVNLKDAAVEFVI 921

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY+   +   N E D GLVG
Sbjct: 922  EYQEQRIQKGNSETDAGLVG 941


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  102 bits (254), Expect = 5e-20
 Identities = 50/80 (62%), Positives = 60/80 (75%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C VNF+N+ +DRRVILYLN C+CG   CRENA+  VK  L+KVSL++AAVEF+I
Sbjct: 866  MKEILLCKVNFRNEPVDRRVILYLNDCDCGGSCCRENAAYSVKNQLRKVSLKNAAVEFII 925

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY+      EN E D GLVG
Sbjct: 926  EYQQQRTQKENSETDAGLVG 945


>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
          Length = 1976

 Score =  100 bits (248), Expect = 3e-19
 Identities = 45/80 (56%), Positives = 59/80 (73%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKE+L C VNF+N   DRRVILYLN C CG++FC+ENA+C V+  L KVSL+D AVEF++
Sbjct: 858  MKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAVEFLV 917

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY+     SE + +D+ L G
Sbjct: 918  EYRKQPTISEIFGIDSCLHG 937


>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
            gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
            Full=DNA-directed RNA polymerase V subunit 1; AltName:
            Full=DNA-directed RNA polymerase D subunit 1b;
            Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
            AltName: Full=DNA-directed RNA polymerase E subunit 1;
            Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
            DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
            DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
            Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
            AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
            gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
            alpha subunit [Arabidopsis thaliana]
            gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
            large subunit [Arabidopsis thaliana]
            gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
            [Arabidopsis thaliana]
          Length = 1976

 Score =  100 bits (248), Expect = 3e-19
 Identities = 45/80 (56%), Positives = 59/80 (73%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKE+L C VNF+N   DRRVILYLN C CG++FC+ENA+C V+  L KVSL+D AVEF++
Sbjct: 858  MKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAVEFLV 917

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY+     SE + +D+ L G
Sbjct: 918  EYRKQPTISEIFGIDSCLHG 937


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 49/80 (61%), Positives = 61/80 (76%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C   F+N+L+DRRVILYLN C CGRK+CRE A+ +V+  LKKVSL+D AVEFMI
Sbjct: 862  MKEILLCKAIFRNELIDRRVILYLNHCGCGRKYCREQATYLVQNQLKKVSLKDTAVEFMI 921

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EYK+   S    +++ GLVG
Sbjct: 922  EYKNQ-SSFSAVDMNAGLVG 940


>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
            gi|482562261|gb|EOA26451.1| hypothetical protein
            CARUB_v10022497mg [Capsella rubella]
          Length = 1959

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 44/80 (55%), Positives = 59/80 (73%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKE+L C VNF+N+  DRRVILYLN C CG++FC+ENA+C V+  L KVSL+  AVEF++
Sbjct: 858  MKEVLLCKVNFQNNTNDRRVILYLNECRCGKRFCQENAACTVRNKLNKVSLKATAVEFLV 917

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY+     SE + +D+ L G
Sbjct: 918  EYRKQQTISEIFGIDSCLHG 937


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 51/81 (62%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C V+FKN+ +DRRVILYLN C CGRK+C ENA+ VVK+ LKKV+L+DAA++FMI
Sbjct: 863  MKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVTLKDAAMDFMI 922

Query: 62   EY-KSPVVSSENYELDNGLVG 3
            EY + P  S     L  GLVG
Sbjct: 923  EYNRQPTPSG----LGPGLVG 939


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 51/81 (62%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C V+FKN+ +DRRVILYLN C CGRK+C ENA+ VVK+ LKKV+L+DAA++FMI
Sbjct: 893  MKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVTLKDAAMDFMI 952

Query: 62   EY-KSPVVSSENYELDNGLVG 3
            EY + P  S     L  GLVG
Sbjct: 953  EYNRQPTPSG----LGPGLVG 969


>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
            NRPD1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1947

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 45/80 (56%), Positives = 59/80 (73%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKE+L C VNF+N   DRRVILYLN C CG++FC+ENA+  V+  LKKVSL+D AVEF++
Sbjct: 858  MKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAAYTVRNKLKKVSLKDTAVEFLV 917

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY+     SE + +D+ L G
Sbjct: 918  EYRKQQTISEIFGIDSCLHG 937


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 50/80 (62%), Positives = 59/80 (73%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C V FKNDL DRRVILYLN C CGR +C+E A+ +VK  L+KVSL+D A  FMI
Sbjct: 868  MKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQERAAYLVKNHLEKVSLKDIAKCFMI 927

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EYKS  +  E++  D GLVG
Sbjct: 928  EYKSQQI-PESFGSDAGLVG 946


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 47/80 (58%), Positives = 61/80 (76%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKEIL C VNF+N+  DRRVILYLN C+CGR +CRENA+ +VK  L+KVSL+DAA++F +
Sbjct: 866  MKEILLCKVNFRNEPNDRRVILYLNDCDCGRSYCRENAAYLVKNQLRKVSLKDAALDFTV 925

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY+     ++  E D GLVG
Sbjct: 926  EYQQQRRRNDGSE-DAGLVG 944


>ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutrema salsugineum]
            gi|557112419|gb|ESQ52703.1| hypothetical protein
            EUTSA_v10016128mg [Eutrema salsugineum]
          Length = 1874

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 44/80 (55%), Positives = 58/80 (72%)
 Frame = -2

Query: 242  MKEILFCNVNFKNDLLDRRVILYLNACECGRKFCRENASCVVKTLLKKVSLRDAAVEFMI 63
            MKE+L C VNF+N   DRRVILYLN C CG+K+C+ENA+  V+  LKKVSL++ AVEF++
Sbjct: 858  MKEVLLCKVNFQNSANDRRVILYLNECRCGKKYCQENAAYTVRNKLKKVSLKETAVEFLV 917

Query: 62   EYKSPVVSSENYELDNGLVG 3
            EY+     SE +  D+ L G
Sbjct: 918  EYRKQQAISEIFGNDSSLRG 937