BLASTX nr result
ID: Rheum21_contig00033763
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00033763
(277 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324255.1| pentatricopeptide repeat-containing family p... 82 7e-14
ref|XP_006360941.1| PREDICTED: pentatricopeptide repeat-containi... 82 1e-13
ref|XP_004247963.1| PREDICTED: pentatricopeptide repeat-containi... 82 1e-13
ref|XP_002516590.1| pentatricopeptide repeat-containing protein,... 81 2e-13
ref|XP_006481440.1| PREDICTED: pentatricopeptide repeat-containi... 79 5e-13
ref|XP_006476161.1| PREDICTED: pentatricopeptide repeat-containi... 79 5e-13
ref|XP_006450596.1| hypothetical protein CICLE_v10010742mg [Citr... 79 5e-13
ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containi... 78 1e-12
emb|CBI20961.3| unnamed protein product [Vitis vinifera] 77 2e-12
ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containi... 77 2e-12
gb|EXC32781.1| hypothetical protein L484_019895 [Morus notabilis] 76 4e-12
ref|XP_002884209.1| pentatricopeptide repeat-containing protein ... 75 1e-11
gb|EMJ28472.1| hypothetical protein PRUPE_ppa017736mg [Prunus pe... 73 3e-11
ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 73 3e-11
ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis th... 73 3e-11
ref|XP_006408981.1| hypothetical protein EUTSA_v10001958mg [Eutr... 73 4e-11
ref|XP_004501200.1| PREDICTED: pentatricopeptide repeat-containi... 72 8e-11
gb|ESW09151.1| hypothetical protein PHAVU_009G104600g [Phaseolus... 72 1e-10
ref|XP_004292867.1| PREDICTED: pentatricopeptide repeat-containi... 72 1e-10
ref|XP_006299486.1| hypothetical protein CARUB_v10015651mg [Caps... 70 3e-10
>ref|XP_002324255.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|222865689|gb|EEF02820.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 547
Score = 82.0 bits (201), Expect = 7e-14
Identities = 37/48 (77%), Positives = 42/48 (87%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+KIWGSLLSSCRTH NL++A IAMEHL E EPDDTGNYV+LS Y
Sbjct: 417 KPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIY 464
>ref|XP_006360941.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Solanum tuberosum]
Length = 536
Score = 81.6 bits (200), Expect = 1e-13
Identities = 35/48 (72%), Positives = 42/48 (87%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+ IWGSLLSSCRTHRNL +A IAMEHLLE EP+DTGNY++L+ Y
Sbjct: 410 KPDSAIWGSLLSSCRTHRNLEIAVIAMEHLLELEPEDTGNYILLANIY 457
>ref|XP_004247963.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Solanum lycopersicum]
Length = 534
Score = 81.6 bits (200), Expect = 1e-13
Identities = 35/48 (72%), Positives = 42/48 (87%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+ IWGSLLSSCRTHRNL +A IAMEHLLE EP+DTGNY++L+ Y
Sbjct: 408 KPDSAIWGSLLSSCRTHRNLEIAVIAMEHLLELEPEDTGNYILLANIY 455
>ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544410|gb|EEF45931.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 517
Score = 80.9 bits (198), Expect = 2e-13
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+KIWGSLLSSCRTH N+ VA IAMEHL E EPDDTGNYV+LS Y
Sbjct: 393 KPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIY 440
>ref|XP_006481440.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like, partial [Citrus sinensis]
Length = 436
Score = 79.3 bits (194), Expect = 5e-13
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PDAKIWGSLLSSCRT+ NL +A IAMEHLL EP+DTGNYV+LS Y
Sbjct: 310 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 357
>ref|XP_006476161.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Citrus sinensis]
Length = 541
Score = 79.3 bits (194), Expect = 5e-13
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PDAKIWGSLLSSCRT+ NL +A IAMEHLL EP+DTGNYV+LS Y
Sbjct: 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462
>ref|XP_006450596.1| hypothetical protein CICLE_v10010742mg [Citrus clementina]
gi|557553822|gb|ESR63836.1| hypothetical protein
CICLE_v10010742mg [Citrus clementina]
Length = 605
Score = 79.3 bits (194), Expect = 5e-13
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PDAKIWGSLLSSCRT+ NL +A IAMEHLL EP+DTGNYV+LS Y
Sbjct: 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462
>ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 77.8 bits (190), Expect = 1e-12
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+ IWGSLLSSCR+H NL +A IAMEHLLE EP DTGNYV+LS Y
Sbjct: 415 KPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLY 462
>emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+ IWGSLLSSCR+H NL +A IAMEHLLE EP DTGNYV+LS Y
Sbjct: 431 KPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLY 478
>ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+ IWGSLLSSCR+H NL +A IAMEHLLE EP DTGNYV+LS Y
Sbjct: 415 KPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLY 462
>gb|EXC32781.1| hypothetical protein L484_019895 [Morus notabilis]
Length = 549
Score = 76.3 bits (186), Expect = 4e-12
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+KIWGSLL+SCR H N+ +A +AMEHLLE EPDD GNYV+LS Y
Sbjct: 417 KPDSKIWGSLLNSCRIHCNVEIAIVAMEHLLEIEPDDIGNYVLLSNVY 464
>ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297330049|gb|EFH60468.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 534
Score = 74.7 bits (182), Expect = 1e-11
Identities = 33/48 (68%), Positives = 41/48 (85%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+KIWGSLLSSCRT NL+VA +AM+HL+E EPDD GNYV+L+ Y
Sbjct: 407 KPDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIY 454
>gb|EMJ28472.1| hypothetical protein PRUPE_ppa017736mg [Prunus persica]
Length = 544
Score = 73.2 bits (178), Expect = 3e-11
Identities = 33/48 (68%), Positives = 38/48 (79%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+P++KIWGSLLSSCRTH NL +A AMEHL EPDD GNYV+LS Y
Sbjct: 415 KPESKIWGSLLSSCRTHCNLEIAITAMEHLSVLEPDDAGNYVLLSNIY 462
>ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 73.2 bits (178), Expect = 3e-11
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+ IWG L SSCR+H NL + IAMEHLLE EPDDTGNY+ LS Y
Sbjct: 389 KPDSDIWGLLSSSCRSHGNLEIVAIAMEHLLELEPDDTGNYITLSNLY 436
>ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g20540 gi|4586036|gb|AAD25654.1| unknown protein
[Arabidopsis thaliana] gi|67633530|gb|AAY78689.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana] gi|330251931|gb|AEC07025.1| mitochondrial
editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 73.2 bits (178), Expect = 3e-11
Identities = 32/48 (66%), Positives = 41/48 (85%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+KIWGSLLSSCRT NL+VA +AM+HL+E EP+D GNYV+L+ Y
Sbjct: 407 KPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIY 454
>ref|XP_006408981.1| hypothetical protein EUTSA_v10001958mg [Eutrema salsugineum]
gi|557110137|gb|ESQ50434.1| hypothetical protein
EUTSA_v10001958mg [Eutrema salsugineum]
Length = 531
Score = 72.8 bits (177), Expect = 4e-11
Identities = 33/48 (68%), Positives = 38/48 (79%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+KIWGSLLSSCRT NL+VA +AM HL E EP+D GNYV LS Y
Sbjct: 407 KPDSKIWGSLLSSCRTRGNLDVALVAMHHLAELEPEDMGNYVQLSNIY 454
>ref|XP_004501200.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like isoform X1 [Cicer arietinum]
gi|502132029|ref|XP_004501201.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g20540-like isoform X2 [Cicer arietinum]
gi|502132032|ref|XP_004501202.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g20540-like isoform X3 [Cicer arietinum]
gi|502132034|ref|XP_004501203.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g20540-like isoform X4 [Cicer arietinum]
Length = 553
Score = 72.0 bits (175), Expect = 8e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNYGAFFLELLFDTE 96
+PD++IW SLLSSCR HRNL +A IAM+ LLE EP+++GNYV+L+ Y E
Sbjct: 409 KPDSRIWNSLLSSCRIHRNLEIAVIAMQQLLELEPEESGNYVLLANIY----------AE 458
Query: 95 MNKW 84
+ KW
Sbjct: 459 LGKW 462
>gb|ESW09151.1| hypothetical protein PHAVU_009G104600g [Phaseolus vulgaris]
Length = 527
Score = 71.6 bits (174), Expect = 1e-10
Identities = 32/64 (50%), Positives = 44/64 (68%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNYGAFFLELLFDTE 96
+PD++IW +LLSSCR HRNL +A +AME LLE EP+++GNYV+L+ Y E
Sbjct: 406 QPDSRIWNTLLSSCRIHRNLEIAAVAMEQLLELEPEESGNYVLLANIY----------AE 455
Query: 95 MNKW 84
+ KW
Sbjct: 456 LGKW 459
>ref|XP_004292867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Fragaria vesca subsp. vesca]
Length = 544
Score = 71.6 bits (174), Expect = 1e-10
Identities = 33/48 (68%), Positives = 38/48 (79%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+KIWGSLLSSCRT NL +A IAME L + EPDD GNYV+LS Y
Sbjct: 415 KPDSKIWGSLLSSCRTFCNLEIALIAMEQLQDLEPDDAGNYVLLSNIY 462
>ref|XP_006299486.1| hypothetical protein CARUB_v10015651mg [Capsella rubella]
gi|482568195|gb|EOA32384.1| hypothetical protein
CARUB_v10015651mg [Capsella rubella]
Length = 534
Score = 70.1 bits (170), Expect = 3e-10
Identities = 30/48 (62%), Positives = 40/48 (83%)
Frame = -3
Query: 275 RPDAKIWGSLLSSCRTHRNLNVAEIAMEHLLEFEPDDTGNYVMLSKNY 132
+PD+KIWGSLLSSC+T NL+VA +AM+HL+ EP+D GNYV+L+ Y
Sbjct: 407 KPDSKIWGSLLSSCKTQGNLDVALVAMDHLVVLEPEDMGNYVLLANIY 454