BLASTX nr result
ID: Rheum21_contig00032491
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00032491
(450 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002303484.1| suppressor of forked family protein [Populus... 79 8e-13
ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subun... 76 4e-12
gb|ESW23484.1| hypothetical protein PHAVU_004G051000g [Phaseolus... 66 4e-09
ref|XP_002519397.1| plant RNA cleavage stimulation factor, putat... 64 2e-08
gb|EOY19418.1| Tetratricopeptide repeat (TPR)-like superfamily p... 64 2e-08
gb|EOY19416.1| Tetratricopeptide repeat-like superfamily protein... 64 2e-08
ref|XP_006604052.1| PREDICTED: cleavage stimulation factor subun... 64 3e-08
ref|XP_004165274.1| PREDICTED: LOW QUALITY PROTEIN: cleavage sti... 61 2e-07
ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subun... 61 2e-07
ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medica... 60 3e-07
ref|XP_006481295.1| PREDICTED: cleavage stimulation factor subun... 59 5e-07
ref|XP_006429695.1| hypothetical protein CICLE_v10011123mg [Citr... 59 5e-07
ref|XP_006416668.1| hypothetical protein EUTSA_v10006915mg [Eutr... 57 2e-06
ref|XP_004489637.1| PREDICTED: LOW QUALITY PROTEIN: cleavage sti... 57 3e-06
gb|AAF99818.1|AC034257_10 Similar to cleavage stimulation factor... 56 4e-06
ref|NP_173218.2| cleavage stimulation factor 77-like protein [Ar... 56 4e-06
gb|AAM64166.1|AF515697_1 cleavage stimulation factor 77 [Arabido... 56 4e-06
ref|XP_002892966.1| cleavage stimulation factor 77 [Arabidopsis ... 55 7e-06
>ref|XP_002303484.1| suppressor of forked family protein [Populus trichocarpa]
gi|222840916|gb|EEE78463.1| suppressor of forked family
protein [Populus trichocarpa]
Length = 769
Score = 78.6 bits (192), Expect = 8e-13
Identities = 46/92 (50%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +3
Query: 9 SGPG-SELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFKL 185
SGP S+LSGSS+ RPV SGSS + T DRQSGKRK RQ+E+E A++QS P P+DVF++
Sbjct: 678 SGPATSDLSGSSRSRPVPSGSSFK-TRDRQSGKRKDRDRQEEDETATVQSQPLPRDVFRI 736
Query: 186 RQMRRXXXXXXXXXXXXXXXXXXFSGDHSGST 281
RQ+++ SGD SGST
Sbjct: 737 RQIQKSRAAATTSQTGSVSYGSALSGDLSGST 768
>ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subunit 3 [Vitis vinifera]
gi|297736046|emb|CBI24084.3| unnamed protein product
[Vitis vinifera]
Length = 769
Score = 76.3 bits (186), Expect = 4e-12
Identities = 43/87 (49%), Positives = 55/87 (63%)
Frame = +3
Query: 21 SELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFKLRQMRR 200
S+LSGSSK PV SGSS + DRQ GKRK + RQ+++E A+ QSLP P+DVFK+RQ+R+
Sbjct: 683 SDLSGSSKSHPVPSGSSFKPMRDRQPGKRKDLDRQEDDETATAQSLPLPRDVFKIRQIRK 742
Query: 201 XXXXXXXXXXXXXXXXXXFSGDHSGST 281
FSG+ SGST
Sbjct: 743 -ARGGTTSQTGSASYGSAFSGELSGST 768
>gb|ESW23484.1| hypothetical protein PHAVU_004G051000g [Phaseolus vulgaris]
Length = 738
Score = 66.2 bits (160), Expect = 4e-09
Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Frame = +3
Query: 3 AKSGPG-SELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVF 179
A S P SELSGSSK PV SG S + +RQ GKRK +RQ++++ ++QS P P+D F
Sbjct: 645 AGSAPATSELSGSSKSHPVPSGVSLKPGSNRQYGKRKESERQEDDDTTTVQSQPLPRDAF 704
Query: 180 KLRQMRRXXXXXXXXXXXXXXXXXXFSGDHSGST 281
++RQ ++ FSGD SGST
Sbjct: 705 RIRQYQK-ARASSASQTGSVSYGSAFSGDLSGST 737
>ref|XP_002519397.1| plant RNA cleavage stimulation factor, putative [Ricinus communis]
gi|223541464|gb|EEF43014.1| plant RNA cleavage
stimulation factor, putative [Ricinus communis]
Length = 767
Score = 64.3 bits (155), Expect = 2e-08
Identities = 38/87 (43%), Positives = 51/87 (58%)
Frame = +3
Query: 21 SELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFKLRQMRR 200
S+LSGSSK RPV S DRQSGKRK ++RQ+E+E A++QS P P+D+F++R ++
Sbjct: 686 SDLSGSSKSRPVLKPSR-----DRQSGKRKDIERQEEDETATVQSQPLPRDIFRIRHSQK 740
Query: 201 XXXXXXXXXXXXXXXXXXFSGDHSGST 281
SGD SGST
Sbjct: 741 -ARVGTASQTGSASYGSALSGDLSGST 766
>gb|EOY19418.1| Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3
[Theobroma cacao]
Length = 755
Score = 63.9 bits (154), Expect = 2e-08
Identities = 38/87 (43%), Positives = 51/87 (58%)
Frame = +3
Query: 21 SELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFKLRQMRR 200
S+LSGSSK P+ S SS R DR GKRK + RQ+E+E ++QS P P+DVF++RQ+++
Sbjct: 670 SDLSGSSKSHPIPSSSSFRPR-DRHLGKRKDLDRQEEDETTTVQSQPLPRDVFRIRQIQK 728
Query: 201 XXXXXXXXXXXXXXXXXXFSGDHSGST 281
SGD SGST
Sbjct: 729 -ARGGSASQTGSVSYGSALSGDLSGST 754
>gb|EOY19416.1| Tetratricopeptide repeat-like superfamily protein isoform 1
[Theobroma cacao]
Length = 761
Score = 63.9 bits (154), Expect = 2e-08
Identities = 38/87 (43%), Positives = 51/87 (58%)
Frame = +3
Query: 21 SELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFKLRQMRR 200
S+LSGSSK P+ S SS R DR GKRK + RQ+E+E ++QS P P+DVF++RQ+++
Sbjct: 676 SDLSGSSKSHPIPSSSSFRPR-DRHLGKRKDLDRQEEDETTTVQSQPLPRDVFRIRQIQK 734
Query: 201 XXXXXXXXXXXXXXXXXXFSGDHSGST 281
SGD SGST
Sbjct: 735 -ARGGSASQTGSVSYGSALSGDLSGST 760
>ref|XP_006604052.1| PREDICTED: cleavage stimulation factor subunit 3-like [Glycine max]
Length = 739
Score = 63.5 bits (153), Expect = 3e-08
Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +3
Query: 3 AKSGPGSELSGSSKPRPVTSGS-SARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVF 179
A + SELSGSSK P SG S + +RQ GKRK RQDE++ ++QS P P+D F
Sbjct: 646 APAAAASELSGSSKSHPAPSGGVSLKPGSNRQYGKRKEPDRQDEDDTTTVQSQPLPRDAF 705
Query: 180 KLRQMRRXXXXXXXXXXXXXXXXXXFSGDHSGST 281
++RQ ++ FSGD SGST
Sbjct: 706 RIRQYQK-ARASSASQTGSVSYGSAFSGDLSGST 738
>ref|XP_004165274.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
3-like [Cucumis sativus]
Length = 460
Score = 60.8 bits (146), Expect = 2e-07
Identities = 37/87 (42%), Positives = 49/87 (56%)
Frame = +3
Query: 21 SELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFKLRQMRR 200
S+LSGSSK S SS + T D+QSGKRK RQ++ E ++QS P PKD F++RQ+++
Sbjct: 375 SDLSGSSKSHAF-SNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDXFRIRQIQK 433
Query: 201 XXXXXXXXXXXXXXXXXXFSGDHSGST 281
SGD SGST
Sbjct: 434 -ARGATSSQTGSASYGSAISGDLSGST 459
>ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subunit 3-like [Cucumis
sativus]
Length = 871
Score = 60.8 bits (146), Expect = 2e-07
Identities = 37/87 (42%), Positives = 49/87 (56%)
Frame = +3
Query: 21 SELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFKLRQMRR 200
S+LSGSSK S SS + T D+QSGKRK RQ++ E ++QS P PKD F++RQ+++
Sbjct: 786 SDLSGSSKSHAF-SNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQIQK 844
Query: 201 XXXXXXXXXXXXXXXXXXFSGDHSGST 281
SGD SGST
Sbjct: 845 -ARGATSSQTGSASYGSAISGDLSGST 870
>ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medicago truncatula]
gi|355493935|gb|AES75138.1| mRNA 3'-end-processing
protein rna14 [Medicago truncatula]
Length = 737
Score = 60.1 bits (144), Expect = 3e-07
Identities = 36/87 (41%), Positives = 47/87 (54%)
Frame = +3
Query: 21 SELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFKLRQMRR 200
SELSGSSK PV SG S +Q GKRK + Q+E++ S+QS P P+D F++RQ ++
Sbjct: 651 SELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQPLPQDAFRIRQFQK 710
Query: 201 XXXXXXXXXXXXXXXXXXFSGDHSGST 281
SGD SGST
Sbjct: 711 -ARAGSTSQTGSVSYGSALSGDLSGST 736
>ref|XP_006481295.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform X2
[Citrus sinensis]
Length = 743
Score = 59.3 bits (142), Expect = 5e-07
Identities = 35/87 (40%), Positives = 50/87 (57%)
Frame = +3
Query: 21 SELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFKLRQMRR 200
S +SGS+K P SGSS + + D+QS KRK + QD++E ++QS P P+D F++RQM++
Sbjct: 658 SGISGSNKSHPTPSGSSLKQSKDKQSLKRKDI-GQDDDETTTVQSQPQPRDFFRIRQMKK 716
Query: 201 XXXXXXXXXXXXXXXXXXFSGDHSGST 281
SGD SGST
Sbjct: 717 -ARGAASSQTGSASYGSAVSGDLSGST 742
>ref|XP_006429695.1| hypothetical protein CICLE_v10011123mg [Citrus clementina]
gi|568855400|ref|XP_006481294.1| PREDICTED: cleavage
stimulation factor subunit 3-like isoform X1 [Citrus
sinensis] gi|557531752|gb|ESR42935.1| hypothetical
protein CICLE_v10011123mg [Citrus clementina]
Length = 770
Score = 59.3 bits (142), Expect = 5e-07
Identities = 35/87 (40%), Positives = 50/87 (57%)
Frame = +3
Query: 21 SELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFKLRQMRR 200
S +SGS+K P SGSS + + D+QS KRK + QD++E ++QS P P+D F++RQM++
Sbjct: 685 SGISGSNKSHPTPSGSSLKQSKDKQSLKRKDI-GQDDDETTTVQSQPQPRDFFRIRQMKK 743
Query: 201 XXXXXXXXXXXXXXXXXXFSGDHSGST 281
SGD SGST
Sbjct: 744 -ARGAASSQTGSASYGSAVSGDLSGST 769
>ref|XP_006416668.1| hypothetical protein EUTSA_v10006915mg [Eutrema salsugineum]
gi|557094439|gb|ESQ35021.1| hypothetical protein
EUTSA_v10006915mg [Eutrema salsugineum]
Length = 734
Score = 57.4 bits (137), Expect = 2e-06
Identities = 36/81 (44%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +3
Query: 45 PRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFKLRQMR--RXXXXXX 218
P T G S R T DR++ KRK RQ+E++ SIQS P P DVF+LRQMR R
Sbjct: 653 PSGSTRGGSQRLTRDRRATKRKDSDRQEEDDTTSIQSQPLPTDVFRLRQMRKARGISTSS 712
Query: 219 XXXXXXXXXXXXFSGDHSGST 281
FSG+ SGST
Sbjct: 713 QTPTGSTSYGSAFSGELSGST 733
>ref|XP_004489637.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
3-like [Cicer arietinum]
Length = 755
Score = 57.0 bits (136), Expect = 3e-06
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Frame = +3
Query: 21 SELSGSSKPR--PVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFKLRQM 194
SELSGSSK PV +G S + T +Q GKRK + RQ++++ ++QS P P+D F++RQ
Sbjct: 667 SELSGSSKSHSHPVQTGLSHKPTNRQQYGKRKELDRQEDDDTTTVQSQPLPRDAFRIRQY 726
Query: 195 RRXXXXXXXXXXXXXXXXXXFSGDHSGST 281
++ SGD SGST
Sbjct: 727 QK-ARAGSTSQTGSVSYGSALSGDLSGST 754
>gb|AAF99818.1|AC034257_10 Similar to cleavage stimulation factor subunit [Arabidopsis
thaliana]
Length = 793
Score = 56.2 bits (134), Expect = 4e-06
Identities = 38/95 (40%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = +3
Query: 3 AKSGPGSELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFK 182
AK P S+ + P T G S R DR++ KRK RQ+E++ A++QS P P DVF+
Sbjct: 702 AKGNPPSQ----NDPSGPTRGVSQRLPRDRRATKRKDSDRQEEDDTATVQSQPLPTDVFR 757
Query: 183 LRQMR--RXXXXXXXXXXXXXXXXXXFSGDHSGST 281
LRQMR R FSG+ SGST
Sbjct: 758 LRQMRKARGIATSSQTPTGSTSYGSAFSGELSGST 792
>ref|NP_173218.2| cleavage stimulation factor 77-like protein [Arabidopsis thaliana]
gi|26983802|gb|AAN86153.1| unknown protein [Arabidopsis
thaliana] gi|332191512|gb|AEE29633.1| cleavage
stimulation factor 77-like protein [Arabidopsis
thaliana]
Length = 734
Score = 56.2 bits (134), Expect = 4e-06
Identities = 38/95 (40%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = +3
Query: 3 AKSGPGSELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFK 182
AK P S+ + P T G S R DR++ KRK RQ+E++ A++QS P P DVF+
Sbjct: 643 AKGNPPSQ----NDPSGPTRGVSQRLPRDRRATKRKDSDRQEEDDTATVQSQPLPTDVFR 698
Query: 183 LRQMR--RXXXXXXXXXXXXXXXXXXFSGDHSGST 281
LRQMR R FSG+ SGST
Sbjct: 699 LRQMRKARGIATSSQTPTGSTSYGSAFSGELSGST 733
>gb|AAM64166.1|AF515697_1 cleavage stimulation factor 77 [Arabidopsis thaliana]
Length = 734
Score = 56.2 bits (134), Expect = 4e-06
Identities = 38/95 (40%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = +3
Query: 3 AKSGPGSELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFK 182
AK P S+ + P T G S R DR++ KRK RQ+E++ A++QS P P DVF+
Sbjct: 643 AKGNPPSQ----NDPSGPTRGVSQRLPRDRRATKRKDSDRQEEDDTATVQSQPLPTDVFR 698
Query: 183 LRQMR--RXXXXXXXXXXXXXXXXXXFSGDHSGST 281
LRQMR R FSG+ SGST
Sbjct: 699 LRQMRKARGIATSSQTPTGSTSYGSAFSGELSGST 733
>ref|XP_002892966.1| cleavage stimulation factor 77 [Arabidopsis lyrata subsp. lyrata]
gi|297338808|gb|EFH69225.1| cleavage stimulation factor
77 [Arabidopsis lyrata subsp. lyrata]
Length = 734
Score = 55.5 bits (132), Expect = 7e-06
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = +3
Query: 3 AKSGPGSELSGSSKPRPVTSGSSARSTLDRQSGKRKYVQRQDEEEEASIQSLPPPKDVFK 182
AK P S+ + P T G S R DR++ KRK RQ++++ A++QS P P DVF+
Sbjct: 643 AKGNPPSQ----NDPSGPTRGMSQRLPRDRRATKRKDSDRQEDDDTATVQSQPLPTDVFR 698
Query: 183 LRQMR--RXXXXXXXXXXXXXXXXXXFSGDHSGST 281
LRQMR R FSG+ SGST
Sbjct: 699 LRQMRKARGIATSSQTPTGSTSYGSAFSGELSGST 733