BLASTX nr result
ID: Rheum21_contig00031097
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00031097
(306 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006409688.1| hypothetical protein EUTSA_v10022652mg [Eutr... 89 5e-16
gb|EMJ00171.1| hypothetical protein PRUPE_ppa015078mg [Prunus pe... 89 6e-16
gb|EOY19411.1| Tetratricopeptide repeat-like superfamily protein... 89 8e-16
ref|XP_006432131.1| hypothetical protein CICLE_v10000792mg [Citr... 87 3e-15
ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containi... 84 3e-14
emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera] 84 3e-14
ref|XP_002306265.2| hypothetical protein POPTR_0005s06780g [Popu... 82 7e-14
gb|EXC28035.1| hypothetical protein L484_022268 [Morus notabilis] 81 2e-13
ref|XP_002512558.1| pentatricopeptide repeat-containing protein,... 79 5e-13
sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-c... 79 5e-13
ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containi... 79 8e-13
ref|XP_006299538.1| hypothetical protein CARUB_v10015710mg [Caps... 78 1e-12
gb|ESW10509.1| hypothetical protein PHAVU_009G215700g [Phaseolus... 77 2e-12
ref|XP_006856440.1| hypothetical protein AMTR_s00047p00228510 [A... 72 6e-11
ref|XP_004306198.1| PREDICTED: pentatricopeptide repeat-containi... 71 1e-10
ref|XP_003598203.1| Pentatricopeptide repeat-containing protein ... 71 2e-10
ref|XP_004516335.1| PREDICTED: pentatricopeptide repeat-containi... 69 6e-10
gb|AFW73673.1| hypothetical protein ZEAMMB73_530264 [Zea mays] 63 5e-08
ref|XP_004966841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 62 6e-08
ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group] g... 62 6e-08
>ref|XP_006409688.1| hypothetical protein EUTSA_v10022652mg [Eutrema salsugineum]
gi|557110850|gb|ESQ51141.1| hypothetical protein
EUTSA_v10022652mg [Eutrema salsugineum]
Length = 513
Score = 89.4 bits (220), Expect = 5e-16
Identities = 49/87 (56%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
Frame = +3
Query: 45 SLPETQPRRLRVSFTDFMIDILGRTRQFDVT**LIVEL-QTLNLTPKSSTFLVLIRRLIA 221
SLP SF + +IDILG+ RQFDV LIVE+ Q N+ P TFL+LI+RLIA
Sbjct: 95 SLPSPSTSTTLTSF-NLIIDILGKVRQFDVVRQLIVEMEQQENVKPSPETFLILIKRLIA 153
Query: 222 AGLTRQAIRAFDDMPCFVESKTSKDDF 302
AGLTRQA+RAFDD PCF+ES+ ++F
Sbjct: 154 AGLTRQAVRAFDDAPCFLESRLGVEEF 180
>gb|EMJ00171.1| hypothetical protein PRUPE_ppa015078mg [Prunus persica]
Length = 480
Score = 89.0 bits (219), Expect = 6e-16
Identities = 48/86 (55%), Positives = 63/86 (73%)
Frame = +3
Query: 45 SLPETQPRRLRVSFTDFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIAA 224
SLP+ P SF + +IDIL + RQ+DV LI+E+ NLTP +STFL+LIRRLI++
Sbjct: 64 SLPD--PPLSTASF-NLLIDILAKVRQYDVAWQLILEMDNFNLTPTASTFLILIRRLISS 120
Query: 225 GLTRQAIRAFDDMPCFVESKTSKDDF 302
GLTRQA+RAF+DM FV++K S DF
Sbjct: 121 GLTRQAVRAFEDMETFVQTKPSSQDF 146
>gb|EOY19411.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
Length = 612
Score = 88.6 bits (218), Expect = 8e-16
Identities = 47/90 (52%), Positives = 60/90 (66%)
Frame = +3
Query: 27 FDLRWMSLPETQPRRLRVSFTDFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLI 206
F L SLP + L + + +ID+L + RQFDV LI+E+ N+ P SSTF++LI
Sbjct: 177 FFLYSKSLPPSPSSLLSTTSYNLIIDVLAKVRQFDVVWQLILEMDQTNIPPDSSTFMILI 236
Query: 207 RRLIAAGLTRQAIRAFDDMPCFVESKTSKD 296
RRLIAAGLTRQAIR+FDDM CFV + D
Sbjct: 237 RRLIAAGLTRQAIRSFDDMGCFVTADNETD 266
>ref|XP_006432131.1| hypothetical protein CICLE_v10000792mg [Citrus clementina]
gi|567879147|ref|XP_006432132.1| hypothetical protein
CICLE_v10000792mg [Citrus clementina]
gi|568821248|ref|XP_006465094.1| PREDICTED:
pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like isoform X1 [Citrus sinensis]
gi|568821250|ref|XP_006465095.1| PREDICTED:
pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like isoform X2 [Citrus sinensis]
gi|557534253|gb|ESR45371.1| hypothetical protein
CICLE_v10000792mg [Citrus clementina]
gi|557534254|gb|ESR45372.1| hypothetical protein
CICLE_v10000792mg [Citrus clementina]
Length = 540
Score = 86.7 bits (213), Expect = 3e-15
Identities = 43/70 (61%), Positives = 55/70 (78%)
Frame = +3
Query: 90 DFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIAAGLTRQAIRAFDDMPC 269
+ +IDIL + RQFDV LIV++ N+TP SS FL+LIRRLIAAGLTRQAIRAFDDM C
Sbjct: 131 NLIIDILSKVRQFDVVWQLIVQMDQNNITPISSAFLILIRRLIAAGLTRQAIRAFDDMKC 190
Query: 270 FVESKTSKDD 299
FV+++ ++
Sbjct: 191 FVQTENQNNN 200
>ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial [Vitis vinifera]
gi|296088528|emb|CBI37519.3| unnamed protein product
[Vitis vinifera]
Length = 525
Score = 83.6 bits (205), Expect = 3e-14
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = +3
Query: 90 DFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIAAGLTRQAIRAFDDMPC 269
+ +IDIL + RQFDV I+E+ +L P S+TF +LIRR ++AGLTRQA+RAFDDM C
Sbjct: 121 NLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGLTRQAVRAFDDMSC 180
Query: 270 FVESKTSKDDF 302
FVE DDF
Sbjct: 181 FVEKDADSDDF 191
>emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
Length = 525
Score = 83.6 bits (205), Expect = 3e-14
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = +3
Query: 90 DFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIAAGLTRQAIRAFDDMPC 269
+ +IDIL + RQFDV I+E+ +L P S+TF +LIRR ++AGLTRQA+RAFDDM C
Sbjct: 121 NLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGLTRQAVRAFDDMSC 180
Query: 270 FVESKTSKDDF 302
FVE DDF
Sbjct: 181 FVEKDADSDDF 191
>ref|XP_002306265.2| hypothetical protein POPTR_0005s06780g [Populus trichocarpa]
gi|550338280|gb|EEE93261.2| hypothetical protein
POPTR_0005s06780g [Populus trichocarpa]
Length = 548
Score = 82.0 bits (201), Expect = 7e-14
Identities = 43/71 (60%), Positives = 50/71 (70%)
Frame = +3
Query: 90 DFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIAAGLTRQAIRAFDDMPC 269
+ MIDIL + RQFDV LIVE+ N+ P S TF VLIRRL+AAGLTRQAIRAFDDM
Sbjct: 144 NLMIDILAKVRQFDVCWQLIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAIRAFDDMES 203
Query: 270 FVESKTSKDDF 302
FV ++ F
Sbjct: 204 FVSEPVNETHF 214
>gb|EXC28035.1| hypothetical protein L484_022268 [Morus notabilis]
Length = 540
Score = 80.9 bits (198), Expect = 2e-13
Identities = 41/73 (56%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Frame = +3
Query: 90 DFMIDILGRTRQFDVT**LIVEL-QTLNLTPKSSTFLVLIRRLIAAGLTRQAIRAFDDMP 266
+ +ID+L + RQFDV LIVE+ ++ + P S TFL+LIRRLIAAGLTRQA+RAFDD+
Sbjct: 135 NILIDVLAKVRQFDVVWQLIVEMDRSTGVKPDSDTFLILIRRLIAAGLTRQAVRAFDDVE 194
Query: 267 CFVESKTSKDDFL 305
FV ++ + +DFL
Sbjct: 195 AFVGTRPTSEDFL 207
>ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548519|gb|EEF50010.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 511
Score = 79.3 bits (194), Expect = 5e-13
Identities = 42/87 (48%), Positives = 58/87 (66%)
Frame = +3
Query: 42 MSLPETQPRRLRVSFTDFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIA 221
+SLP + + + + +IDIL + RQFDV+ LI+++ NL P S TFL+LIRRLI+
Sbjct: 94 LSLPSSS---VNTTTYNLIIDILSKVRQFDVSWQLIIQMDQNNLQPNSHTFLILIRRLIS 150
Query: 222 AGLTRQAIRAFDDMPCFVESKTSKDDF 302
AG TRQAIRAFDDM F+ ++ F
Sbjct: 151 AGFTRQAIRAFDDMESFIAETVNQTHF 177
>sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g13420, mitochondrial; Flags: Precursor
gi|110738270|dbj|BAF01064.1| hypothetical protein
[Arabidopsis thaliana]
Length = 509
Score = 79.3 bits (194), Expect = 5e-13
Identities = 46/84 (54%), Positives = 58/84 (69%)
Frame = +3
Query: 33 LRWMSLPETQPRRLRVSFTDFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRR 212
LR + P T P SF + +IDILGR RQFDV LIVE+ + TFL+L++R
Sbjct: 95 LRSLPSPSTTP----TSF-NLIIDILGRVRQFDVVRQLIVEMDQTS----PETFLILVKR 145
Query: 213 LIAAGLTRQAIRAFDDMPCFVESK 284
LIAAGLTRQA+RAFDD PCF+E++
Sbjct: 146 LIAAGLTRQAVRAFDDAPCFLENR 169
>ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Glycine max]
Length = 510
Score = 78.6 bits (192), Expect = 8e-13
Identities = 45/75 (60%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Frame = +3
Query: 81 SFTDFMIDILGRTRQFDVT**LIVEL-QTLNLTPKSSTFLVLIRRLIAAGLTRQAIRAFD 257
SFT +ID + + RQFDV LIVE+ Q +LTP STFL LIRRLI AGLTRQA+RAF
Sbjct: 103 SFT-LLIDTMAKVRQFDVAWQLIVEMDQRHHLTPTPSTFLTLIRRLICAGLTRQAVRAFH 161
Query: 258 DMPCFVESKTSKDDF 302
D+ F E+KT+ DF
Sbjct: 162 DIDAFSETKTTPQDF 176
>ref|XP_006299538.1| hypothetical protein CARUB_v10015710mg [Capsella rubella]
gi|482568247|gb|EOA32436.1| hypothetical protein
CARUB_v10015710mg [Capsella rubella]
Length = 506
Score = 78.2 bits (191), Expect = 1e-12
Identities = 46/80 (57%), Positives = 56/80 (70%)
Frame = +3
Query: 45 SLPETQPRRLRVSFTDFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIAA 224
SLP P SF + +IDILGR RQFDV LIVE+ + TFL+L++RLIAA
Sbjct: 93 SLPSPSPPS-PTSF-NLIIDILGRVRQFDVVRQLIVEMDQTS----PETFLILVKRLIAA 146
Query: 225 GLTRQAIRAFDDMPCFVESK 284
GLTRQAIRAFDD PCF+E++
Sbjct: 147 GLTRQAIRAFDDAPCFLENR 166
>gb|ESW10509.1| hypothetical protein PHAVU_009G215700g [Phaseolus vulgaris]
Length = 509
Score = 77.0 bits (188), Expect = 2e-12
Identities = 44/80 (55%), Positives = 54/80 (67%)
Frame = +3
Query: 63 PRRLRVSFTDFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIAAGLTRQA 242
P S+T +ID L + RQFDV LIVE+ NL P +TFL LIRRL+AAGLTRQA
Sbjct: 99 PPLTHASYT-LLIDSLAKVRQFDVAWQLIVEMAQCNLHPTPATFLTLIRRLVAAGLTRQA 157
Query: 243 IRAFDDMPCFVESKTSKDDF 302
+RAF D+ F +KT+ DDF
Sbjct: 158 VRAFHDIDAF--AKTTPDDF 175
>ref|XP_006856440.1| hypothetical protein AMTR_s00047p00228510 [Amborella trichopoda]
gi|548860300|gb|ERN17907.1| hypothetical protein
AMTR_s00047p00228510 [Amborella trichopoda]
Length = 492
Score = 72.4 bits (176), Expect = 6e-11
Identities = 40/70 (57%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = +3
Query: 96 MIDILGRTRQFDVT**LIVEL-QTLNLTPKSSTFLVLIRRLIAAGLTRQAIRAFDDMPCF 272
MI+ILG+ RQFDV LI+E+ Q N+ TF +LIRR IAAG TRQAIR FDDM
Sbjct: 88 MINILGKVRQFDVAWQLIIEMGQEGNIELSEKTFGILIRRYIAAGFTRQAIRTFDDMESL 147
Query: 273 VESKTSKDDF 302
+E +TS DF
Sbjct: 148 LEKETSSSDF 157
>ref|XP_004306198.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Fragaria vesca subsp. vesca]
Length = 501
Score = 71.2 bits (173), Expect = 1e-10
Identities = 35/70 (50%), Positives = 52/70 (74%)
Frame = +3
Query: 96 MIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIAAGLTRQAIRAFDDMPCFV 275
+IDI+ + RQ+DV LI+++ P S+ FL+LIRRLIA+GLTRQA+RAFDD+ FV
Sbjct: 103 LIDIVAKVRQYDVAWQLILQMDP----PTSAAFLILIRRLIASGLTRQAVRAFDDIETFV 158
Query: 276 ESKTSKDDFL 305
+++ + DF+
Sbjct: 159 QTRPTSQDFI 168
>ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487251|gb|AES68454.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 503
Score = 70.9 bits (172), Expect = 2e-10
Identities = 32/71 (45%), Positives = 51/71 (71%)
Frame = +3
Query: 90 DFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIAAGLTRQAIRAFDDMPC 269
+ +IDI+ + QFD+ LIVE+ +NL P +TF +LI+RLI+A LTRQA+RAF+++
Sbjct: 99 NLLIDIVSKVHQFDLASQLIVEMDQINLPPTPTTFFILIKRLISANLTRQAVRAFNEIES 158
Query: 270 FVESKTSKDDF 302
+ ++K + D F
Sbjct: 159 YTDTKLTSDHF 169
>ref|XP_004516335.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like isoform X1 [Cicer arietinum]
Length = 512
Score = 68.9 bits (167), Expect = 6e-10
Identities = 32/71 (45%), Positives = 49/71 (69%)
Frame = +3
Query: 90 DFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIAAGLTRQAIRAFDDMPC 269
+ +IDI+ + QFD+ LI+E+ NLTP +TF ++I+RLIAA LTRQAIRAF+++
Sbjct: 108 NLLIDIVSKVHQFDLAWQLIIEMDQNNLTPDPTTFFIIIKRLIAANLTRQAIRAFEEIES 167
Query: 270 FVESKTSKDDF 302
+ +K + F
Sbjct: 168 YTNTKLTSQHF 178
>gb|AFW73673.1| hypothetical protein ZEAMMB73_530264 [Zea mays]
Length = 526
Score = 62.8 bits (151), Expect = 5e-08
Identities = 38/86 (44%), Positives = 48/86 (55%)
Frame = +3
Query: 45 SLPETQPRRLRVSFTDFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIAA 224
S TQPR D ++D LGR RQFD ++V+ + TF VL RR +AA
Sbjct: 110 SFVNTQPRS---DAYDAVVDALGRARQFDAAWRVVVDASA-DGAASPRTFAVLARRYVAA 165
Query: 225 GLTRQAIRAFDDMPCFVESKTSKDDF 302
G+TRQAIRAFDDM FV + +F
Sbjct: 166 GMTRQAIRAFDDMEAFVSREPDAAEF 191
>ref|XP_004966841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g13420, mitochondrial-like [Setaria italica]
Length = 526
Score = 62.4 bits (150), Expect = 6e-08
Identities = 35/84 (41%), Positives = 45/84 (53%)
Frame = +3
Query: 51 PETQPRRLRVSFTDFMIDILGRTRQFDVT**LIVELQTLNLTPKSSTFLVLIRRLIAAGL 230
P P R D ++D LGR RQFD ++V+ + TF VL RR +AAG+
Sbjct: 109 PSMAPARAPADAYDAVVDALGRARQFDAAWRVVVDASA-DGAASPRTFAVLARRYVAAGM 167
Query: 231 TRQAIRAFDDMPCFVESKTSKDDF 302
TRQAIR FDDM FV + +F
Sbjct: 168 TRQAIRTFDDMEAFVGREPDAGEF 191
>ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group]
gi|113623623|dbj|BAF23568.1| Os08g0369200 [Oryza sativa
Japonica Group] gi|125603197|gb|EAZ42522.1| hypothetical
protein OsJ_27088 [Oryza sativa Japonica Group]
gi|215740653|dbj|BAG97309.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 511
Score = 62.4 bits (150), Expect = 6e-08
Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 DFMIDILGRTRQFDVT**LIVELQTLNL-TPKSSTFLVLIRRLIAAGLTRQAIRAFDDMP 266
D ++D LGR RQFD L+VE TP+ TF VL RR +AAG+TRQA+RAFDDM
Sbjct: 107 DAVVDALGRARQFDAAWRLVVEAAADGAATPR--TFAVLARRYVAAGMTRQAVRAFDDME 164
Query: 267 CFVESKTSKDDF 302
FV + +F
Sbjct: 165 AFVGREPDAAEF 176