BLASTX nr result
ID: Rheum21_contig00030452
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00030452
(243 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004158060.1| PREDICTED: katanin p80 WD40 repeat-containin... 72 6e-11
ref|XP_004146637.1| PREDICTED: katanin p80 WD40 repeat-containin... 72 6e-11
ref|XP_006377307.1| hypothetical protein POPTR_0011s04530g [Popu... 72 8e-11
ref|XP_002264711.2| PREDICTED: katanin p80 WD40 repeat-containin... 67 2e-09
ref|XP_004496305.1| PREDICTED: katanin p80 WD40 repeat-containin... 66 4e-09
ref|XP_003593480.1| Katanin p80 WD40-containing subunit B1 [Medi... 66 5e-09
ref|XP_006583803.1| PREDICTED: katanin p80 WD40 repeat-containin... 65 7e-09
ref|XP_006597408.1| PREDICTED: katanin p80 WD40 repeat-containin... 65 9e-09
ref|XP_003545861.1| PREDICTED: katanin p80 WD40 repeat-containin... 65 9e-09
emb|CBI35743.3| unnamed protein product [Vitis vinifera] 65 1e-08
ref|XP_006594334.1| PREDICTED: katanin p80 WD40 repeat-containin... 64 3e-08
ref|XP_003541552.1| PREDICTED: katanin p80 WD40 repeat-containin... 64 3e-08
gb|ESW20210.1| hypothetical protein PHAVU_006G189900g [Phaseolus... 63 4e-08
ref|XP_002521412.1| katanin P80 subunit, putative [Ricinus commu... 63 4e-08
ref|XP_003543076.1| PREDICTED: katanin p80 WD40 repeat-containin... 63 5e-08
gb|EMJ14851.1| hypothetical protein PRUPE_ppa001393mg [Prunus pe... 62 8e-08
ref|XP_004293499.1| PREDICTED: katanin p80 WD40 repeat-containin... 61 2e-07
ref|XP_006467863.1| PREDICTED: katanin p80 WD40 repeat-containin... 60 3e-07
ref|XP_006467862.1| PREDICTED: katanin p80 WD40 repeat-containin... 60 3e-07
ref|XP_006467861.1| PREDICTED: katanin p80 WD40 repeat-containin... 60 3e-07
>ref|XP_004158060.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
[Cucumis sativus]
Length = 906
Score = 72.4 bits (176), Expect = 6e-11
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = -2
Query: 155 LHNEEPQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTKLQMLRSFWE 3
L EPQISGRD +S +D ++IEDLMQSHD+ LS LR RLTKLQ++R FWE
Sbjct: 719 LQKGEPQISGRDSTSANDRDVIEDLMQSHDVFLSTLRSRLTKLQVVRHFWE 769
>ref|XP_004146637.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
[Cucumis sativus]
Length = 922
Score = 72.4 bits (176), Expect = 6e-11
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = -2
Query: 155 LHNEEPQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTKLQMLRSFWE 3
L EPQISGRD +S +D ++IEDLMQSHD+ LS LR RLTKLQ++R FWE
Sbjct: 735 LQKGEPQISGRDSTSANDRDVIEDLMQSHDVFLSTLRSRLTKLQVVRHFWE 785
>ref|XP_006377307.1| hypothetical protein POPTR_0011s04530g [Populus trichocarpa]
gi|550327580|gb|ERP55104.1| hypothetical protein
POPTR_0011s04530g [Populus trichocarpa]
Length = 990
Score = 72.0 bits (175), Expect = 8e-11
Identities = 35/61 (57%), Positives = 46/61 (75%)
Frame = -2
Query: 185 IESNISSEVLLHNEEPQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTKLQMLRSFW 6
IE + L NEEPQISGRD +S + +++IEDLMQSHD+ L+ L+ RLTKLQ++R FW
Sbjct: 793 IECEMDRAPLNLNEEPQISGRDSTSANYKDVIEDLMQSHDVFLNTLKSRLTKLQVIRHFW 852
Query: 5 E 3
E
Sbjct: 853 E 853
>ref|XP_002264711.2| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1
[Vitis vinifera]
Length = 220
Score = 67.4 bits (163), Expect = 2e-09
Identities = 36/82 (43%), Positives = 56/82 (68%), Gaps = 8/82 (9%)
Frame = -2
Query: 224 ERWDKAISREDKPIESNISSEVL--------LHNEEPQISGRDLSSPSDENIIEDLMQSH 69
ER ++ S ED+ + +SSE++ + +PQISGR+ ++ S+EN IED++Q+H
Sbjct: 4 ERQERFNSNEDQT--TKVSSEMMPETARTSPMLKGQPQISGRESTAASEENTIEDVIQNH 61
Query: 68 DIVLSDLRYRLTKLQMLRSFWE 3
D+ +S LR RLTKLQ++R FWE
Sbjct: 62 DLFISTLRSRLTKLQVVRHFWE 83
>ref|XP_004496305.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
[Cicer arietinum]
Length = 90
Score = 66.2 bits (160), Expect = 4e-09
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = -2
Query: 182 ESNISSEVLLHNEEPQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTKLQMLRSFWE 3
E+N + + EPQ+S +D +SP++ IIE LMQ+HD+ LS LR RLTKLQ++R FWE
Sbjct: 9 ENNSNLNQIQQKVEPQVSQKDSNSPNEMEIIEGLMQTHDVTLSTLRSRLTKLQVVRHFWE 68
>ref|XP_003593480.1| Katanin p80 WD40-containing subunit B1 [Medicago truncatula]
gi|355482528|gb|AES63731.1| Katanin p80 WD40-containing
subunit B1 [Medicago truncatula]
Length = 1131
Score = 65.9 bits (159), Expect = 5e-09
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 6/83 (7%)
Frame = -2
Query: 233 EKFERWDKAISREDKPIESNISSEV------LLHNEEPQISGRDLSSPSDENIIEDLMQS 72
E+ ER + R + P N S++ + EPQ+S RD SSP++ IIE LM++
Sbjct: 912 ERKERIPRNEDRNNFPSIPNTPSDIDESPSPNIPKLEPQVSQRDSSSPNEMAIIEGLMET 971
Query: 71 HDIVLSDLRYRLTKLQMLRSFWE 3
HD+ LS+LR RLTKLQ++R FWE
Sbjct: 972 HDVTLSNLRSRLTKLQVVRHFWE 994
>ref|XP_006583803.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
[Glycine max]
Length = 726
Score = 65.5 bits (158), Expect = 7e-09
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = -2
Query: 143 EPQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTKLQMLRSFWE 3
EPQ+ GRD +S +D IIE LMQ+HD+ LS+LR RLTKLQ++R FWE
Sbjct: 543 EPQVFGRDSNSANDGEIIEGLMQTHDVTLSNLRSRLTKLQVVRHFWE 589
>ref|XP_006597408.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
isoform X2 [Glycine max]
Length = 706
Score = 65.1 bits (157), Expect = 9e-09
Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Frame = -2
Query: 227 FERWDKAISREDK----PIESNISSEVLLHNE---EPQISGRDLSSPSDENIIEDLMQSH 69
FER ++ ED+ PI IS N EPQIS D + ++E IIE LMQ+H
Sbjct: 488 FERRERNPLNEDRNNVPPIPKTISETDKSPNTVKVEPQISKEDSNPANEEEIIEGLMQTH 547
Query: 68 DIVLSDLRYRLTKLQMLRSFWE 3
D+ LS+LR RLTKLQ++R FWE
Sbjct: 548 DVTLSNLRSRLTKLQVVRHFWE 569
>ref|XP_003545861.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
isoform X1 [Glycine max]
Length = 825
Score = 65.1 bits (157), Expect = 9e-09
Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Frame = -2
Query: 227 FERWDKAISREDK----PIESNISSEVLLHNE---EPQISGRDLSSPSDENIIEDLMQSH 69
FER ++ ED+ PI IS N EPQIS D + ++E IIE LMQ+H
Sbjct: 607 FERRERNPLNEDRNNVPPIPKTISETDKSPNTVKVEPQISKEDSNPANEEEIIEGLMQTH 666
Query: 68 DIVLSDLRYRLTKLQMLRSFWE 3
D+ LS+LR RLTKLQ++R FWE
Sbjct: 667 DVTLSNLRSRLTKLQVVRHFWE 688
>emb|CBI35743.3| unnamed protein product [Vitis vinifera]
Length = 314
Score = 64.7 bits (156), Expect = 1e-08
Identities = 32/71 (45%), Positives = 47/71 (66%)
Frame = -2
Query: 215 DKAISREDKPIESNISSEVLLHNEEPQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRL 36
+ I D I + S L +PQISGR+ ++ S+EN I+D++Q+HD+ +S LR RL
Sbjct: 107 EDVIQNHDLFISTLRSRLTKLQKGQPQISGRESTAASEENTIKDVIQNHDLFISTLRSRL 166
Query: 35 TKLQMLRSFWE 3
TKLQ++R FWE
Sbjct: 167 TKLQVVRHFWE 177
Score = 61.6 bits (148), Expect = 1e-07
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 30/103 (29%)
Frame = -2
Query: 242 SLVEKFERWDKAISREDKPIESNISSEVLLHNEE-------------------------- 141
SLVE+FER +K S ED+ +N+SS+++ +E
Sbjct: 28 SLVERFERREKFNSNEDQT--TNVSSDMMPERQERFNSNEDQTTKVSSEMMPETARTSPM 85
Query: 140 ----PQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTKLQ 24
PQISGR+ ++ S+EN IED++Q+HD+ +S LR RLTKLQ
Sbjct: 86 LKGQPQISGRESTAASEENTIEDVIQNHDLFISTLRSRLTKLQ 128
>ref|XP_006594334.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
isoform X2 [Glycine max]
Length = 778
Score = 63.5 bits (153), Expect = 3e-08
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Frame = -2
Query: 233 EKFERWDKAISREDKPIESNISSEV----LLHNEEPQISGRDLSSPSDENIIEDLMQSHD 66
EK ER+ + + P N +SE EPQ+ G D +S +D IIE LMQ+HD
Sbjct: 561 EKGERFPFGDDQNNMPNVPNTTSETDKSANFLKVEPQVLGSDSNSANDGEIIEGLMQTHD 620
Query: 65 IVLSDLRYRLTKLQMLRSFWE 3
+ LS+LR RLTKLQ+++ FWE
Sbjct: 621 VTLSNLRSRLTKLQVVQHFWE 641
>ref|XP_003541552.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
isoform X1 [Glycine max]
Length = 814
Score = 63.5 bits (153), Expect = 3e-08
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Frame = -2
Query: 233 EKFERWDKAISREDKPIESNISSEV----LLHNEEPQISGRDLSSPSDENIIEDLMQSHD 66
EK ER+ + + P N +SE EPQ+ G D +S +D IIE LMQ+HD
Sbjct: 597 EKGERFPFGDDQNNMPNVPNTTSETDKSANFLKVEPQVLGSDSNSANDGEIIEGLMQTHD 656
Query: 65 IVLSDLRYRLTKLQMLRSFWE 3
+ LS+LR RLTKLQ+++ FWE
Sbjct: 657 VTLSNLRSRLTKLQVVQHFWE 677
>gb|ESW20210.1| hypothetical protein PHAVU_006G189900g [Phaseolus vulgaris]
Length = 828
Score = 63.2 bits (152), Expect = 4e-08
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = -2
Query: 143 EPQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTKLQMLRSFWE 3
EPQIS D +S ++E IIE LMQ+HD+ LS+LR RLTKLQ++R FWE
Sbjct: 645 EPQISVGDSNSANEEKIIEGLMQTHDVTLSNLRSRLTKLQVVRHFWE 691
>ref|XP_002521412.1| katanin P80 subunit, putative [Ricinus communis]
gi|223539311|gb|EEF40902.1| katanin P80 subunit,
putative [Ricinus communis]
Length = 936
Score = 63.2 bits (152), Expect = 4e-08
Identities = 28/48 (58%), Positives = 39/48 (81%)
Frame = -2
Query: 146 EEPQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTKLQMLRSFWE 3
EEPQISGRD +S + ++ E+LMQ+HD+ LS ++ RLTKLQ++R FWE
Sbjct: 752 EEPQISGRDSNSSNYRDVSEELMQAHDVFLSTIKSRLTKLQVVRHFWE 799
>ref|XP_003543076.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
[Glycine max]
Length = 824
Score = 62.8 bits (151), Expect = 5e-08
Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Frame = -2
Query: 227 FERWDKAISREDK----PIESNISSEVLLHNE---EPQISGRDLSSPSDENIIEDLMQSH 69
FER ++ ED+ P+ IS N EPQI D +S ++E IIE LMQ+H
Sbjct: 606 FERRERIPFNEDRNNLPPLPKTISETDKSPNTVKVEPQIYKEDSNSANEEKIIEGLMQTH 665
Query: 68 DIVLSDLRYRLTKLQMLRSFWE 3
D LS+LR RLTKLQ++R FWE
Sbjct: 666 DATLSNLRSRLTKLQVVRHFWE 687
>gb|EMJ14851.1| hypothetical protein PRUPE_ppa001393mg [Prunus persica]
Length = 839
Score = 62.0 bits (149), Expect = 8e-08
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 8/69 (11%)
Frame = -2
Query: 185 IESNISSEVLLHNEE--------PQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTK 30
+E++ISS V+ E+ PQISGR ++S + EDLMQ+H++ LS LR RLTK
Sbjct: 634 VETSISSPVIPEREKTSTRLKEGPQISGRHIASTKNGGPSEDLMQTHEVFLSTLRSRLTK 693
Query: 29 LQMLRSFWE 3
LQ++R FWE
Sbjct: 694 LQVVRHFWE 702
>ref|XP_004293499.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
[Fragaria vesca subsp. vesca]
Length = 803
Score = 60.8 bits (146), Expect = 2e-07
Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 33/113 (29%)
Frame = -2
Query: 242 SLVEKFERWDKAISREDK------PI-----ESNISSEVLLHN----------------- 147
+LVE+FER ++ S +D+ P+ S+ISS + +
Sbjct: 555 TLVERFERRERFSSNDDQATGIIGPVIPEDQASSISSPAIPEDQATSICSPMTIEMEKTF 614
Query: 146 -----EEPQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTKLQMLRSFWE 3
EEPQISGR +SS ++ EDLMQ+HD LS LR RLTKLQ++R FWE
Sbjct: 615 TVQREEEPQISGRHMSSAKNDPT-EDLMQTHDAFLSTLRSRLTKLQVVRHFWE 666
>ref|XP_006467863.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
isoform X3 [Citrus sinensis]
Length = 955
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/47 (57%), Positives = 36/47 (76%)
Frame = -2
Query: 143 EPQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTKLQMLRSFWE 3
EPQISGRD + ++ +E LM++HDI +S LR RLTKLQ++R FWE
Sbjct: 772 EPQISGRDTTVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWE 818
>ref|XP_006467862.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
isoform X2 [Citrus sinensis]
Length = 983
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/47 (57%), Positives = 36/47 (76%)
Frame = -2
Query: 143 EPQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTKLQMLRSFWE 3
EPQISGRD + ++ +E LM++HDI +S LR RLTKLQ++R FWE
Sbjct: 800 EPQISGRDTTVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWE 846
>ref|XP_006467861.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog
isoform X1 [Citrus sinensis]
Length = 1074
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/47 (57%), Positives = 36/47 (76%)
Frame = -2
Query: 143 EPQISGRDLSSPSDENIIEDLMQSHDIVLSDLRYRLTKLQMLRSFWE 3
EPQISGRD + ++ +E LM++HDI +S LR RLTKLQ++R FWE
Sbjct: 891 EPQISGRDTTVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWE 937