BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00029592
         (455 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript...    76   4e-12
gb|ABK28243.1| unknown [Arabidopsis thaliana]                          76   4e-12
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali...    76   4e-12
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...    72   1e-10
ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204...    71   1e-10
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript...    71   1e-10
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]               70   4e-10
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript...    69   7e-10
ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, part...    69   9e-10
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...    67   2e-09
dbj|BAA77394.1| SAE1-S9-protein [Brassica rapa]                        67   3e-09
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    66   6e-09
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    66   6e-09
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        65   9e-09
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    65   1e-08
ref|XP_006357282.1| PREDICTED: uncharacterized protein LOC102605...    64   2e-08
dbj|BAD66732.1| orf147a [Beta vulgaris subsp. vulgaris] gi|54606...    64   2e-08
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...    64   2e-08
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript...    64   3e-08
gb|AAF79357.1|AC007887_16 F15O4.34 [Arabidopsis thaliana]              63   4e-08

>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
           to a family of Arabidopsis thaliana predicted proteins,
           which have similarity to reverse transcriptases; see
           T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
           gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
           thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
           polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
 Frame = -2

Query: 448 NGKFSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQW---I 278
           + +FS   T+  +  ++   PW   +WF  + PK +FI W+  +NRL TRD +Q W   I
Sbjct: 108 SNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSI 167

Query: 277 PIDDNLCVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAPSLTTCMAWISNNHVK 98
           P +   C+LC A+  S  HL     F+  V         L+P A  L  C+ W+ +   +
Sbjct: 168 PAE---CLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPA-QLMDCLNWLLSPSRE 223

Query: 97  CNLKKKIRFSALTSFIYIIWLTRNEKI 17
            N+   IR  A  S +Y IW  RN+++
Sbjct: 224 KNICLIIRL-AFHSCVYAIWRERNQRL 249


>gb|ABK28243.1| unknown [Arabidopsis thaliana]
          Length = 297

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
 Frame = -2

Query: 448 NGKFSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQW---I 278
           + +FS   T+  +  ++   PW   +WF  + PK +FI W+  +NRL TRD +Q W   I
Sbjct: 108 SNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSI 167

Query: 277 PIDDNLCVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAPSLTTCMAWISNNHVK 98
           P +   C+LC A+  S  HL     F+  V         L+P A  L  C+ W+ +   +
Sbjct: 168 PAE---CLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPA-QLMDCLNWLLSPSRE 223

Query: 97  CNLKKKIRFSALTSFIYIIWLTRNEKI 17
            N+   IR  A  S +Y IW  RN+++
Sbjct: 224 KNICLIIRL-AFHSCVYAIWRERNQRL 249


>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
          Length = 296

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
 Frame = -2

Query: 448 NGKFSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQW---I 278
           + +FS   T+  +  ++   PW   +WF  + PK +FI W+  +NRL TRD +Q W   I
Sbjct: 108 SNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSI 167

Query: 277 PIDDNLCVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAPSLTTCMAWISNNHVK 98
           P +   C+LC A+  S  HL     F+  V         L+P A  L  C+ W+ +   +
Sbjct: 168 PAE---CLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPA-QLMDCLNWLLSPSRE 223

Query: 97  CNLKKKIRFSALTSFIYIIWLTRNEKI 17
            N+   IR  A  S +Y IW  RN+++
Sbjct: 224 KNICLIIRL-AFHSCVYAIWRERNQRL 249


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
 Frame = -2

Query: 439  FSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDNL 260
            FS   T++ MR K P   W+  +WF  + PK +F  W+S  NRLPTR  +  W       
Sbjct: 904  FSAARTWEAMRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGVTTTTD 963

Query: 259  CVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAP---SLTTCMAWISNNHVKC-N 92
            C LC + P+S +HL     F+  +    L++ +L+P      S    ++W   N  K  +
Sbjct: 964  CCLCSSRPESRDHLLLYCVFSAVIWK--LVFFRLTPSQAIFNSWAELLSWTRINSSKAPS 1021

Query: 91   LKKKIRFSALTSFIYIIWLTRN 26
            L +KI   A  + ++ +W  RN
Sbjct: 1022 LLRKI---AAQASVFHLWKQRN 1040


>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
          Length = 282

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 3/148 (2%)
 Frame = -2

Query: 451 ANGKFSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQW--- 281
           ++  FS+   ++ +R  +    WS  +W G N PK SF +WL++ +RL TR  + +W   
Sbjct: 104 SHDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAIRDRLGTRGRLSRWDRS 163

Query: 280 IPIDDNLCVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAPSLTTCMAWISNNHV 101
           IP+    C+LC    +S +HL  S  F   + + IL+    S         ++WI N  +
Sbjct: 164 IPLS---CLLCGGNYESRDHLFFSCHFGWEIWSRILLLKSSSHRTGYWGVELSWIYNQGI 220

Query: 100 KCNLKKKIRFSALTSFIYIIWLTRNEKI 17
             ++++K+      + IY IW  RN ++
Sbjct: 221 GKSVRRKLWRLLWCATIYFIWQERNHRL 248


>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 320

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 43/125 (34%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
 Frame = -2

Query: 394 NH--PWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDNLCVLCCAYPKSNEH 221
           NH  PW   +WF  + PK +FI W+  +NRL TRD ++ W      +C+LC ++ +S  H
Sbjct: 146 NHIVPWYKAVWFKNHVPKHAFICWVVAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAH 205

Query: 220 LCNSYPFTQSVLTNILIWLKLSPGAPSLTTCMAWISNNHVKCNLKKKIRFSALTSFIYII 41
           L    PF  +V         L P A  L  C+ W+ N     N    IR  A  +++Y I
Sbjct: 206 LFFECPFCGAVWRFFTGRANLFPPA-QLMYCLIWLLNPSRDKNTTLIIRL-AFQAYVYAI 263

Query: 40  WLTRN 26
           W  RN
Sbjct: 264 WRERN 268


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
 Frame = -2

Query: 448  NGKFSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPID 269
            + +FS   T+  ++  + +  W   +WF  + PK +FI W+   NRL TRD +++W    
Sbjct: 965  SNRFSTADTWSYLQPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSI 1024

Query: 268  DNLCVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAPSLTTCMAW--ISNNHVKC 95
               CVLC    +S EHL     F+  + +  +  L L+P  P    C+ W   ++     
Sbjct: 1025 PPTCVLCNDLDESREHLFFRCQFSSEIWSFFMRALNLNP-PPQFMHCLLWTLTASRDRNI 1083

Query: 94   NLKKKIRFSALTSFIYIIWLTRNEKI 17
             L  K+ F A    +Y IW  RN +I
Sbjct: 1084 TLITKLLFHA---SVYFIWRERNLRI 1106


>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 289

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
 Frame = -2

Query: 439 FSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDNL 260
           FS   T+D +R +AP   W+  +WF    PK +F  W+S  +RLPTR  +  W  I    
Sbjct: 109 FSSARTWDAIRPRAPELDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFD 168

Query: 259 CVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAP---SLTTCMAWI-SNNHVKCN 92
           C LC    +S +HL  S  F   V    L + +L P      S    ++W+ S++    +
Sbjct: 169 CCLCTIETESRDHLLFSCEFAAQVWR--LAFSRLCPRQRLFCSWAELLSWMRSSSSSAPS 226

Query: 91  LKKKIRFSALTSFIYIIWLTRN 26
           L +K+   A+   IY IW  RN
Sbjct: 227 LLRKVSAHAI---IYNIWRQRN 245


>ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, partial [Capsella rubella]
           gi|482569649|gb|EOA33837.1| hypothetical protein
           CARUB_v10021318mg, partial [Capsella rubella]
          Length = 290

 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
 Frame = -2

Query: 445 GKFSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDD 266
           G FS   T+       P  PW   +WF    PK +FISW+ + NRL TRD ++ W     
Sbjct: 93  GVFSTSKTWISTHPAGPLVPWFKSVWFKERIPKHAFISWVVIRNRLTTRDRLRGWGMNVP 152

Query: 265 NLCVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAPSLTTCMAWI-SNNHVKCNL 89
           + C+LC +  +S  HL     ++  V ++      LSP A      +AW+ S+   K   
Sbjct: 153 SECLLCTSSAESRLHLFFECAYSHEVWSSFFTHPSLSPPA-MFEDIVAWVRSSRSKKLRT 211

Query: 88  KKKIRFSALTSFIYIIWLTRNEKI 17
             K+ F A+   +Y +W  RN ++
Sbjct: 212 ICKLIFQAV---VYGLWRERNSRL 232


>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
 Frame = -2

Query: 439 FSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDNL 260
           FS   T+  +       PW   +WF    PK +FI W++ + RL TRD + QW      +
Sbjct: 136 FSASKTWTALNPDGVLVPWQKSVWFKDRIPKHAFICWVAAWKRLHTRDRLTQWGLNIPTV 195

Query: 259 CVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAPSL-TTCMAWISNNHVKCNLKK 83
           CVLC    ++++HL     F+  + +  +I   ++P  P L    + W+ +     NL  
Sbjct: 196 CVLCNVVDETHDHLFFQCQFSNEIWSFFMIRAGMTP--PHLFGPILLWLKSASSSKNLSL 253

Query: 82  KIRFSALTSFIYIIWLTRNEKI 17
            I+     S +Y+IW  RN +I
Sbjct: 254 IIKLLFQAS-VYLIWRERNCRI 274


>dbj|BAA77394.1| SAE1-S9-protein [Brassica rapa]
          Length = 255

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 38/113 (33%), Positives = 55/113 (48%)
 Frame = -2

Query: 442 KFSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDN 263
           KFS   T++++   +P   W S + F    P+C+FI+WL++  RLPTRD +  W     N
Sbjct: 109 KFSSKVTWELLCVPSPEVTWHSTVGFKEEVPRCTFITWLAMLERLPTRDRLISWGLTVPN 168

Query: 262 LCVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAPSLTTCMAWISNNH 104
            CVLC    +S+ HL     F   V  +       SP  P L T +A+    H
Sbjct: 169 SCVLCNGGVESHSHLFFECSFAVGVWLHFCGRSMTSP-PPDLQTVVAYCQQLH 220


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 39/141 (27%), Positives = 65/141 (46%)
 Frame = -2

Query: 439  FSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDNL 260
            FS+  TY +++    N  W   I     TPK  FI WL++ NRL T + + +W      L
Sbjct: 942  FSIKKTYKLLQEDYENVVWKRLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPL 1001

Query: 259  CVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAPSLTTCMAWISNNHVKCNLKKK 80
            C +C    ++ +HL  +  +++ +   +L++L L P A +       I         + K
Sbjct: 1002 CKMCGNEIETIQHLFFNCIYSKEIWGKVLLYLNLQPQADAQAKKELAIKKAR-STKDRNK 1060

Query: 79   IRFSALTSFIYIIWLTRNEKI 17
            +     T  +Y IWL RN K+
Sbjct: 1061 LYVMMFTESVYAIWLLRNAKV 1081


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 40/140 (28%), Positives = 65/140 (46%)
 Frame = -2

Query: 439 FSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDNL 260
           FS   T+   R + P + W   IWF   TPK SFI+WL+  NRL T D +  W    +  
Sbjct: 257 FSTKETWADTREQKPRNEWYQGIWFSHATPKYSFITWLATKNRLSTGDRMMSWNAGVNLS 316

Query: 259 CVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAPSLTTCMAWISNNHVKCNLKKK 80
           CV C    ++  HL  +  +++ V + +   L     +   TT +  +++  +  N    
Sbjct: 317 CVFCQEQTETRNHLFFTCRYSREVWSGLTSKLLTRHYSTDWTTILKLLTDKTLGNNRLFL 376

Query: 79  IRFSALTSFIYIIWLTRNEK 20
           +R+ A    +Y IW  RN +
Sbjct: 377 LRY-AFQILVYSIWKERNSR 395


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 65.1 bits (157), Expect = 9e-09
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
 Frame = -2

Query: 439  FSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDNL 260
            FS   T++ +R KA    W+S IWF    PK +F  W+S  NRL TR  +  W  I  + 
Sbjct: 1033 FSAAKTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDA 1092

Query: 259  CVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGA---PSLTTCMAWISNNHVKC-N 92
            CVLC    +S +HL     F+  V    L++ ++ P      S +  ++W+  +  +   
Sbjct: 1093 CVLCSFASESRDHLLLICEFSAQVWR--LVFRRICPRQRLFSSWSELLSWVRQSSPEAPP 1150

Query: 91   LKKKIRFSALTSFIYIIWLTRN 26
            L +KI    +   +Y +W  RN
Sbjct: 1151 LLRKIVSQVV---VYNLWRQRN 1169


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
 Frame = -2

Query: 439  FSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDNL 260
            FS   T+   R+ +   PW   IWF   TPK SF SWL+   RLPT D +  W       
Sbjct: 1038 FSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATD 1097

Query: 259  CVLCCAYPKSNEHLCNSYPFTQSVLTNILIWLKLSPGAPSLTTCMAWIS-----NNHVKC 95
            C+ C    ++ +HL  +  FT       +IW+ L+ G         W S      N    
Sbjct: 1098 CIFCQGTLETRDHLFFTCSFTS------VIWVDLARGIFKTQYTSHWQSIIEAITNSQHH 1151

Query: 94   NLKKKIRFSALTSFIYIIWLTRN 26
             ++  +R     + IYI+W  RN
Sbjct: 1152 RVEWFLRRYVFQATIYIVWRERN 1174


>ref|XP_006357282.1| PREDICTED: uncharacterized protein LOC102605115 [Solanum tuberosum]
          Length = 201

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
 Frame = -2

Query: 388 PWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDNLCVLCCAYPKSNEHLCNS 209
           PW   ++  F  PK  F  WL L NRL T D +++W    +  CVLC  + +S +H+   
Sbjct: 41  PWKCLMFQNFARPKAVFTMWLQLQNRLNTTDRLKKWGLDIELKCVLCRLHLESRDHMYTR 100

Query: 208 YPFTQSVLTNILIWLKLSPGAP--SLTTCMAWISNNHVKCNLKKKIRFSALTSFIYIIWL 35
            P++Q V + +L W++    AP  + +  +  I +         +I     T ++Y IW+
Sbjct: 101 CPYSQQVWSKLLQWIQFVQ-APYNNWSQYVLGIIDAAKGKTPTAQIFKLVYTEYVYAIWI 159

Query: 34  TRNEKILE 11
            RN +I E
Sbjct: 160 ERNHRIFE 167


>dbj|BAD66732.1| orf147a [Beta vulgaris subsp. vulgaris] gi|54606753|dbj|BAD66776.1|
           orf147a [Beta vulgaris subsp. vulgaris]
          Length = 147

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
 Frame = -2

Query: 361 FNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDNLCVLCCAYPKSNEHLCNSYPFTQSVLT 182
           F+ PKC+FI+WL++ +RL T D +Q++  + D LCVLC    ++ +HL     F+  + +
Sbjct: 9   FSPPKCTFITWLTILDRLATCDRLQKFGIVCDQLCVLCGNVDETRDHLFFVCEFSYEIWS 68

Query: 181 NILIWLKLSPGAPSLTTCMAWISNNHVKCNLKKKIRFSALTSF-IYIIWLTRNEK 20
           ++L WL +   A         + + H + N      F    S  +Y IW  RN +
Sbjct: 69  SLLCWLGIQRTAGD---WQGVLQSAHCQSNSSASCIFRMCISIAVYFIWRERNAR 120


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
 Frame = -2

Query: 442  KFSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDN 263
            +FS   T++ +R  A    W   +WF   TPK SF  WL+  +RL T D +  W  +   
Sbjct: 1261 QFSTRDTWNNIRTTATKVTWYKGVWFYQATPKFSFCVWLAALDRLSTGDRMANWKGVSSG 1320

Query: 262  LCVLCCAYPKSNEHLCNSYPFTQSVLT----NILIWLKLSPGAPSLTTCMAWISNNHVKC 95
             CV C    KS +HL  + P++  V T    NIL   + +     L   ++ +  N V+ 
Sbjct: 1321 SCVFCNHPTKSRDHLFFNCPYSSEVWTVTAKNILT-TRFTTDWHLLLNTVSSLQQNRVEN 1379

Query: 94   NLKKKIRFSALTSFIYIIWLTRNEK 20
             L   +R+ A  + +Y IW  RN +
Sbjct: 1380 FL---VRY-AFQASVYSIWSERNRR 1400


>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 295

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 5/146 (3%)
 Frame = -2

Query: 439 FSLGYTYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDNL 260
           FS   T++ +R  +P  PW+  +WF    P+ S I+W+S   RLPTRD ++ W     + 
Sbjct: 109 FSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSS 168

Query: 259 CVLCCAYPKSNEHLCNSYPFTQSVLTNILIW----LKLSPGAP-SLTTCMAWISNNHVKC 95
            VLC    +++ HL     F      ++ IW     K  P  P  L    +WI    ++ 
Sbjct: 169 WVLCSNGDETHAHLFFECSF------SLAIWEFFASKFRPSPPFGLPAASSWILQLPLRS 222

Query: 94  NLKKKIRFSALTSFIYIIWLTRNEKI 17
           +    ++   L S +Y +W  RN +I
Sbjct: 223 HSTTILKL-LLQSAVYHVWKERNARI 247


>gb|AAF79357.1|AC007887_16 F15O4.34 [Arabidopsis thaliana]
          Length = 236

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 31/83 (37%), Positives = 44/83 (53%)
 Frame = -2

Query: 424 TYDVMRNKAPNHPWSSRIWFGFNTPKCSFISWLSLFNRLPTRDHIQQWIPIDDNLCVLCC 245
           T + MR  + +  W   +WFG +TPK SF  WL++ NRL T D +  W       CVLC 
Sbjct: 89  TLNHMRTISMDVDWYKGVWFGHSTPKYSFCVWLAVLNRLSTGDRMTHWNGGQSAACVLCH 148

Query: 244 AYPKSNEHLCNSYPFTQSVLTNI 176
             P++ +HL  S  F   V +N+
Sbjct: 149 NAPETRDHLFFSCDFASIVWSNL 171