BLASTX nr result
ID: Rheum21_contig00029296
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00029296
(305 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006574082.1| PREDICTED: uncharacterized protein LOC102670... 80 7e-18
gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha... 55 9e-09
emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera] 65 9e-09
emb|CAN62533.1| hypothetical protein VITISV_030700 [Vitis vinifera] 65 9e-09
emb|CAB10380.1| reverse transcriptase like protein [Arabidopsis ... 53 1e-07
ref|XP_006606948.1| PREDICTED: uncharacterized protein LOC102661... 45 2e-07
gb|AAF63122.1|AC009526_7 Hypothetical protein [Arabidopsis thali... 50 2e-07
emb|CAN82859.1| hypothetical protein VITISV_025377 [Vitis vinifera] 60 3e-07
ref|XP_004966833.1| PREDICTED: uncharacterized protein LOC101766... 52 3e-07
emb|CAN79641.1| hypothetical protein VITISV_017030 [Vitis vinifera] 59 5e-07
emb|CAN64509.1| hypothetical protein VITISV_041217 [Vitis vinifera] 59 7e-07
emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera] 59 7e-07
emb|CAN78042.1| hypothetical protein VITISV_041808 [Vitis vinifera] 57 3e-06
gb|AEJ07956.1| putative polyprotein [Sorghum propinquum] 52 5e-06
gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana] 44 7e-06
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana] 47 7e-06
emb|CAB46043.1| retrotransposon like protein [Arabidopsis thalia... 48 1e-05
gb|AAD43604.1|AC005698_3 T3P18.3 [Arabidopsis thaliana] 46 1e-05
>ref|XP_006574082.1| PREDICTED: uncharacterized protein LOC102670255 [Glycine max]
Length = 567
Score = 80.1 bits (196), Expect(2) = 7e-18
Identities = 39/50 (78%), Positives = 41/50 (82%)
Frame = -1
Query: 212 GIVTRSKKNITKPITKLNLHVQISSHIEPRTITQALRDPAWRAAMQREFD 63
GI+TRSK NI KPI K NLHVQ SS IEP TITQALRDP WR+AMQ EFD
Sbjct: 422 GIITRSKNNIIKPIQKHNLHVQASSPIEPNTITQALRDPDWRSAMQAEFD 471
Score = 35.8 bits (81), Expect(2) = 7e-18
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -3
Query: 69 VRRSPDQNIIGSKWVYRVKFLPD 1
V RS DQN++G KWV+R+K PD
Sbjct: 482 VSRSSDQNLVGCKWVFRIKRNPD 504
>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
gi|225898008|dbj|BAH30336.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1459
Score = 55.1 bits (131), Expect(2) = 9e-09
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Frame = -1
Query: 203 TRSKKNITKPITKLNLHVQISS-HI-EPRTITQALRDPAWRAAMQREFDVRR 54
TRSK NITKP TK +L V ++ H+ EP T+TQAL+D WR AM EFD ++
Sbjct: 923 TRSKNNITKPKTKTSLTVALTQPHLSEPNTVTQALKDKKWRFAMSDEFDAQQ 974
Score = 30.0 bits (66), Expect(2) = 9e-09
Identities = 8/20 (40%), Positives = 18/20 (90%)
Frame = -3
Query: 60 SPDQNIIGSKWVYRVKFLPD 1
+P Q+++G +WV+++K+LP+
Sbjct: 985 NPTQHLVGCRWVFKLKYLPN 1004
>emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]
Length = 1172
Score = 65.1 bits (157), Expect = 9e-09
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = -1
Query: 203 TRSKKNITKPITKLNLHVQISS--HIEPRTITQALRDPAWRAAMQREFDVRRIRI*LVPN 30
TR+K NI KPI KLNLH+Q+S +EP T TQAL+DP WR AM E+D LV N
Sbjct: 629 TRAKNNIRKPIQKLNLHIQLSKPLDLEPTTPTQALKDPKWRKAMSEEYDA------LVRN 682
Query: 29 GSTE 18
G+ E
Sbjct: 683 GTWE 686
>emb|CAN62533.1| hypothetical protein VITISV_030700 [Vitis vinifera]
Length = 731
Score = 65.1 bits (157), Expect = 9e-09
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = -1
Query: 203 TRSKKNITKPITKLNLHVQISS--HIEPRTITQALRDPAWRAAMQREFDVRRIRI*LVPN 30
TR+K NI KPI KLNLH+Q+S +EP T TQAL+DP WR AM E+D LV N
Sbjct: 666 TRAKNNIRKPIQKLNLHIQLSKPLDLEPTTPTQALKDPKWRKAMSEEYDA------LVRN 719
Query: 29 GSTE 18
G+ E
Sbjct: 720 GTWE 723
>emb|CAB10380.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268350|emb|CAB78643.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 1942
Score = 52.8 bits (125), Expect(2) = 1e-07
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = -1
Query: 209 IVTRSKKNITKPITKLNLHVQISSHIEPRTITQALRDPAWRAAMQREFD 63
++TRSKK ITKP + L + EP+T+T+AL+ P W AAM E+D
Sbjct: 781 MITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYD 829
Score = 52.8 bits (125), Expect(2) = 1e-07
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = -1
Query: 209 IVTRSKKNITKPITKLNLHVQISSHIEPRTITQALRDPAWRAAMQREFD 63
++TRSKK ITKP + L + EP+T+T+AL+ P W AAM E+D
Sbjct: 1681 MITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYD 1729
Score = 28.5 bits (62), Expect(2) = 1e-07
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 54 DQNIIGSKWVYRVKFLPD 1
D N++GSKWV+R K D
Sbjct: 845 DMNVLGSKWVFRTKLNAD 862
Score = 28.5 bits (62), Expect(2) = 1e-07
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 54 DQNIIGSKWVYRVKFLPD 1
D N++GSKWV+R K D
Sbjct: 1745 DMNVLGSKWVFRTKLNAD 1762
>ref|XP_006606948.1| PREDICTED: uncharacterized protein LOC102661023 [Glycine max]
Length = 592
Score = 44.7 bits (104), Expect(2) = 2e-07
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -1
Query: 143 SSHIEPRTITQALRDPAWRAAMQREFD 63
SS IE TITQALRDP WR+AMQ EFD
Sbjct: 486 SSPIESNTITQALRDPDWRSAMQAEFD 512
Score = 35.8 bits (81), Expect(2) = 2e-07
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -3
Query: 69 VRRSPDQNIIGSKWVYRVKFLPD 1
V RS DQN++G KWV+R+K PD
Sbjct: 523 VSRSSDQNLVGCKWVFRIKRNPD 545
>gb|AAF63122.1|AC009526_7 Hypothetical protein [Arabidopsis thaliana]
Length = 559
Score = 50.4 bits (119), Expect(2) = 2e-07
Identities = 23/49 (46%), Positives = 31/49 (63%)
Frame = -1
Query: 209 IVTRSKKNITKPITKLNLHVQISSHIEPRTITQALRDPAWRAAMQREFD 63
+VTRSKK I KP + L + EP+T+T+AL+ P W AAM E+D
Sbjct: 131 MVTRSKKGIIKPNPRYGLLTHKVKNAEPKTVTEALKHPGWTAAMHEEYD 179
Score = 30.0 bits (66), Expect(2) = 2e-07
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 60 SPDQNIIGSKWVYRVKFLPD 1
+PD N++GSKWV++ K D
Sbjct: 193 TPDMNVLGSKWVFQTKLNAD 212
>emb|CAN82859.1| hypothetical protein VITISV_025377 [Vitis vinifera]
Length = 1578
Score = 60.1 bits (144), Expect = 3e-07
Identities = 34/66 (51%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = -1
Query: 209 IVTRSKKNITKPITKLNLHVQIS--SHIEPRTITQALRDPAWRAAMQREFDVRRIRI*LV 36
+ TR+K NI KP+TK+NL +S S IEP T+ QAL DP WR AM EFD LV
Sbjct: 1512 MTTRAKNNIHKPLTKMNLIAVLSQPSGIEPHTVNQALTDPKWRQAMNDEFDA------LV 1565
Query: 35 PNGSTE 18
NG+ E
Sbjct: 1566 QNGTWE 1571
>ref|XP_004966833.1| PREDICTED: uncharacterized protein LOC101766505 [Setaria italica]
Length = 943
Score = 52.4 bits (124), Expect(2) = 3e-07
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = -1
Query: 218 DRGIVTRSKKNITKPITKLNLHVQISSHIEPRTITQALRDPAWRAAMQREFD 63
D G+ TR K +P+ +LNLH S + P++ AL DP WRAAMQ EFD
Sbjct: 496 DHGMRTRGKSGFRQPVDRLNLHTTTLSAV-PKSFRSALADPHWRAAMQAEFD 546
Score = 27.3 bits (59), Expect(2) = 3e-07
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 75 T*VRRSPDQNIIGSKWVYRVKFLPD 1
T V R NII KW++R KFL D
Sbjct: 555 TLVPRPSGVNIITGKWIFRHKFLAD 579
>emb|CAN79641.1| hypothetical protein VITISV_017030 [Vitis vinifera]
Length = 542
Score = 59.3 bits (142), Expect = 5e-07
Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Frame = -1
Query: 209 IVTRSKKNITKPITKLNLHVQIS--SHIEPRTITQALRDPAWRAAMQREFD--VRRIRI* 42
+ TR+K NI KP+TK+NL V I S+IEP TI+QAL DP WR AM FD VR
Sbjct: 127 MTTRAKNNIHKPLTKMNLTVVIXQPSNIEPHTISQALXDPKWRQAMNDXFDAXVRNGTWE 186
Query: 41 LVPNGSTE 18
LVP+ S +
Sbjct: 187 LVPSTSMQ 194
>emb|CAN64509.1| hypothetical protein VITISV_041217 [Vitis vinifera]
Length = 1269
Score = 58.9 bits (141), Expect = 7e-07
Identities = 35/67 (52%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Frame = -1
Query: 209 IVTRSKKNITKPITKLNLHVQISSH-IEPRTITQALRDPAWRAAMQREFD--VRRIRI*L 39
IVT SK NI KPI KLNL Q+ +EP T+TQAL+DP WR A EFD +R L
Sbjct: 785 IVTXSKHNIHKPIQKLNLTAQLQQPTLEPTTVTQALKDPKWRQAXSAEFDXLLRNGTWDL 844
Query: 38 VPNGSTE 18
VP+ T+
Sbjct: 845 VPSHPTQ 851
>emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera]
Length = 1112
Score = 58.9 bits (141), Expect = 7e-07
Identities = 30/50 (60%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = -1
Query: 209 IVTRSKKNITKPITKLNLHVQISSH-IEPRTITQALRDPAWRAAMQREFD 63
IVTRSK NI KPI K NL + +EP T+TQAL+DP WR AM EFD
Sbjct: 590 IVTRSKHNIHKPIQKXNLTAXLQQPTLEPTTVTQALKDPKWRQAMSAEFD 639
>emb|CAN78042.1| hypothetical protein VITISV_041808 [Vitis vinifera]
Length = 595
Score = 57.0 bits (136), Expect = 3e-06
Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Frame = -1
Query: 209 IVTRSKKNITKPITKLNLHVQISS--HIEPRTITQALRDPAWRAAMQREFDVRRIRI*LV 36
+ TR+K NI KPI KLNL Q+S +EP +TQAL+DP W AM E+D LV
Sbjct: 127 MTTRAKNNIRKPIQKLNLSTQLSHPYDVEPTIVTQALKDPKWHWAMFEEYDA------LV 180
Query: 35 PNGSTE 18
NG+ E
Sbjct: 181 RNGTWE 186
>gb|AEJ07956.1| putative polyprotein [Sorghum propinquum]
Length = 534
Score = 51.6 bits (122), Expect(2) = 5e-06
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = -1
Query: 203 TRSKKNITKPITKLNLHVQISSHIEPRTITQALRDPAWRAAMQREFD 63
TR K I +P+ +LNLHV S + PR++ AL DP WR+AMQ EFD
Sbjct: 3 TRGKSGIAQPVDRLNLHVVPVSPL-PRSVRDALSDPNWRSAMQAEFD 48
Score = 24.3 bits (51), Expect(2) = 5e-06
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 69 VRRSPDQNIIGSKWVYRVKFLPD 1
V R P N++ KW++R K D
Sbjct: 59 VPRPPGVNVVTGKWIFRHKLHAD 81
>gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana]
Length = 1534
Score = 43.9 bits (102), Expect(2) = 7e-06
Identities = 30/62 (48%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Frame = -1
Query: 203 TRSKKNITKPITKLNL---HVQISSHIEPRTITQALRDPAWRAAMQREFD--VRRIRI*L 39
TR+K +ITKP TKL+L VQ I P T+ QALRD WR AM E + +R L
Sbjct: 998 TRAKNHITKPKTKLSLLAKTVQTRPQI-PNTVNQALRDEKWRNAMGEEINAQIRNNTFEL 1056
Query: 38 VP 33
VP
Sbjct: 1057 VP 1058
Score = 31.2 bits (69), Expect(2) = 7e-06
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = -3
Query: 57 PDQNIIGSKWVYRVKFLPD 1
P+QN+I +KW++ +K+LP+
Sbjct: 1061 PNQNVISTKWIFTLKYLPN 1079
>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 46.6 bits (109), Expect(2) = 7e-06
Identities = 23/49 (46%), Positives = 31/49 (63%)
Frame = -1
Query: 209 IVTRSKKNITKPITKLNLHVQISSHIEPRTITQALRDPAWRAAMQREFD 63
++TRSK I KP + L V SS EP+TIT A++ P+W AA+ E D
Sbjct: 851 MITRSKDGIQKPNPRYALIVSKSSFDEPKTITTAMKHPSWNAAVMDEID 899
Score = 28.5 bits (62), Expect(2) = 7e-06
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 69 VRRSPDQNIIGSKWVYRVKFLPD 1
V + D NI+ SKWV++ K PD
Sbjct: 910 VPATEDMNILTSKWVFKTKLKPD 932
>emb|CAB46043.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268438|emb|CAB80958.1| retrotransposon like protein
[Arabidopsis thaliana]
Length = 1474
Score = 47.8 bits (112), Expect(2) = 1e-05
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = -1
Query: 203 TRSKKNITKPITKLNLHVQIS--SHIEPRTITQALRDPAWRAAMQREFDVRR 54
TR+K NI KP TK +L + S EP +TQAL+D WR AM EFD ++
Sbjct: 939 TRAKNNIKKPNTKFSLTATLPNRSPSEPTNVTQALKDKKWRFAMSDEFDAQQ 990
Score = 26.9 bits (58), Expect(2) = 1e-05
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = -3
Query: 51 QNIIGSKWVYRVKFLPD 1
Q ++G KWV+++K+LP+
Sbjct: 1003 QLLVGCKWVFKLKYLPN 1019
>gb|AAD43604.1|AC005698_3 T3P18.3 [Arabidopsis thaliana]
Length = 1309
Score = 46.2 bits (108), Expect(2) = 1e-05
Identities = 23/49 (46%), Positives = 30/49 (61%)
Frame = -1
Query: 209 IVTRSKKNITKPITKLNLHVQISSHIEPRTITQALRDPAWRAAMQREFD 63
++TRSK I KP + L V SS EP+TIT A++ P W AA+ E D
Sbjct: 694 MITRSKDGIQKPNPRYALIVSKSSFDEPKTITTAMKHPGWNAAVMDEID 742
Score = 28.5 bits (62), Expect(2) = 1e-05
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 69 VRRSPDQNIIGSKWVYRVKFLPD 1
V + D NI+ SKWV++ K PD
Sbjct: 753 VPATEDMNILTSKWVFKTKLKPD 775