BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00029178
         (770 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc...   123   3e-44
gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryz...   121   6e-44
gb|ABA97308.2| retrotransposon protein, putative, Ty1-copia subc...   116   9e-43
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc...   119   3e-42
emb|CAD41329.2| OJ991113_30.13 [Oryza sativa Japonica Group]          121   6e-39
emb|CAE04897.3| OSJNBa0042I15.19 [Oryza sativa Japonica Group]        120   5e-38
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   119   1e-34
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     126   2e-34
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   117   2e-34
gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subc...    92   2e-34
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   115   5e-34
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]   114   6e-34
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   109   8e-34
ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group] g...   113   1e-33
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   110   2e-33
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   108   3e-31
emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]   111   4e-31
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]   114   5e-31
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     105   6e-31
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        107   8e-31

>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 424

 Score =  123 bits (308), Expect(2) = 3e-44
 Identities = 68/189 (35%), Positives = 110/189 (58%), Gaps = 2/189 (1%)
 Frame = +2

Query: 209 QRERQHASSDKSQGDGLY--AGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGK 382
           +R +++ + + SQ + L   A ++ + G  K KEK                 A CY C +
Sbjct: 185 RRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEK----------------GARCYKCHE 228

Query: 383 TGHYKRECTNKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYS 562
            GH +R C   K+   R  G +S +A   + ++SDS   ++L+V++    ++W+LD+  S
Sbjct: 229 FGHIRRNCPLLKK---RKDGIASLAA---RGDDSDSSSHEILTVSNEKSGEAWMLDSASS 282

Query: 563 FHMTPNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRK 742
           +H+T  +EWF SYK+G+   V LGD+ +  VVG+G +K +M+D     L+DVRH+P LRK
Sbjct: 283 YHVTSKREWFSSYKSGDFGVVYLGDDTSYRVVGVGDVKFKMYDGNEVLLSDVRHVPGLRK 342

Query: 743 NLISLGTLH 769
           +LISLG+LH
Sbjct: 343 SLISLGSLH 351



 Score = 82.8 bits (203), Expect(2) = 3e-44
 Identities = 39/66 (59%), Positives = 53/66 (80%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           E SD+ +HV+ FNQ+V DL ++DVKLDDED+A+ILLCSLPP+YE +VT LT GK+ I  E
Sbjct: 115 EESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTILTHGKDTIKTE 174

Query: 183 TVTTAL 200
            +++ L
Sbjct: 175 IISSLL 180


>gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryza sativa Japonica
           Group] gi|108706491|gb|ABF94286.1| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 556

 Score =  121 bits (303), Expect(2) = 6e-44
 Identities = 68/189 (35%), Positives = 109/189 (57%), Gaps = 2/189 (1%)
 Frame = +2

Query: 209 QRERQHASSDKSQGDGLY--AGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGK 382
           +R +++ + + SQ + L   A ++ + G  K KEK                 A CY C +
Sbjct: 317 RRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEK----------------GARCYKCHE 360

Query: 383 TGHYKRECTNKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYS 562
            GH +R C   K+   R  G +S +A   + +NSDS   ++L+V++    ++W+LD+  S
Sbjct: 361 FGHIRRNCPLLKK---RKGGIASLAA---RGDNSDSSSHEILTVSNEKSGEAWMLDSASS 414

Query: 563 FHMTPNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRK 742
           +H+T   EWF SYK+G+   V LG++ +  V+G+G IK +M+D     L+DVRH+P LRK
Sbjct: 415 YHVTSKWEWFSSYKSGDFGVVYLGNDTSYRVIGVGDIKFKMYDGNEVLLSDVRHVPGLRK 474

Query: 743 NLISLGTLH 769
           +LISLG+LH
Sbjct: 475 SLISLGSLH 483



 Score = 83.6 bits (205), Expect(2) = 6e-44
 Identities = 38/70 (54%), Positives = 56/70 (80%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           E SD+ +HV+ FNQ+V DL ++DVKLDDED+A+ILLCSLPP++E +VT LT GK+ +  E
Sbjct: 246 EESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSFEHVVTTLTHGKDTVKTE 305

Query: 183 TVTTALVAHN 212
            + ++L+A +
Sbjct: 306 EIISSLLARD 315


>gb|ABA97308.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 407

 Score =  116 bits (290), Expect(2) = 9e-43
 Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 2/186 (1%)
 Frame = +2

Query: 218 RQHASSDKSQGDGLYAGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTGHYK 397
           R++   + SQ +GL    +    + K  +K+                  C+ C + GH  
Sbjct: 172 RKNKEGETSQAEGLLVKEDHAGHKVKKNKKKK--------------MVQCFRCDEWGHIS 217

Query: 398 RECTNKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDS--WILDTGYSFHM 571
           REC   K          +K+  V  + +SDS   D+L+++S    D+  WILD+  SFH+
Sbjct: 218 RECPTLK--------GKAKANTVTSSNDSDSDGCDLLTMSSAQSKDAEAWILDSASSFHV 269

Query: 572 TPNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRKNLI 751
           TP KEWF SYK+G    V LGD+ +   VG+G++K+++ D     L  VRH+P  ++NLI
Sbjct: 270 TPRKEWFSSYKSGEFGFVYLGDDTSYPAVGVGEVKIKLEDGGEHVLQGVRHVPGQKRNLI 329

Query: 752 SLGTLH 769
           SL TLH
Sbjct: 330 SLETLH 335



 Score = 84.7 bits (208), Expect(2) = 9e-43
 Identities = 38/71 (53%), Positives = 56/71 (78%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           EG+D+  HVN FNQ+V DL ++DV++DDED+A++ LCSLP +YE +VT LT GKE I  +
Sbjct: 100 EGADLTVHVNVFNQLVTDLVKMDVEVDDEDKAIVFLCSLPESYEHVVTTLTYGKETIKTK 159

Query: 183 TVTTALVAHNE 215
            +T+AL+A ++
Sbjct: 160 DITSALLARDQ 170


>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 425

 Score =  119 bits (297), Expect(2) = 3e-42
 Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 2/189 (1%)
 Frame = +2

Query: 209 QRERQHASSDKSQGDGLY--AGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGK 382
           +R  ++ + + SQ + L   A ++ + G  K K+K                 A CY C +
Sbjct: 186 RRSNKNEAMEASQAESLLVKAKHDHEAGVSKSKDK----------------GARCYKCHE 229

Query: 383 TGHYKRECTNKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYS 562
            GH +R C   K+   R  G +S +A   + ++SDS   + L+V++    ++W+LD+  S
Sbjct: 230 FGHIRRNCPLLKK---RKGGIASLAA---RGDDSDSSSHETLTVSNEKSGEAWMLDSASS 283

Query: 563 FHMTPNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRK 742
           +H+T  +EWF SYK+G+   V LGD+ +  VVG+G +K  M+D     L+DVRH+P LRK
Sbjct: 284 YHVTSKREWFSSYKSGDFGVVYLGDDTSYRVVGVGDVKFEMYDGNEVLLSDVRHMPGLRK 343

Query: 743 NLISLGTLH 769
           +LISLG+LH
Sbjct: 344 SLISLGSLH 352



 Score = 80.5 bits (197), Expect(2) = 3e-42
 Identities = 38/70 (54%), Positives = 53/70 (75%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           E SD+ +HV+ FNQ+V DL ++DVKLDDED A+ILLCSLPP+YE +VT L  GK+ +  E
Sbjct: 115 EESDLRKHVDVFNQLVVDLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTLMHGKDTVKTE 174

Query: 183 TVTTALVAHN 212
              ++L+A +
Sbjct: 175 EKISSLLARD 184


>emb|CAD41329.2| OJ991113_30.13 [Oryza sativa Japonica Group]
          Length = 353

 Score =  121 bits (304), Expect(2) = 6e-39
 Identities = 68/189 (35%), Positives = 111/189 (58%), Gaps = 2/189 (1%)
 Frame = +2

Query: 209 QRERQHASSDKSQGDGLY--AGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGK 382
           +R +++ +++ SQ + L   A ++ + G  K KEK                 A CY C +
Sbjct: 114 RRSKKNEATEASQAESLLVKAKHDYEAGVSKSKEK----------------GARCYKCHE 157

Query: 383 TGHYKRECTNKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYS 562
            GH +R C   K+   R  G +S +A   + ++SDS   ++L+V++    ++W+LD+  S
Sbjct: 158 FGHIRRICPLLKK---RKGGIASLAA---RGDDSDSSSHEILTVSNEKSGEAWMLDSASS 211

Query: 563 FHMTPNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRK 742
           +H+T  +EWF SYK+G+   V LGD+ +  VVG+G +K +M+D     L+DVRH+P LRK
Sbjct: 212 YHVTSKREWFSSYKSGDFGVVYLGDDTSYRVVGVGDVKFKMYDGNEVLLSDVRHMPGLRK 271

Query: 743 NLISLGTLH 769
           +LISLG+LH
Sbjct: 272 SLISLGSLH 280



 Score = 66.6 bits (161), Expect(2) = 6e-39
 Identities = 31/46 (67%), Positives = 40/46 (86%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETL 140
           E SD+ +HV+ FNQ+V DL ++DVKLDDED+A+ILLCSLPP+YE L
Sbjct: 68  EESDLRKHVDIFNQLVVDLRKLDVKLDDEDKAIILLCSLPPSYEHL 113


>emb|CAE04897.3| OSJNBa0042I15.19 [Oryza sativa Japonica Group]
          Length = 478

 Score =  120 bits (302), Expect(2) = 5e-38
 Identities = 67/187 (35%), Positives = 98/187 (52%), Gaps = 3/187 (1%)
 Frame = +2

Query: 218 RQHASSDKSQGDGLYAGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTGHYK 397
           R++   + SQ +GL    +    + K  +K+                  C+ C + GH +
Sbjct: 243 RKNKEGETSQAEGLLVKEDHAGHKVKKNKKKK--------------MVKCFRCDEWGHIR 288

Query: 398 RECTNKKQNGARDSGDSSKSANVVQNEN-SDSGDSDMLSVTSRNMSDS--WILDTGYSFH 568
           REC   K             ANV  + N SDS   D+L+++S    D+  WILD+  SFH
Sbjct: 289 RECPTLK---------GKAKANVATSSNDSDSDGCDLLTMSSAQSKDAEAWILDSASSFH 339

Query: 569 MTPNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRKNL 748
           +TP KEWF SYK+G    V LGD+ +   VG+G++K+++ D     L  VRH+P L++NL
Sbjct: 340 VTPRKEWFSSYKSGEFGFVYLGDDTSYPAVGVGEVKIKLEDGGEHVLQGVRHVPGLKRNL 399

Query: 749 ISLGTLH 769
           ISLGTLH
Sbjct: 400 ISLGTLH 406



 Score = 64.3 bits (155), Expect(2) = 5e-38
 Identities = 27/44 (61%), Positives = 38/44 (86%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYE 134
           EG+D+  HVN FNQ+V DL ++DV++DDED+A++LLCSLP +YE
Sbjct: 196 EGADLTAHVNVFNQLVTDLVKMDVEVDDEDKAIVLLCSLPESYE 239


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1175

 Score =  119 bits (297), Expect(2) = 1e-34
 Identities = 70/180 (38%), Positives = 97/180 (53%), Gaps = 1/180 (0%)
 Frame = +2

Query: 230 SSDKSQGDGLYAGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTGHYKRECT 409
           S  ++  D      NQ RGR K + K+                  C  C K  H+  EC 
Sbjct: 103 SEQRTYNDSNDRDKNQSRGRSKSRGKK-----------------FCKYCKKKNHFIEECW 145

Query: 410 NKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYSFHMTPNKEW 589
            K QN  +   D  K++ V   +NSDSGD  ++ V   +  D WILDT  SFH+  N++W
Sbjct: 146 -KLQNKEKRKSDG-KASVVTSADNSDSGDCLVVFVVCVSSHDEWILDTTCSFHICINRDW 203

Query: 590 FESYKA-GNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRKNLISLGTL 766
           F SYK+  N   V++GD+N   +VGIG ++++ HD + RTL DVRHIP + +NLISL TL
Sbjct: 204 FSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPRMARNLISLSTL 263



 Score = 55.1 bits (131), Expect(2) = 1e-34
 Identities = 24/66 (36%), Positives = 39/66 (59%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           E   ++ H++ F +IV DL  ++V+ DDED  ++LLCSLP +Y      +   + E++L 
Sbjct: 10  ESGSILNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRDTILLSRSELTLA 69

Query: 183 TVTTAL 200
            V  AL
Sbjct: 70  EVYEAL 75


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  126 bits (316), Expect(2) = 2e-34
 Identities = 71/184 (38%), Positives = 99/184 (53%), Gaps = 1/184 (0%)
 Frame = +2

Query: 218 RQHASSDKSQGDGLYA-GNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTGHY 394
           R     D SQ  GLY  G  + R R +    Q  G               C+  G   H+
Sbjct: 157 RLEREEDSSQARGLYVRGKERGRSRNRGGGFQGRGMSKSKGKGKGKKDG-CFIYGSPDHW 215

Query: 395 KRECTNKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYSFHMT 574
           KR C   K+  A+ SG+SS+ ANVV   N + G+   +S TS      W LDT  +FH  
Sbjct: 216 KRNCKQWKEKKAQMSGESSQLANVVIGYNDEDGELLAIS-TSSGAPRHWTLDTACTFHTC 274

Query: 575 PNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRKNLIS 754
            +++WF++YK GN  SV +G+++   ++GIG +K+RMHD IVR L +VRH P L +NLIS
Sbjct: 275 AHRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNVRHTPGLNRNLIS 334

Query: 755 LGTL 766
           L T+
Sbjct: 335 LSTM 338



 Score = 47.0 bits (110), Expect(2) = 2e-34
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           EG D+  H+  F   + +L +V  K+DDED A++LL SLPP ++   T +   KE I+L 
Sbjct: 88  EGDDLNDHICKFQNCIANLEKVGAKMDDEDTAVMLLHSLPPLFKHFKTTMIF-KELITLS 146

Query: 183 TV 188
            V
Sbjct: 147 KV 148


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
           gi|108708632|gb|ABF96427.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1326

 Score =  117 bits (292), Expect(2) = 2e-34
 Identities = 72/186 (38%), Positives = 97/186 (52%), Gaps = 1/186 (0%)
 Frame = +2

Query: 212 RERQHASSDKSQGDGLYAGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTGH 391
           R  Q   +D S  D      +Q RGR K + K+                  C  C K  H
Sbjct: 207 RSEQRTYNDSSDRD-----KSQSRGRSKSRGKK-----------------FCKYCKKKNH 244

Query: 392 YKRECTNKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYSFHM 571
           +  EC  K QN  +   D  K++ V   ENSDSGD  ++        D WILDT  SFH+
Sbjct: 245 FIEECW-KLQNKEKRKSDG-KASVVTSAENSDSGDCLVVFAGCVASHDEWILDTACSFHI 302

Query: 572 TPNKEWFESYKA-GNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRKNL 748
             N++WF SYK+  N   V++GD+N   +VGIG ++++ HD + RTL DVRHIP + +NL
Sbjct: 303 CINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNL 362

Query: 749 ISLGTL 766
           ISL TL
Sbjct: 363 ISLSTL 368



 Score = 55.8 bits (133), Expect(2) = 2e-34
 Identities = 25/66 (37%), Positives = 40/66 (60%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           E   V+ H++ F +IV DL  ++V+ DDED  ++LLCSLP +Y      +   ++E++L 
Sbjct: 115 ESGSVLNHISVFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRDTILLSRDELTLA 174

Query: 183 TVTTAL 200
            V  AL
Sbjct: 175 EVYEAL 180


>gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 415

 Score = 91.7 bits (226), Expect(2) = 2e-34
 Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 2/189 (1%)
 Frame = +2

Query: 209 QRERQHASSDKSQGDGLYAGNNQDR--GRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGK 382
           +R +++ ++  SQG  L   +  D   G  K KEK                 A CY C +
Sbjct: 186 RRSKKNEATKASQGKSLLVKDKHDHEAGVSKSKEK----------------GARCYKCHE 229

Query: 383 TGHYKRECTNKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYS 562
            GH +R C   K+   R  G +S +A   + ++SDSG  ++L+V+     ++W+LD+  S
Sbjct: 230 FGHIRRNCPLLKK---RKGGIASLAA---RGDDSDSGSHEILTVSDEMSGEAWMLDSASS 283

Query: 563 FHMTPNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRK 742
           +H+T  +EWF SYK+G+   V LGD  +  VVG+G +  +        + + R    +++
Sbjct: 284 YHVTSKREWFSSYKSGDFGVVYLGDGTSYRVVGVGDVNFK--------ICETR--AGIKE 333

Query: 743 NLISLGTLH 769
             +SLG+LH
Sbjct: 334 EFVSLGSLH 342



 Score = 81.3 bits (199), Expect(2) = 2e-34
 Identities = 38/70 (54%), Positives = 55/70 (78%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           E SD+ +HV+ FNQ+V DL ++DVKLDDED+A+ILLCSLP +YE +VT LT GK+ +  E
Sbjct: 115 EESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKDTVKTE 174

Query: 183 TVTTALVAHN 212
            + ++L+A +
Sbjct: 175 EIISSLLARD 184


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|53370655|gb|AAU89150.1| integrase core domain
           containing protein [Oryza sativa Japonica Group]
           gi|108710286|gb|ABF98081.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1322

 Score =  115 bits (289), Expect(2) = 5e-34
 Identities = 71/186 (38%), Positives = 97/186 (52%), Gaps = 1/186 (0%)
 Frame = +2

Query: 212 RERQHASSDKSQGDGLYAGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTGH 391
           R  Q   +D +  D      +Q RGR K + K+                  C  C K  H
Sbjct: 207 RSEQRTYNDSNDHD-----KSQSRGRSKSRGKK-----------------FCKYCKKKNH 244

Query: 392 YKRECTNKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYSFHM 571
           +  EC  K QN  +   D  K++ V   ENSDSGD  ++        D WILDT  SFH+
Sbjct: 245 FIEECW-KLQNKEKRKSDG-KASVVTSAENSDSGDCLVVFAGYVASHDEWILDTACSFHI 302

Query: 572 TPNKEWFESYKA-GNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRKNL 748
             N++WF SYK+  N   V++GD+N   +VGIG ++++ HD + RTL DVRHIP + +NL
Sbjct: 303 CINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNL 362

Query: 749 ISLGTL 766
           ISL TL
Sbjct: 363 ISLSTL 368



 Score = 55.8 bits (133), Expect(2) = 5e-34
 Identities = 25/66 (37%), Positives = 40/66 (60%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           E   V+ H++ F +IV DL  ++V+ DDED  ++LLCSLP +Y      +   ++E++L 
Sbjct: 115 ESGSVLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSRDELTLA 174

Query: 183 TVTTAL 200
            V  AL
Sbjct: 175 EVYEAL 180


>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
          Length = 344

 Score =  114 bits (286), Expect(2) = 6e-34
 Identities = 65/179 (36%), Positives = 97/179 (54%), Gaps = 6/179 (3%)
 Frame = +2

Query: 248 GDGLYAG------NNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTGHYKRECT 409
           G+GL A       NN  RGR + K + ++                C+ C K GHY +   
Sbjct: 151 GEGLVARGRTRKKNNGRRGRSRSKSRGNNK---------------CFKCKKEGHYVKNXP 195

Query: 410 NKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYSFHMTPNKEW 589
           ++K    + + +S  +    +N N+    +D+L V   N  D WILD+G S+HM+PN +W
Sbjct: 196 DRKGKENKRNYNSGDATFAKENSNT----TDVLLVXVTNSDDEWILDSGCSYHMSPNGDW 251

Query: 590 FESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRKNLISLGTL 766
           F +Y+  +   V +G+   C VVGI  I+++MH  I+RTLT+VRH+P L KNLI L TL
Sbjct: 252 FSTYQPIDGGKVLMGNKVACKVVGIHXIQIKMHGGIIRTLTNVRHVPKLNKNLIFLRTL 310



 Score = 56.6 bits (135), Expect(2) = 6e-34
 Identities = 26/66 (39%), Positives = 40/66 (60%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           E   +  H N FN+ + DL  +DVK++ EDQA+ L+CSLP +YE  V  +  G+  + ++
Sbjct: 68  ESMSIKDHFNEFNKTIXDLRNIDVKVNYEDQAIFLMCSLPNSYEHFVDIMMYGRGTLFIK 127

Query: 183 TVTTAL 200
            V  AL
Sbjct: 128 DVRVAL 133


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  109 bits (273), Expect(2) = 8e-34
 Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 1/186 (0%)
 Frame = +2

Query: 212 RERQHASSDKSQGDGLYAGNNQDRGRQKDKEK-QSDGXXXXXXXXXXXXXAVCYGCGKTG 388
           R + + +S   Q  GL+  + + R     K K  S G              VC  C + G
Sbjct: 182 RHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDD---------VCNYCKEKG 232

Query: 389 HYKRECTNKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYSFH 568
           H+K +C  KK    + S   S SA V + + +   D  +++    + SD W+LD+G S+H
Sbjct: 233 HWKFDCPKKK----KQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSGASYH 288

Query: 569 MTPNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRKNL 748
           + P +EWF +Y+  +  S+ + +++ C VVG G IK+R HD    TL +VRH+P + KNL
Sbjct: 289 ICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNL 348

Query: 749 ISLGTL 766
           ISL  L
Sbjct: 349 ISLSLL 354



 Score = 61.2 bits (147), Expect(2) = 8e-34
 Identities = 28/66 (42%), Positives = 45/66 (68%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           EG+ + +H+   N ++ +L  +DVK++DED A+ILL SLP ++E  V +   GK+ +SLE
Sbjct: 111 EGTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLE 170

Query: 183 TVTTAL 200
            V +AL
Sbjct: 171 EVRSAL 176


>ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group]
           gi|255676990|dbj|BAH93480.1| Os06g0316600 [Oryza sativa
           Japonica Group]
          Length = 759

 Score =  113 bits (283), Expect(2) = 1e-33
 Identities = 67/180 (37%), Positives = 95/180 (52%), Gaps = 1/180 (0%)
 Frame = +2

Query: 230 SSDKSQGDGLYAGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTGHYKRECT 409
           S  ++  D      +Q RGR K + K+                  C  C K  H+  EC 
Sbjct: 137 SEQRTYNDSNDRDKSQSRGRSKPRGKK-----------------FCKYCKKKNHFIEECW 179

Query: 410 NKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYSFHMTPNKEW 589
            K QN  +   D  K++ V   +NSDSGD  ++        D WILDT  SFH+  N++W
Sbjct: 180 -KLQNKEKRKYDG-KASVVTSADNSDSGDCLVVFAGCVASHDEWILDTACSFHICINRDW 237

Query: 590 FESYKA-GNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRKNLISLGTL 766
           F SYK+  N   V++GD+N  G++GIG ++++ HD + RTL D RHIP + +NLISL TL
Sbjct: 238 FSSYKSVQNGDVVRMGDDNPRGIMGIGSVQIKTHDGMTRTLKDARHIPGMARNLISLSTL 297



 Score = 57.0 bits (136), Expect(2) = 1e-33
 Identities = 26/66 (39%), Positives = 40/66 (60%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           E   V+ H++ F +IV DL  +DV+ DDED  ++LLCSLP +Y      +   ++E++L 
Sbjct: 58  ESGSVLNHISVFKEIVADLVSMDVQFDDEDLGLLLLCSLPSSYAIFRDTIFLSRDELTLA 117

Query: 183 TVTTAL 200
            V  AL
Sbjct: 118 EVYEAL 123


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  110 bits (276), Expect(2) = 2e-33
 Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 1/180 (0%)
 Frame = +2

Query: 230 SSDKSQGDGLYAGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTGHYKRECT 409
           S  ++  D      ++ RGR K + K+                  C  C K  H+ +EC 
Sbjct: 208 SEQRTYNDSNDRDKSKSRGRSKSRGKK-----------------FCKYCKKKIHFIKECW 250

Query: 410 NKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYSFHMTPNKEW 589
            K QN  +   D  K++ V   +NSDSGD  ++        D WILDT  SFH+  N++W
Sbjct: 251 -KLQNKEKRKSDG-KASVVTSAKNSDSGDCLVVFAGCVASHDEWILDTACSFHIYINRDW 308

Query: 590 FESYKA-GNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRKNLISLGTL 766
           F SYK+  N   V++G++N   +VGIG ++++ HD I RTL DVRHIP + +NLISL TL
Sbjct: 309 FSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTL 368



 Score = 58.5 bits (140), Expect(2) = 2e-33
 Identities = 26/66 (39%), Positives = 41/66 (62%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           E   V+ H++ F +IV DL  ++V+ DDED  ++LLCSLP +YE     +   ++E++L 
Sbjct: 115 ESGSVLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYENFRDTILLSRDELTLA 174

Query: 183 TVTTAL 200
            V  AL
Sbjct: 175 EVYEAL 180


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  108 bits (270), Expect(2) = 3e-31
 Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 7/193 (3%)
 Frame = +2

Query: 209 QRERQHASSDKSQGDGLYAGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTG 388
           Q+E+   +  + +    Y G ++ RGR K                       C  C + G
Sbjct: 148 QQEKNTDNKSRDKSSSGYRGRSKSRGRYKS----------------------CKYCKRGG 185

Query: 389 HYKRECTNKKQNGARDSGD-------SSKSANVVQNENSDSGDSDMLSVTSRNMSDSWIL 547
           H   +C  K QN  +  G+         +    V  +N    +  +        SD W+L
Sbjct: 186 HDISDCW-KLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGCVQTSDEWLL 244

Query: 548 DTGYSFHMTPNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHI 727
           DTG ++HM PN++WF +Y+     +V +GDN  C V G+G I+++M D  +RTL+DVRHI
Sbjct: 245 DTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHI 304

Query: 728 PALRKNLISLGTL 766
           P+L++NLISL TL
Sbjct: 305 PSLKRNLISLSTL 317



 Score = 53.9 bits (128), Expect(2) = 3e-31
 Identities = 25/75 (33%), Positives = 43/75 (57%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           +   V+ H++ F +IV DL  +++K D+ED  +ILLCSLP +Y      +   ++ ++L+
Sbjct: 55  DDESVMDHLSTFKEIVADLESMEIKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLQ 114

Query: 183 TVTTALVAHNESGNM 227
            V  AL A  +   M
Sbjct: 115 EVYDALHAKEKMKKM 129


>emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]
          Length = 777

 Score =  111 bits (278), Expect(2) = 4e-31
 Identities = 61/179 (34%), Positives = 100/179 (55%)
 Frame = +2

Query: 230 SSDKSQGDGLYAGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTGHYKRECT 409
           SSDK+ G     G ++ + + K K+   +                CY C K G  +R C 
Sbjct: 100 SSDKTNG-----GKSRSKSKSKGKKDYRN--------------VKCYHCNKIGQIRRICP 140

Query: 410 NKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYSFHMTPNKEW 589
           +++Q    +   +  SA ++ ++  DS  +++L++      + W+LD+G ++HM P ++W
Sbjct: 141 DRQQE---EKTQAQGSAAII-DDGYDS--TEVLTIRLNPNHEEWVLDSGCTYHMCPRRDW 194

Query: 590 FESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRKNLISLGTL 766
           F SY+  N   + LG+N +C VVGIG + + MHD   RTL +VRH+P L++NLISLGTL
Sbjct: 195 FSSYQEVNGGKLLLGNNMSCNVVGIGTMAINMHDGKTRTLKEVRHVPDLKRNLISLGTL 253



 Score = 50.4 bits (119), Expect(2) = 4e-31
 Identities = 26/68 (38%), Positives = 43/68 (63%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           E   +   ++ FN++V DL  +D+K++DED+A+ILL SLP + +     L  GK++I+ +
Sbjct: 26  ESKPIDDALDEFNKLVLDLESLDIKVEDEDKAIILLNSLPKSLKHFKETLKYGKDDITFD 85

Query: 183 TVTTALVA 206
            V  AL A
Sbjct: 86  DVQNALNA 93


>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
          Length = 947

 Score =  114 bits (284), Expect(2) = 5e-31
 Identities = 62/184 (33%), Positives = 101/184 (54%)
 Frame = +2

Query: 215 ERQHASSDKSQGDGLYAGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTGHY 394
           ++Q  S D+S G+GL      D+  +K K  ++                 C+ C K GH+
Sbjct: 229 QKQEESKDES-GEGLNIRGRYDKREKKCKNLKAKSKSNTKKFK-------CFICHKEGHF 280

Query: 395 KRECTNKKQNGARDSGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWILDTGYSFHMT 574
           K++C++K+QN  + + +   +A ++   +S    + +L+V   +    WILD+G SFHM 
Sbjct: 281 KKDCSDKRQNTIKKTVNEGDAAVILDGYDS----AKVLNVAEMDSGKEWILDSGCSFHMC 336

Query: 575 PNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHIPALRKNLIS 754
           P K WFE +K  N   V LG+N  C ++G   ++++ +D I R L  VR+IP L++NLIS
Sbjct: 337 PIKAWFEDFKEANGGHVLLGNNKHCKILGTSIVRIKHYDGIERVLEVVRYIPELKRNLIS 396

Query: 755 LGTL 766
           LG L
Sbjct: 397 LGML 400



 Score = 47.8 bits (112), Expect(2) = 5e-31
 Identities = 20/65 (30%), Positives = 41/65 (63%)
 Frame = +3

Query: 6   GSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLET 185
           G  + +H + FN+I+ DL  +D+ + +ED+A++LL SL  +Y  +  A+  G++ ++ + 
Sbjct: 159 GMSIEEHFDHFNKIILDLENIDITVSNEDKAILLLTSLDASYTNMKEAIMYGRDSMTFDE 218

Query: 186 VTTAL 200
           V + L
Sbjct: 219 VQSIL 223


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  105 bits (263), Expect(2) = 6e-31
 Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 7/193 (3%)
 Frame = +2

Query: 209 QRERQHASSDKSQGDGLYAGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTG 388
           Q+E+   +  + +   +Y G ++ RGR K                       C  C + G
Sbjct: 115 QQEKNTNNKSRDKSSSIYRGRSKSRGRYKS----------------------CKYCKRDG 152

Query: 389 HYKRECTNKKQNGARD-------SGDSSKSANVVQNENSDSGDSDMLSVTSRNMSDSWIL 547
           H   EC   +    R          +    A VV +E SD+ +  +        SD WIL
Sbjct: 153 HDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDA-ELLVAYAGCAQTSDQWIL 211

Query: 548 DTGYSFHMTPNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIKVRMHDDIVRTLTDVRHI 727
           DT  ++HM PN++WF +Y+A    +V +GD+  C V GIG ++++M D  +RTL DVRHI
Sbjct: 212 DTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHI 271

Query: 728 PALRKNLISLGTL 766
           P L+++LISL TL
Sbjct: 272 PNLKRSLISLCTL 284



 Score = 55.5 bits (132), Expect(2) = 6e-31
 Identities = 27/75 (36%), Positives = 44/75 (58%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVDVKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISLE 182
           +   V+ H++AF +IV DL  ++VK D+ED  +ILLCSLP +Y      +   ++ ++L+
Sbjct: 22  DDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLK 81

Query: 183 TVTTALVAHNESGNM 227
            V  AL A  +   M
Sbjct: 82  EVYDALHAKEKMKKM 96


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  107 bits (268), Expect(2) = 8e-31
 Identities = 65/186 (34%), Positives = 101/186 (54%), Gaps = 2/186 (1%)
 Frame = +2

Query: 215 ERQHASSDKSQGDGLYAGNNQDRGRQKDKEKQSDGXXXXXXXXXXXXXAVCYGCGKTGHY 394
           E++    +K+QG G   G NQ+   +K K+++                  C+ C K GHY
Sbjct: 206 EKKKDQKNKNQGKG--HGKNQETADKKKKKRK------------------CFYCRKEGHY 245

Query: 395 KRECTNKKQNGARDSGDSSKSANVVQNENSDSGDS-DMLSVTSRNMSDSWILDTGYSFHM 571
            R+C  KK+   ++S + S  A V  ++ SD   S D+L  ++ N    W++D+G SFH+
Sbjct: 246 IRDCFEKKK---KESQEKSGDAAVASDDGSDGYQSADLLVASNSNTKGQWVIDSGCSFHL 302

Query: 572 TPNKEWFESYKAGNLSSVQLGDNNTCGVVGIGQIK-VRMHDDIVRTLTDVRHIPALRKNL 748
            P K  F  Y+A +   V +G+NN C +VGI   K  R   +++R+L +VRH P L++NL
Sbjct: 303 CPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLMELLRSLHEVRHAPRLKRNL 362

Query: 749 ISLGTL 766
           ISLG L
Sbjct: 363 ISLGML 368



 Score = 53.1 bits (126), Expect(2) = 8e-31
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
 Frame = +3

Query: 3   EGSDVVQHVNAFNQIVGDLGRVD-VKLDDEDQAMILLCSLPPTYETLVTALTAGKEEISL 179
           EG  +  H++ FN+I+ DL  V+ VK+ DED+A  LL SLP +YE  V  +  G+  ++L
Sbjct: 116 EGVTIQDHIDTFNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTL 175

Query: 180 ETVTTAL 200
           E V  +L
Sbjct: 176 EDVKASL 182